Wall clock time and date at job start Mon Mar 30 2020 02:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38049 * 126.29196 * 2 1 4 4 C 1.47435 * 126.41008 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00181 * 0.21897 * 4 3 2 6 6 N 1.34776 * 119.99721 * 180.21497 * 4 3 2 7 7 C 1.47068 * 136.05365 * 0.02562 * 6 4 3 8 8 C 1.53504 * 87.98322 * 207.08294 * 7 6 4 9 9 H 1.08995 * 114.20708 * 220.15118 * 8 7 6 10 10 C 1.52994 * 114.20823 * 87.51846 * 8 7 6 11 11 C 1.47063 * 136.05865 * 179.62861 * 6 4 3 12 12 H 1.08998 * 113.46451 * 38.13784 * 11 6 4 13 13 C 1.53001 * 113.46901 * 267.69796 * 11 6 4 14 14 C 1.41282 * 107.17290 * 180.17529 * 3 2 1 15 15 N 1.30449 * 108.02396 * 359.57349 * 14 3 2 16 16 N 1.34254 * 126.29580 * 179.70833 * 2 1 3 17 17 C 1.46508 * 125.75138 * 359.97438 * 16 2 1 18 18 C 1.50700 * 109.46824 * 270.02046 * 17 16 2 19 19 H 1.08000 * 120.00120 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99767 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00108 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99772 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47150 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47173 * 120.00448 * 22 20 18 25 25 H 1.48497 * 109.47508 * 240.00476 * 22 20 18 26 26 H 1.09002 * 109.47104 * 270.31460 * 1 2 3 27 27 H 1.08999 * 109.47228 * 30.32185 * 1 2 3 28 28 H 1.09010 * 109.46969 * 150.31937 * 1 2 3 29 29 H 1.08996 * 113.46914 * 321.85473 * 7 6 4 30 30 H 1.08995 * 113.46902 * 92.30873 * 7 6 4 31 31 H 1.08999 * 109.47389 * 79.50766 * 10 8 7 32 32 H 1.09001 * 109.47524 * 199.50675 * 10 8 7 33 33 H 1.09001 * 109.47436 * 319.50958 * 10 8 7 34 34 H 1.08998 * 109.46814 * 79.50833 * 13 11 6 35 35 H 1.08993 * 109.47156 * 199.50290 * 13 11 6 36 36 H 1.08992 * 109.46929 * 319.50319 * 13 11 6 37 37 H 1.08002 * 125.99189 * 179.84240 * 14 3 2 38 38 H 1.08996 * 109.47248 * 30.02525 * 17 16 2 39 39 H 1.09000 * 109.47111 * 150.02713 * 17 16 2 40 40 H 0.97004 * 119.99448 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5204 0.0005 5 8 0.6995 2.7878 0.0051 6 7 2.7998 3.5108 -0.0039 7 6 4.2679 3.5967 -0.0102 8 6 4.1372 4.9574 0.6880 9 1 4.8364 5.7128 0.3294 10 6 4.0660 4.8752 2.2141 11 6 2.7680 4.9810 -0.0117 12 1 1.9719 5.4012 0.6030 13 6 2.8124 5.5841 -1.4171 14 6 3.6590 0.6500 -0.0041 15 7 3.6341 -0.6543 0.0028 16 7 2.3017 -1.0820 0.0055 17 6 1.8501 -2.4758 0.0131 18 6 1.6953 -2.9458 1.4366 19 1 1.9113 -2.2735 2.2538 20 6 1.2770 -4.2338 1.6956 21 7 1.0136 -5.0523 0.7005 22 14 1.0845 -4.8162 3.4600 23 1 1.4400 -3.7121 4.3873 24 1 -0.3235 -5.2256 3.6953 25 1 1.9832 -5.9736 3.7002 26 1 -0.3633 0.0056 1.0277 27 1 -0.3633 0.8871 -0.5188 28 1 -0.3633 -0.8929 -0.5089 29 1 4.7499 2.8374 0.6057 30 1 4.6947 3.6617 -1.0111 31 1 5.0693 4.7399 2.6179 32 1 3.6370 5.7966 2.6080 33 1 3.4409 4.0305 2.5037 34 1 1.8203 5.5333 -1.8657 35 1 3.1306 6.6247 -1.3561 36 1 3.5178 5.0238 -2.0307 37 1 4.5449 1.2677 -0.0076 38 1 0.8916 -2.5499 -0.5003 39 1 2.5848 -3.0985 -0.4972 40 1 0.7189 -5.9583 0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897852193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:25 Heat of formation + Delta-G solvation = 44.213603 kcal Electronic energy + Delta-G solvation = -21616.799560 eV Core-core repulsion = 18433.391215 eV Total energy + Delta-G solvation = -3183.408345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.42346 -41.35268 -38.80555 -35.84199 -33.97482 -32.85982 -32.13394 -31.13917 -29.14745 -28.38481 -27.41393 -25.59800 -24.44247 -23.28326 -21.51819 -20.55327 -19.23820 -18.87797 -18.08551 -17.11177 -16.90828 -16.71334 -16.32649 -16.07761 -15.22095 -14.95730 -14.71408 -14.45681 -14.28633 -14.06483 -13.94552 -13.76223 -13.63753 -13.17255 -13.11848 -13.00385 -12.98386 -12.72563 -12.57248 -12.36571 -12.30244 -12.02217 -11.85752 -11.68520 -11.07516 -10.78159 -10.71454 -10.30440 -9.80002 -9.36593 -8.39980 -6.56492 0.63447 1.28244 1.35065 1.36863 1.47776 1.59577 2.02158 2.31057 2.50429 2.92108 3.30318 3.55417 3.69629 3.87410 4.03797 4.15731 4.19497 4.28028 4.35262 4.44502 4.56480 4.58782 4.63451 4.73134 4.82942 4.87269 4.94196 4.99318 5.01268 5.05239 5.10112 5.19430 5.26787 5.35137 5.47095 5.52380 5.64864 5.72300 6.00804 6.52313 6.76876 6.82154 7.14702 7.29739 8.68284 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028480 B = 0.004086 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.895100 B = 6851.533846 C = 7050.273845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.143 3.857 3 C -0.327 4.327 4 C 0.625 3.375 5 O -0.592 6.592 6 N -0.645 5.645 7 C 0.089 3.911 8 C -0.102 4.102 9 H 0.136 0.864 10 C -0.134 4.134 11 C 0.123 3.877 12 H 0.069 0.931 13 C -0.148 4.148 14 C 0.075 3.925 15 N -0.334 5.334 16 N -0.336 5.336 17 C 0.267 3.733 18 C -0.556 4.556 19 H 0.050 0.950 20 C 0.025 3.975 21 N -0.916 5.916 22 Si 0.973 3.027 23 H -0.274 1.274 24 H -0.268 1.268 25 H -0.271 1.271 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.221 0.779 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 20.955 -1.475 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.007 3.993 3 C -0.342 4.342 4 C 0.418 3.582 5 O -0.475 6.475 6 N -0.379 5.379 7 C -0.033 4.033 8 C -0.121 4.121 9 H 0.154 0.846 10 C -0.192 4.192 11 C 0.020 3.980 12 H 0.087 0.913 13 C -0.206 4.206 14 C -0.111 4.111 15 N -0.154 5.154 16 N -0.113 5.113 17 C 0.148 3.852 18 C -0.594 4.594 19 H 0.068 0.932 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.797 3.203 23 H -0.198 1.198 24 H -0.193 1.193 25 H -0.197 1.197 26 H 0.100 0.900 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.252 19.473 -1.525 20.835 hybrid contribution -0.873 -0.344 0.641 1.137 sum 6.378 19.129 -0.884 20.184 Atomic orbital electron populations 1.20525 0.85851 1.03939 1.03885 1.21946 0.95944 0.86720 0.94712 1.19925 0.93397 0.92813 1.28057 1.16708 0.83897 0.83059 0.74552 1.90656 1.17707 1.84502 1.54591 1.49538 1.08639 1.06911 1.72793 1.23560 0.79622 0.97890 1.02230 1.22886 0.96022 0.97603 0.95566 0.84634 1.21543 1.02615 1.01573 0.93429 1.22862 0.98493 0.78765 0.97853 0.91273 1.21947 1.02085 1.02534 0.94050 1.24645 0.97658 0.91520 0.97298 1.77085 0.98349 1.14241 1.25713 1.49119 1.03325 1.07757 1.51131 1.19399 0.95331 0.72194 0.98252 1.21406 1.48036 0.98541 0.91444 0.93160 1.25730 0.93734 0.95817 1.02404 1.70002 1.44769 1.07488 1.33138 0.85283 0.78518 0.78183 0.78356 1.19841 1.19283 1.19653 0.89957 0.88337 0.90791 0.89905 0.87162 0.90225 0.91154 0.95300 0.93879 0.88015 0.91221 0.76317 0.93140 0.94898 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.29 9.56 71.24 0.68 -2.61 16 2 C 0.14 6.24 7.01 42.14 0.30 6.54 16 3 C -0.33 -12.76 6.13 -20.15 -0.12 -12.88 16 4 C 0.62 22.60 8.07 86.67 0.70 23.30 16 5 O -0.59 -24.89 15.62 -4.02 -0.06 -24.95 16 6 N -0.64 -16.63 3.26 -836.87 -2.73 -19.36 16 7 C 0.09 1.42 6.31 83.18 0.52 1.95 16 8 C -0.10 -1.24 4.37 -10.36 -0.05 -1.29 16 9 H 0.14 0.71 8.11 -2.39 -0.02 0.69 16 10 C -0.13 -1.91 9.71 71.98 0.70 -1.21 16 11 C 0.12 2.29 4.55 41.89 0.19 2.48 16 12 H 0.07 1.49 8.13 -2.39 -0.02 1.48 16 13 C -0.15 -2.11 9.79 71.98 0.70 -1.40 16 14 C 0.08 2.70 11.14 85.65 0.95 3.66 16 15 N -0.33 -14.99 12.50 -56.28 -0.70 -15.69 16 16 N -0.34 -16.17 3.56 -336.69 -1.20 -17.37 16 17 C 0.27 14.12 5.97 85.63 0.51 14.63 16 18 C -0.56 -31.27 9.39 25.60 0.24 -31.03 16 19 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 20 C 0.02 1.35 5.46 84.66 0.46 1.81 16 21 N -0.92 -51.70 13.29 21.45 0.28 -51.41 16 22 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.10 3.71 6.52 -2.39 -0.02 3.69 16 28 H 0.07 2.82 7.05 -2.38 -0.02 2.81 16 29 H 0.08 1.32 6.11 -2.39 -0.01 1.31 16 30 H 0.11 1.26 7.28 -2.39 -0.02 1.25 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.03 0.60 7.94 -2.39 -0.02 0.58 16 34 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.91 7.01 -2.39 -0.02 0.89 16 37 H 0.22 5.58 5.21 -2.91 -0.02 5.57 16 38 H 0.05 2.67 7.02 -2.39 -0.02 2.66 16 39 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -71.36 331.89 4.45 -66.91 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 1.04 Total: 12.74 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.79 Total: 3.93 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.35 Total: -103.84 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.95 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -71.36 4.45 -66.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.129 kcal (2) G-P(sol) polarization free energy of solvation -71.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds