Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38041 * 126.29433 * 2 1 4 4 C 1.47427 * 126.41392 * 359.97438 * 3 2 1 5 5 O 1.21597 * 119.99932 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99613 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99557 * 180.02562 * 6 4 3 8 8 H 1.08999 * 115.55503 * 350.66126 * 7 6 4 9 9 C 1.52996 * 117.50027 * 136.37640 * 7 6 4 10 10 C 1.52999 * 60.00195 * 107.48500 * 9 7 6 11 11 C 1.52995 * 117.49856 * 252.51191 * 10 9 7 12 12 C 1.53005 * 117.51700 * 107.47990 * 10 9 7 13 13 C 1.41297 * 107.17138 * 180.02562 * 3 2 1 14 14 N 1.30454 * 108.02067 * 359.71713 * 13 3 2 15 15 N 1.34261 * 126.28817 * 179.97438 * 2 1 3 16 16 C 1.46506 * 125.75585 * 0.02562 * 15 2 1 17 17 C 1.50696 * 109.46871 * 89.99536 * 16 15 2 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08998 * 109.47242 * 270.00682 * 1 2 3 26 26 H 1.09001 * 109.46941 * 29.99893 * 1 2 3 27 27 H 1.08994 * 109.47292 * 150.00144 * 1 2 3 28 28 H 0.96996 * 120.00334 * 359.97438 * 6 4 3 29 29 H 1.09002 * 117.50250 * 214.97220 * 9 7 6 30 30 H 1.08999 * 117.50090 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46999 * 128.62513 * 11 10 9 32 32 H 1.09008 * 109.46821 * 248.62048 * 11 10 9 33 33 H 1.08996 * 109.47783 * 8.61671 * 11 10 9 34 34 H 1.09003 * 109.47015 * 351.37339 * 12 10 9 35 35 H 1.09001 * 109.47067 * 111.36816 * 12 10 9 36 36 H 1.08997 * 109.46941 * 231.37370 * 12 10 9 37 37 H 1.07995 * 125.99113 * 180.02562 * 13 3 2 38 38 H 1.09005 * 109.46943 * 329.99857 * 16 15 2 39 39 H 1.09002 * 109.47064 * 210.00120 * 16 15 2 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8002 3.5106 -0.0010 7 6 2.3647 4.9093 -0.0009 8 1 1.2984 5.0699 -0.1601 9 6 3.0931 5.8760 0.9350 10 6 3.3290 5.9494 -0.5750 11 6 4.6741 5.4489 -1.1049 12 6 2.7226 7.1350 -1.3284 13 6 3.6591 0.6497 -0.0006 14 7 3.6340 -0.6546 0.0052 15 7 2.3016 -1.0822 0.0005 16 6 1.8500 -2.4759 0.0006 17 6 1.6955 -2.9539 -1.4202 18 1 1.9125 -2.2866 -2.2411 19 6 1.2772 -4.2434 -1.6720 20 7 1.1429 -4.6608 -2.9120 21 14 0.9012 -5.3974 -0.2521 22 1 2.1332 -6.1356 0.1254 23 1 0.4196 -4.6103 0.9114 24 1 -0.1482 -6.3639 -0.6644 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 3.7464 3.2972 -0.0006 29 1 2.5060 6.6726 1.3919 30 1 3.8960 5.4712 1.5510 31 1 4.5043 4.7370 -1.9126 32 1 5.2534 6.2927 -1.4801 33 1 5.2231 4.9608 -0.2997 34 1 2.0634 7.6906 -0.6613 35 1 3.5208 7.7896 -1.6784 36 1 2.1517 6.7695 -2.1819 37 1 4.5450 1.2674 -0.0004 38 1 0.8911 -2.5471 0.5141 39 1 2.5844 -3.0958 0.5148 40 1 0.8489 -5.5680 -3.0891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897971721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 47.874876 kcal Electronic energy + Delta-G solvation = -21099.343807 eV Core-core repulsion = 17916.094227 eV Total energy + Delta-G solvation = -3183.249580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89174 -39.49725 -37.71385 -33.99120 -33.20105 -32.10817 -31.27639 -29.22288 -27.90935 -27.63581 -26.72676 -23.45946 -22.58454 -21.52239 -19.91104 -19.51193 -18.80160 -17.23221 -17.11885 -16.14275 -15.30094 -14.97459 -14.43396 -14.38391 -14.28909 -14.02295 -13.70941 -13.55744 -12.98726 -12.72555 -12.70408 -12.55222 -12.44957 -12.25663 -12.10580 -11.93890 -11.60960 -11.42155 -11.24381 -11.05907 -10.85316 -10.39908 -10.27486 -9.94599 -9.80655 -9.45393 -8.86076 -8.68459 -8.63701 -7.97288 -6.34026 -4.38978 2.09257 2.69649 3.01195 3.11421 3.16440 3.20382 3.42223 3.52194 3.95755 4.14634 4.48578 4.65308 4.73500 4.84960 4.89596 5.03169 5.16230 5.37130 5.41712 5.47956 5.57972 5.65073 5.66455 5.69265 5.70441 5.79693 5.92110 5.95443 6.02341 6.07630 6.27511 6.40874 6.50864 6.58907 6.64717 7.00362 7.17004 7.54826 7.70741 8.18726 8.25972 8.56650 8.69413 9.19741 10.78157 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.003518 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.949754 B = 7957.548976 C = 8090.225940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.171 3.829 3 C -0.330 4.330 4 C 0.608 3.392 5 O -0.553 6.553 6 N -0.704 5.704 7 C 0.098 3.902 8 H 0.136 0.864 9 C -0.189 4.189 10 C -0.142 4.142 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.292 5.292 15 N -0.314 5.314 16 C 0.224 3.776 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.081 3.919 20 N -0.882 5.882 21 Si 0.874 3.126 22 H -0.270 1.270 23 H -0.264 1.264 24 H -0.279 1.279 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.399 0.601 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.176 0.824 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 18.695 6.906 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.034 3.966 3 C -0.345 4.345 4 C 0.399 3.601 5 O -0.432 6.432 6 N -0.354 5.354 7 C -0.009 4.009 8 H 0.154 0.846 9 C -0.228 4.228 10 C -0.144 4.144 11 C -0.176 4.176 12 C -0.171 4.171 13 C -0.127 4.127 14 N -0.112 5.112 15 N -0.090 5.090 16 C 0.106 3.894 17 C -0.585 4.585 18 H 0.100 0.900 19 C -0.124 4.124 20 N -0.519 5.519 21 Si 0.700 3.300 22 H -0.195 1.195 23 H -0.188 1.188 24 H -0.204 1.204 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.233 0.767 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.193 0.807 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.604 17.412 6.783 19.031 hybrid contribution 0.053 -0.120 0.566 0.581 sum 3.657 17.292 7.349 19.142 Atomic orbital electron populations 1.20652 0.86712 1.05210 1.03250 1.21462 0.94983 0.86309 0.93834 1.19648 0.93144 0.92466 1.29255 1.17265 0.84990 0.83754 0.74130 1.90683 1.16680 1.84356 1.51496 1.45107 1.09632 1.04130 1.76523 1.21673 0.97870 0.78703 1.02621 0.84626 1.23751 1.03874 1.02787 0.92340 1.22048 0.97770 0.99109 0.95429 1.21330 0.93942 1.01271 1.01054 1.21341 1.00406 0.95489 0.99854 1.23731 0.96377 0.92553 0.99999 1.77143 0.98152 1.12359 1.23536 1.48913 1.02730 1.07554 1.49814 1.20167 0.95757 0.73292 1.00218 1.21101 1.48103 0.99253 0.90020 0.89999 1.24798 0.94269 0.97410 0.95884 1.69866 1.45130 1.18196 1.18680 0.86887 0.79096 0.81490 0.82550 1.19521 1.18822 1.20390 0.90456 0.88339 0.89780 0.76652 0.88265 0.88621 0.91743 0.91922 0.92458 0.92321 0.92075 0.91976 0.80662 0.92939 0.93125 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.34 36.01 0.34 -1.44 16 2 C 0.17 3.43 7.01 -81.60 -0.57 2.86 16 3 C -0.33 -5.97 6.13 -105.07 -0.64 -6.61 16 4 C 0.61 10.09 7.81 -12.52 -0.10 9.99 16 5 O -0.55 -10.50 14.40 5.28 0.08 -10.43 16 6 N -0.70 -8.84 5.33 -54.88 -0.29 -9.13 16 7 C 0.10 1.09 6.13 -67.93 -0.42 0.67 16 8 H 0.14 1.70 7.40 -51.93 -0.38 1.32 16 9 C -0.19 -1.64 9.75 -26.73 -0.26 -1.90 16 10 C -0.14 -1.24 2.70 -154.51 -0.42 -1.65 16 11 C -0.12 -0.93 8.85 37.15 0.33 -0.60 16 12 C -0.11 -0.86 9.85 37.16 0.37 -0.50 16 13 C 0.06 1.04 11.50 -16.97 -0.20 0.84 16 14 N -0.29 -6.15 12.50 30.86 0.39 -5.77 16 15 N -0.31 -6.92 3.56 -57.77 -0.21 -7.12 16 16 C 0.22 5.21 4.85 -5.19 -0.03 5.19 16 17 C -0.55 -14.94 9.94 -34.44 -0.34 -15.29 16 18 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 19 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 20 N -0.88 -25.78 13.96 55.43 0.77 -25.01 16 21 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.10 1.74 6.50 -51.93 -0.34 1.41 16 27 H 0.08 1.54 7.70 -51.93 -0.40 1.14 16 28 H 0.40 4.12 6.65 -40.82 -0.27 3.85 16 29 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.10 0.79 8.05 -51.93 -0.42 0.37 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.43 7.92 -51.92 -0.41 0.02 16 33 H 0.06 0.40 7.61 -51.93 -0.40 0.01 16 34 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 35 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.18 2.13 7.50 -52.49 -0.39 1.74 16 38 H 0.05 1.14 6.68 -51.93 -0.35 0.79 16 39 H 0.05 1.16 7.57 -51.93 -0.39 0.77 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -31.73 335.55 -6.76 -38.49 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.85 Total: 5.17 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -2.04 Total: -6.31 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.66 Total: -47.03 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.73 -6.76 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897971721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.367 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds