Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38041 * 126.29433 * 2 1 4 4 C 1.47427 * 126.41392 * 359.97438 * 3 2 1 5 5 O 1.21597 * 119.99932 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99613 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99557 * 180.02562 * 6 4 3 8 8 H 1.08999 * 115.55503 * 350.66126 * 7 6 4 9 9 C 1.52996 * 117.50027 * 136.37640 * 7 6 4 10 10 C 1.52999 * 60.00195 * 107.48500 * 9 7 6 11 11 C 1.52995 * 117.49856 * 252.51191 * 10 9 7 12 12 C 1.53005 * 117.51700 * 107.47990 * 10 9 7 13 13 C 1.41297 * 107.17138 * 180.02562 * 3 2 1 14 14 N 1.30454 * 108.02067 * 359.71713 * 13 3 2 15 15 N 1.34261 * 126.28817 * 179.97438 * 2 1 3 16 16 C 1.46506 * 125.75585 * 0.02562 * 15 2 1 17 17 C 1.50696 * 109.46871 * 89.99536 * 16 15 2 18 18 H 1.07999 * 120.00319 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99717 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 H 1.08998 * 109.47242 * 270.00682 * 1 2 3 26 26 H 1.09001 * 109.46941 * 29.99893 * 1 2 3 27 27 H 1.08994 * 109.47292 * 150.00144 * 1 2 3 28 28 H 0.96996 * 120.00334 * 359.97438 * 6 4 3 29 29 H 1.09002 * 117.50250 * 214.97220 * 9 7 6 30 30 H 1.08999 * 117.50090 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.46999 * 128.62513 * 11 10 9 32 32 H 1.09008 * 109.46821 * 248.62048 * 11 10 9 33 33 H 1.08996 * 109.47783 * 8.61671 * 11 10 9 34 34 H 1.09003 * 109.47015 * 351.37339 * 12 10 9 35 35 H 1.09001 * 109.47067 * 111.36816 * 12 10 9 36 36 H 1.08997 * 109.46941 * 231.37370 * 12 10 9 37 37 H 1.07995 * 125.99113 * 180.02562 * 13 3 2 38 38 H 1.09005 * 109.46943 * 329.99857 * 16 15 2 39 39 H 1.09002 * 109.47064 * 210.00120 * 16 15 2 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5202 -0.0005 5 8 0.6997 2.7877 -0.0006 6 7 2.8002 3.5106 -0.0010 7 6 2.3647 4.9093 -0.0009 8 1 1.2984 5.0699 -0.1601 9 6 3.0931 5.8760 0.9350 10 6 3.3290 5.9494 -0.5750 11 6 4.6741 5.4489 -1.1049 12 6 2.7226 7.1350 -1.3284 13 6 3.6591 0.6497 -0.0006 14 7 3.6340 -0.6546 0.0052 15 7 2.3016 -1.0822 0.0005 16 6 1.8500 -2.4759 0.0006 17 6 1.6955 -2.9539 -1.4202 18 1 1.9125 -2.2866 -2.2411 19 6 1.2772 -4.2434 -1.6720 20 7 1.1429 -4.6608 -2.9120 21 14 0.9012 -5.3974 -0.2521 22 1 2.1332 -6.1356 0.1254 23 1 0.4196 -4.6103 0.9114 24 1 -0.1482 -6.3639 -0.6644 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 3.7464 3.2972 -0.0006 29 1 2.5060 6.6726 1.3919 30 1 3.8960 5.4712 1.5510 31 1 4.5043 4.7370 -1.9126 32 1 5.2534 6.2927 -1.4801 33 1 5.2231 4.9608 -0.2997 34 1 2.0634 7.6906 -0.6613 35 1 3.5208 7.7896 -1.6784 36 1 2.1517 6.7695 -2.1819 37 1 4.5450 1.2674 -0.0004 38 1 0.8911 -2.5471 0.5141 39 1 2.5844 -3.0958 0.5148 40 1 0.8489 -5.5680 -3.0891 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897971721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 26.741496 kcal Electronic energy + Delta-G solvation = -21100.260219 eV Core-core repulsion = 17916.094227 eV Total energy + Delta-G solvation = -3184.165992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36527 -40.55374 -38.77827 -35.79698 -34.50740 -33.76376 -32.83843 -30.15728 -29.39220 -28.41626 -28.10409 -25.12987 -23.96378 -22.61120 -21.24965 -20.69294 -19.90006 -19.29030 -18.47103 -17.12532 -16.86798 -16.50304 -16.03697 -15.63101 -15.25139 -15.15620 -15.02572 -14.59007 -14.50296 -14.11714 -13.87624 -13.73627 -13.69698 -13.44946 -13.16879 -13.06876 -13.00998 -12.59609 -12.59002 -12.14980 -12.04181 -11.95456 -11.85893 -11.76633 -10.93155 -10.89501 -10.62869 -10.27960 -9.75858 -9.35179 -8.43941 -6.56305 0.62431 1.27763 1.33172 1.35912 1.44594 1.59791 2.23988 2.25498 2.42940 2.88524 2.95668 3.67862 3.70542 3.73273 3.94577 3.99916 4.08064 4.15648 4.21194 4.46781 4.48921 4.64721 4.69235 4.76697 4.81519 4.92303 4.96919 5.06466 5.07627 5.08896 5.10189 5.15764 5.17332 5.32741 5.45763 5.56080 5.65868 5.81888 6.19485 6.46891 6.59380 6.77642 7.07706 7.33872 8.72548 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036263 B = 0.003518 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.949754 B = 7957.548976 C = 8090.225940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.149 3.851 3 C -0.331 4.331 4 C 0.607 3.393 5 O -0.583 6.583 6 N -0.686 5.686 7 C 0.065 3.935 8 H 0.116 0.884 9 C -0.171 4.171 10 C -0.129 4.129 11 C -0.122 4.122 12 C -0.116 4.116 13 C 0.081 3.919 14 N -0.332 5.332 15 N -0.338 5.338 16 C 0.233 3.767 17 C -0.555 4.555 18 H 0.026 0.974 19 C 0.023 3.977 20 N -0.935 5.935 21 Si 0.950 3.050 22 H -0.263 1.263 23 H -0.234 1.234 24 H -0.275 1.275 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.411 0.589 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.226 0.774 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 20.123 9.119 22.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.014 3.986 3 C -0.346 4.346 4 C 0.396 3.604 5 O -0.464 6.464 6 N -0.335 5.335 7 C -0.041 4.041 8 H 0.134 0.866 9 C -0.209 4.209 10 C -0.131 4.131 11 C -0.179 4.179 12 C -0.173 4.173 13 C -0.107 4.107 14 N -0.151 5.151 15 N -0.115 5.115 16 C 0.114 3.886 17 C -0.593 4.593 18 H 0.044 0.956 19 C -0.177 4.177 20 N -0.573 5.573 21 Si 0.771 3.229 22 H -0.188 1.188 23 H -0.157 1.157 24 H -0.200 1.200 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.248 0.752 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.242 0.758 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.627 18.902 9.003 21.441 hybrid contribution -0.188 -0.353 -0.226 0.459 sum 4.438 18.549 8.777 20.995 Atomic orbital electron populations 1.20636 0.85702 1.04349 1.04467 1.21975 0.96024 0.86624 0.93970 1.19941 0.93437 0.92983 1.28268 1.17124 0.85077 0.83813 0.74355 1.90667 1.17974 1.84646 1.53120 1.44905 1.09613 1.04174 1.74803 1.21771 0.97721 0.78234 1.06367 0.86614 1.23820 1.03233 1.01438 0.92416 1.22159 0.97247 0.97877 0.95798 1.21390 0.93593 1.01736 1.01164 1.21391 1.00937 0.95350 0.99636 1.24486 0.97598 0.91645 0.96926 1.77086 0.98040 1.14365 1.25622 1.48776 1.03465 1.07319 1.51929 1.19915 0.96819 0.74515 0.97381 1.21197 1.48236 0.98897 0.90966 0.95604 1.25831 0.93588 0.99222 0.99073 1.70026 1.46586 1.19055 1.21613 0.85686 0.79168 0.78827 0.79204 1.18750 1.15735 1.19976 0.88165 0.88649 0.90990 0.75195 0.87117 0.87562 0.92688 0.90562 0.91337 0.91659 0.90614 0.92821 0.75820 0.90969 0.92567 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.34 9.34 71.24 0.67 -2.68 16 2 C 0.15 6.02 7.01 42.14 0.30 6.31 16 3 C -0.33 -11.73 6.13 -20.15 -0.12 -11.86 16 4 C 0.61 19.65 7.81 86.66 0.68 20.32 16 5 O -0.58 -22.13 14.40 -4.02 -0.06 -22.19 16 6 N -0.69 -16.00 5.33 -445.81 -2.38 -18.38 16 7 C 0.06 1.34 6.13 44.99 0.28 1.62 16 8 H 0.12 2.89 7.40 -2.39 -0.02 2.87 16 9 C -0.17 -2.47 9.75 30.59 0.30 -2.17 16 10 C -0.13 -1.93 2.70 -52.18 -0.14 -2.08 16 11 C -0.12 -1.55 8.85 71.98 0.64 -0.91 16 12 C -0.12 -1.51 9.85 71.98 0.71 -0.80 16 13 C 0.08 2.62 11.50 85.65 0.99 3.61 16 14 N -0.33 -13.83 12.50 -56.27 -0.70 -14.53 16 15 N -0.34 -15.00 3.56 -336.68 -1.20 -16.19 16 16 C 0.23 10.84 4.85 85.63 0.42 11.26 16 17 C -0.55 -31.42 9.94 25.60 0.25 -31.16 16 18 H 0.03 1.70 8.06 -2.91 -0.02 1.67 16 19 C 0.02 1.29 5.47 84.66 0.46 1.75 16 20 N -0.93 -56.51 13.96 21.45 0.30 -56.21 16 21 Si 0.95 40.32 27.47 68.60 1.88 42.21 16 22 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.23 -8.78 6.54 99.48 0.65 -8.13 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 25 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 26 H 0.09 3.45 6.50 -2.39 -0.02 3.43 16 27 H 0.07 2.70 7.70 -2.39 -0.02 2.68 16 28 H 0.41 7.34 6.65 -92.71 -0.62 6.73 16 29 H 0.11 1.38 8.05 -2.39 -0.02 1.36 16 30 H 0.11 1.35 8.05 -2.39 -0.02 1.34 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.79 7.92 -2.38 -0.02 0.77 16 33 H 0.07 0.72 7.61 -2.39 -0.02 0.70 16 34 H 0.06 0.76 7.90 -2.39 -0.02 0.74 16 35 H 0.07 0.78 7.92 -2.39 -0.02 0.76 16 36 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.23 4.65 7.50 -2.91 -0.02 4.63 16 38 H 0.07 3.04 6.68 -2.38 -0.02 3.02 16 39 H 0.06 2.53 7.57 -2.39 -0.02 2.51 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -72.34 335.55 3.63 -68.71 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.38 Total: 23.39 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 5.41 Total: -6.79 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.98 Total: -105.32 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.88 Total: 42.21 kcal Total: -72.34 3.63 -68.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897971721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.447 kcal (2) G-P(sol) polarization free energy of solvation -72.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds