Wall clock time and date at job start Mon Mar 30 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 126.28872 * 2 1 4 4 C 1.47438 * 126.41167 * 359.96140 * 3 2 1 5 5 O 1.21603 * 120.00200 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99783 * 179.72893 * 4 3 2 7 7 C 1.47070 * 136.05851 * 0.27142 * 6 4 3 8 8 C 1.53494 * 87.98508 * 207.09065 * 7 6 4 9 9 H 1.08994 * 114.20887 * 87.72261 * 8 7 6 10 10 C 1.53004 * 114.20130 * 220.34506 * 8 7 6 11 11 C 1.47067 * 136.05761 * 179.90809 * 6 4 3 12 12 H 1.08995 * 113.46483 * 267.69097 * 11 6 4 13 13 C 1.53004 * 113.46796 * 38.13214 * 11 6 4 14 14 C 1.41288 * 107.17376 * 180.22421 * 3 2 1 15 15 N 1.30453 * 108.01781 * 359.55848 * 14 3 2 16 16 N 1.34254 * 126.29448 * 179.97438 * 2 1 3 17 17 C 1.46501 * 125.75570 * 0.02562 * 16 2 1 18 18 C 1.50699 * 109.46970 * 90.00214 * 17 16 2 19 19 H 1.08003 * 120.00143 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00311 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47050 * 59.99345 * 22 20 18 24 24 H 1.48492 * 109.47105 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46808 * 299.99662 * 22 20 18 26 26 H 1.09001 * 109.46841 * 90.00584 * 1 2 3 27 27 H 1.09005 * 109.46412 * 209.99769 * 1 2 3 28 28 H 1.08991 * 109.47579 * 330.00024 * 1 2 3 29 29 H 1.09004 * 113.46859 * 321.86839 * 7 6 4 30 30 H 1.08993 * 113.46604 * 92.24867 * 7 6 4 31 31 H 1.08997 * 109.47263 * 40.49729 * 10 8 7 32 32 H 1.09008 * 109.46766 * 160.49439 * 10 8 7 33 33 H 1.08997 * 109.47316 * 280.48870 * 10 8 7 34 34 H 1.08995 * 109.46984 * 40.49281 * 13 11 6 35 35 H 1.08994 * 109.47036 * 160.49518 * 13 11 6 36 36 H 1.09006 * 109.46601 * 280.49575 * 13 11 6 37 37 H 1.07996 * 125.99246 * 179.73419 * 14 3 2 38 38 H 1.08998 * 109.47079 * 210.00340 * 17 16 2 39 39 H 1.09004 * 109.47094 * 330.00137 * 17 16 2 40 40 H 0.96993 * 119.99510 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8856 2.5204 -0.0008 5 8 0.6994 2.7878 -0.0011 6 7 2.7997 3.5108 0.0048 7 6 4.2678 3.5969 0.0075 8 6 4.1329 4.9542 0.7116 9 1 4.0794 4.8905 1.7984 10 6 5.1141 6.0183 0.2158 11 6 2.7678 4.9812 0.0045 12 1 2.8050 5.4159 -0.9943 13 6 1.6456 5.5665 0.8641 14 6 3.6590 0.6500 -0.0053 15 7 3.6341 -0.6542 0.0013 16 7 2.3017 -1.0821 0.0005 17 6 1.8502 -2.4758 0.0006 18 6 1.6960 -2.9539 -1.4202 19 1 1.9122 -2.2862 -2.2412 20 6 1.2779 -4.2433 -1.6721 21 7 1.0141 -5.0562 -0.6724 22 14 1.0873 -4.8362 -3.4333 23 1 2.3941 -4.7398 -4.1321 24 1 0.6296 -6.2488 -3.4332 25 1 0.0874 -3.9914 -4.1345 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 4.7463 2.8346 0.6224 30 1 4.7004 3.6657 -0.9906 31 1 5.2046 5.9521 -0.8684 32 1 4.7466 7.0073 0.4900 33 1 6.0900 5.8538 0.6726 34 1 1.5573 4.9925 1.7864 35 1 1.8748 6.6050 1.1029 36 1 0.7050 5.5190 0.3151 37 1 4.5448 1.2678 -0.0107 38 1 2.5847 -3.0956 0.5148 39 1 0.8914 -2.5470 0.5141 40 1 0.7195 -5.9632 -0.8497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897852195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:28 Heat of formation + Delta-G solvation = 63.045220 kcal Electronic energy + Delta-G solvation = -21493.194734 eV Core-core repulsion = 18310.602989 eV Total energy + Delta-G solvation = -3182.591745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.93270 -40.11825 -37.41001 -33.89515 -32.25906 -31.62541 -31.06484 -30.31875 -27.69435 -26.85959 -26.01463 -23.81179 -22.90980 -21.83360 -20.42869 -19.28202 -18.39575 -16.86264 -16.59063 -15.81089 -15.47926 -15.17340 -14.71124 -14.32428 -14.14599 -14.01167 -13.45358 -13.22601 -13.00411 -12.69610 -12.57593 -12.40824 -12.08940 -11.89517 -11.78117 -11.74756 -11.52560 -11.48497 -11.44732 -11.11928 -10.86230 -10.35597 -10.25756 -10.12146 -9.94144 -9.28004 -8.69865 -8.62194 -8.53180 -7.86676 -6.32659 -4.40553 2.22060 2.81332 2.95305 3.20646 3.24467 3.27598 3.44624 3.92577 4.07727 4.25023 4.65249 4.77096 4.98093 5.03176 5.07275 5.14315 5.20732 5.26381 5.38343 5.41862 5.49382 5.59094 5.64493 5.73890 5.77900 5.84729 5.89350 6.10500 6.12398 6.17442 6.31033 6.48694 6.62077 6.82962 6.92187 7.19463 7.57162 7.78336 7.80819 7.98218 8.39653 8.63121 8.66587 9.26223 10.75547 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031882 B = 0.003884 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.014437 B = 7206.751987 C = 7486.959019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.164 3.836 3 C -0.327 4.327 4 C 0.632 3.368 5 O -0.552 6.552 6 N -0.645 5.645 7 C 0.098 3.902 8 C -0.127 4.127 9 H 0.104 0.896 10 C -0.140 4.140 11 C 0.136 3.864 12 H 0.087 0.913 13 C -0.151 4.151 14 C 0.054 3.946 15 N -0.297 5.297 16 N -0.314 5.314 17 C 0.252 3.748 18 C -0.540 4.540 19 H 0.064 0.936 20 C 0.068 3.932 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.273 1.273 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.177 0.823 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.555 19.181 2.917 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.027 3.973 3 C -0.342 4.342 4 C 0.426 3.574 5 O -0.432 6.432 6 N -0.381 5.381 7 C -0.025 4.025 8 C -0.146 4.146 9 H 0.122 0.878 10 C -0.198 4.198 11 C 0.033 3.967 12 H 0.105 0.895 13 C -0.209 4.209 14 C -0.133 4.133 15 N -0.117 5.117 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.579 4.579 19 H 0.083 0.917 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.735 3.265 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.194 0.806 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.363 17.647 2.977 18.683 hybrid contribution -0.384 0.147 -1.063 1.139 sum 4.980 17.794 1.914 18.577 Atomic orbital electron populations 1.20563 0.86803 1.03745 1.03898 1.21456 0.94935 0.86508 0.94450 1.19606 0.93170 0.92146 1.29299 1.16830 0.83686 0.82728 0.74118 1.90687 1.16013 1.83982 1.52480 1.49416 1.07153 1.06108 1.75444 1.23136 0.82179 0.96699 1.00489 1.23155 0.95350 0.95385 1.00748 0.87813 1.21649 0.98704 0.98129 1.01306 1.22689 0.94512 0.80740 0.98763 0.89483 1.21883 0.98623 1.00128 1.00269 1.23986 0.96631 0.92507 1.00181 1.77140 0.98616 1.12305 1.23681 1.49361 1.02506 1.08262 1.48954 1.19842 0.96391 0.70913 0.99406 1.21213 1.47514 0.98148 0.91007 0.91737 1.24921 0.94430 0.95969 0.98308 1.69904 1.44434 1.07226 1.31182 0.86377 0.78881 0.77744 0.83497 1.19899 1.20851 1.19844 0.89876 0.90860 0.88867 0.90082 0.89856 0.92223 0.92068 0.91958 0.92088 0.91832 0.91706 0.80598 0.92524 0.92580 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.73 9.57 36.01 0.34 -1.39 16 2 C 0.16 3.48 7.01 -81.60 -0.57 2.91 16 3 C -0.33 -6.38 6.13 -105.06 -0.64 -7.02 16 4 C 0.63 11.44 7.97 -12.51 -0.10 11.34 16 5 O -0.55 -11.19 15.04 5.27 0.08 -11.11 16 6 N -0.65 -8.91 3.56 -178.51 -0.64 -9.55 16 7 C 0.10 0.97 6.68 -8.51 -0.06 0.91 16 8 C -0.13 -1.01 4.26 -89.97 -0.38 -1.40 16 9 H 0.10 0.83 8.13 -51.93 -0.42 0.41 16 10 C -0.14 -0.79 9.73 37.16 0.36 -0.43 16 11 C 0.14 1.43 4.26 -72.26 -0.31 1.12 16 12 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 13 C -0.15 -1.61 9.26 37.16 0.34 -1.26 16 14 C 0.05 0.99 11.13 -16.98 -0.19 0.80 16 15 N -0.30 -6.62 12.50 30.86 0.39 -6.24 16 16 N -0.31 -7.32 3.56 -57.77 -0.21 -7.52 16 17 C 0.25 6.39 5.97 -5.19 -0.03 6.35 16 18 C -0.54 -14.79 9.39 -34.44 -0.32 -15.11 16 19 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 20 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 21 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 22 Si 0.91 21.02 29.54 -169.99 -5.02 15.99 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.07 1.33 7.05 -51.93 -0.37 0.97 16 28 H 0.09 1.69 6.50 -51.93 -0.34 1.35 16 29 H 0.08 0.77 6.15 -51.93 -0.32 0.45 16 30 H 0.08 0.71 8.03 -51.93 -0.42 0.30 16 31 H 0.06 0.32 8.04 -51.93 -0.42 -0.09 16 32 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.18 2.49 5.22 -52.49 -0.27 2.22 16 38 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.06 1.41 7.02 -51.93 -0.36 1.05 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -31.59 332.98 -7.14 -38.74 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.84 Total: 0.21 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.65 Total: -1.44 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.28 Total: -47.41 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.59 -7.14 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.780 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds