Wall clock time and date at job start Mon Mar 30 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38045 * 126.28872 * 2 1 4 4 C 1.47438 * 126.41167 * 359.96140 * 3 2 1 5 5 O 1.21603 * 120.00200 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99783 * 179.72893 * 4 3 2 7 7 C 1.47070 * 136.05851 * 0.27142 * 6 4 3 8 8 C 1.53494 * 87.98508 * 207.09065 * 7 6 4 9 9 H 1.08994 * 114.20887 * 87.72261 * 8 7 6 10 10 C 1.53004 * 114.20130 * 220.34506 * 8 7 6 11 11 C 1.47067 * 136.05761 * 179.90809 * 6 4 3 12 12 H 1.08995 * 113.46483 * 267.69097 * 11 6 4 13 13 C 1.53004 * 113.46796 * 38.13214 * 11 6 4 14 14 C 1.41288 * 107.17376 * 180.22421 * 3 2 1 15 15 N 1.30453 * 108.01781 * 359.55848 * 14 3 2 16 16 N 1.34254 * 126.29448 * 179.97438 * 2 1 3 17 17 C 1.46501 * 125.75570 * 0.02562 * 16 2 1 18 18 C 1.50699 * 109.46970 * 90.00214 * 17 16 2 19 19 H 1.08003 * 120.00143 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99803 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00311 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99846 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47050 * 59.99345 * 22 20 18 24 24 H 1.48492 * 109.47105 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46808 * 299.99662 * 22 20 18 26 26 H 1.09001 * 109.46841 * 90.00584 * 1 2 3 27 27 H 1.09005 * 109.46412 * 209.99769 * 1 2 3 28 28 H 1.08991 * 109.47579 * 330.00024 * 1 2 3 29 29 H 1.09004 * 113.46859 * 321.86839 * 7 6 4 30 30 H 1.08993 * 113.46604 * 92.24867 * 7 6 4 31 31 H 1.08997 * 109.47263 * 40.49729 * 10 8 7 32 32 H 1.09008 * 109.46766 * 160.49439 * 10 8 7 33 33 H 1.08997 * 109.47316 * 280.48870 * 10 8 7 34 34 H 1.08995 * 109.46984 * 40.49281 * 13 11 6 35 35 H 1.08994 * 109.47036 * 160.49518 * 13 11 6 36 36 H 1.09006 * 109.46601 * 280.49575 * 13 11 6 37 37 H 1.07996 * 125.99246 * 179.73419 * 14 3 2 38 38 H 1.08998 * 109.47079 * 210.00340 * 17 16 2 39 39 H 1.09004 * 109.47094 * 330.00137 * 17 16 2 40 40 H 0.96993 * 119.99510 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8856 2.5204 -0.0008 5 8 0.6994 2.7878 -0.0011 6 7 2.7997 3.5108 0.0048 7 6 4.2678 3.5969 0.0075 8 6 4.1329 4.9542 0.7116 9 1 4.0794 4.8905 1.7984 10 6 5.1141 6.0183 0.2158 11 6 2.7678 4.9812 0.0045 12 1 2.8050 5.4159 -0.9943 13 6 1.6456 5.5665 0.8641 14 6 3.6590 0.6500 -0.0053 15 7 3.6341 -0.6542 0.0013 16 7 2.3017 -1.0821 0.0005 17 6 1.8502 -2.4758 0.0006 18 6 1.6960 -2.9539 -1.4202 19 1 1.9122 -2.2862 -2.2412 20 6 1.2779 -4.2433 -1.6721 21 7 1.0141 -5.0562 -0.6724 22 14 1.0873 -4.8362 -3.4333 23 1 2.3941 -4.7398 -4.1321 24 1 0.6296 -6.2488 -3.4332 25 1 0.0874 -3.9914 -4.1345 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 4.7463 2.8346 0.6224 30 1 4.7004 3.6657 -0.9906 31 1 5.2046 5.9521 -0.8684 32 1 4.7466 7.0073 0.4900 33 1 6.0900 5.8538 0.6726 34 1 1.5573 4.9925 1.7864 35 1 1.8748 6.6050 1.1029 36 1 0.7050 5.5190 0.3151 37 1 4.5448 1.2678 -0.0107 38 1 2.5847 -3.0956 0.5148 39 1 0.8914 -2.5470 0.5141 40 1 0.7195 -5.9632 -0.8497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897852195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:28 Heat of formation + Delta-G solvation = 43.323135 kcal Electronic energy + Delta-G solvation = -21494.049948 eV Core-core repulsion = 18310.602989 eV Total energy + Delta-G solvation = -3183.446958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40212 -41.22960 -38.72170 -35.84050 -33.98468 -32.91073 -32.37138 -31.22673 -29.26562 -28.44076 -27.14062 -25.49690 -24.07721 -23.14506 -21.45832 -20.73692 -19.72424 -18.87593 -18.03368 -16.95383 -16.84895 -16.53265 -16.43558 -15.76527 -15.33826 -15.13146 -14.69031 -14.50694 -14.28962 -14.10862 -13.84630 -13.71737 -13.63017 -13.28380 -13.11949 -12.99534 -12.71591 -12.64472 -12.58989 -12.38830 -12.28383 -12.11412 -11.89939 -11.69657 -11.01439 -10.77662 -10.65508 -10.30510 -9.79387 -9.37043 -8.39539 -6.56404 0.64674 1.27852 1.36978 1.37977 1.46385 1.59440 2.02001 2.31234 2.51616 2.92424 3.34419 3.56574 3.70150 3.97714 4.05539 4.11196 4.16893 4.29718 4.36824 4.48588 4.52481 4.56629 4.59704 4.74286 4.78771 4.86383 4.87546 5.02095 5.07556 5.12249 5.13000 5.20725 5.32610 5.40533 5.46810 5.58384 5.66188 5.72467 6.01285 6.52007 6.77197 6.82311 7.14679 7.31435 8.68303 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031882 B = 0.003884 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.014437 B = 7206.751987 C = 7486.959019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.143 3.857 3 C -0.328 4.328 4 C 0.626 3.374 5 O -0.585 6.585 6 N -0.650 5.650 7 C 0.089 3.911 8 C -0.104 4.104 9 H 0.105 0.895 10 C -0.135 4.135 11 C 0.127 3.873 12 H 0.102 0.898 13 C -0.147 4.147 14 C 0.074 3.926 15 N -0.335 5.335 16 N -0.337 5.337 17 C 0.267 3.733 18 C -0.558 4.558 19 H 0.051 0.949 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.267 1.267 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.094 0.906 36 H 0.041 0.959 37 H 0.221 0.779 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 21.291 2.127 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.008 3.992 3 C -0.343 4.343 4 C 0.419 3.581 5 O -0.467 6.467 6 N -0.385 5.385 7 C -0.033 4.033 8 C -0.123 4.123 9 H 0.124 0.876 10 C -0.193 4.193 11 C 0.025 3.975 12 H 0.120 0.880 13 C -0.205 4.205 14 C -0.112 4.112 15 N -0.155 5.155 16 N -0.114 5.114 17 C 0.149 3.851 18 C -0.596 4.596 19 H 0.069 0.931 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.192 1.192 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.060 0.940 37 H 0.237 0.763 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.883 19.805 2.197 21.081 hybrid contribution -0.774 -0.341 -0.766 1.141 sum 6.109 19.464 1.432 20.450 Atomic orbital electron populations 1.20531 0.85817 1.03987 1.03880 1.21945 0.95944 0.86679 0.94674 1.19949 0.93363 0.92903 1.28058 1.16664 0.83942 0.82904 0.74627 1.90659 1.17445 1.84413 1.54178 1.49553 1.08663 1.07012 1.73229 1.23517 0.79614 0.98050 1.02139 1.23035 0.93876 0.94872 1.00511 0.87642 1.21641 0.98388 0.97516 1.01709 1.23074 0.95969 0.78483 0.99994 0.88028 1.21853 0.97798 1.01805 0.99064 1.24655 0.97711 0.91529 0.97322 1.77088 0.98377 1.14252 1.25737 1.49120 1.03326 1.07760 1.51167 1.19383 0.95301 0.72201 0.98223 1.21359 1.48207 0.98563 0.91492 0.93077 1.25740 0.93717 0.95854 1.02397 1.69988 1.44644 1.07644 1.33137 0.85392 0.78851 0.77714 0.78483 1.19756 1.19610 1.19201 0.89956 0.90869 0.88209 0.89515 0.87809 0.91649 0.91044 0.90792 0.93888 0.88704 0.93971 0.76317 0.94953 0.93165 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.28 9.57 71.24 0.68 -2.59 16 2 C 0.14 6.24 7.01 42.14 0.30 6.53 16 3 C -0.33 -12.71 6.13 -20.15 -0.12 -12.83 16 4 C 0.63 22.30 7.97 86.67 0.69 22.99 16 5 O -0.58 -23.88 15.04 -4.04 -0.06 -23.94 16 6 N -0.65 -16.71 3.56 -836.93 -2.98 -19.69 16 7 C 0.09 1.44 6.68 83.18 0.56 1.99 16 8 C -0.10 -1.28 4.26 -10.37 -0.04 -1.32 16 9 H 0.11 1.32 8.13 -2.39 -0.02 1.30 16 10 C -0.13 -0.92 9.73 71.98 0.70 -0.22 16 11 C 0.13 2.34 4.26 41.88 0.18 2.52 16 12 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 13 C -0.15 -2.90 9.26 71.98 0.67 -2.24 16 14 C 0.07 2.66 11.13 85.65 0.95 3.62 16 15 N -0.33 -15.01 12.50 -56.28 -0.70 -15.72 16 16 N -0.34 -16.16 3.56 -336.70 -1.20 -17.36 16 17 C 0.27 14.15 5.97 85.63 0.51 14.66 16 18 C -0.56 -31.34 9.39 25.60 0.24 -31.10 16 19 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 20 C 0.02 1.34 5.46 84.65 0.46 1.80 16 21 N -0.92 -51.81 13.29 21.45 0.28 -51.53 16 22 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 27 H 0.07 2.78 7.05 -2.38 -0.02 2.77 16 28 H 0.10 3.72 6.50 -2.39 -0.02 3.70 16 29 H 0.09 1.32 6.15 -2.38 -0.01 1.31 16 30 H 0.10 1.33 8.03 -2.39 -0.02 1.32 16 31 H 0.06 0.41 8.04 -2.39 -0.02 0.39 16 32 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.22 5.57 5.22 -2.91 -0.02 5.55 16 38 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 2.66 7.02 -2.39 -0.02 2.64 16 40 H 0.28 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -70.11 332.98 4.17 -65.94 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 1.04 Total: 13.39 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: 5.77 Total: 3.80 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -4.60 Total: -104.29 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.06 Total: -23.94 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.11 4.17 -65.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897852195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.266 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds