Wall clock time and date at job start Mon Mar 30 2020 02:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38595 * 120.80047 * 2 1 4 4 N 1.32331 * 119.10806 * 179.97438 * 3 2 1 5 5 C 1.31799 * 120.81216 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.11957 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46949 * 90.00105 * 6 5 4 8 8 C 1.34769 * 120.00237 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99855 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00461 * 180.02562 * 8 7 6 11 11 C 1.52996 * 109.47592 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47343 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00257 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47485 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47293 * 119.99809 * 18 16 14 21 21 H 1.48505 * 109.46854 * 239.99748 * 18 16 14 22 22 N 1.31790 * 121.75781 * 0.27541 * 5 4 3 23 23 C 1.32332 * 120.81676 * 359.44568 * 22 5 4 24 24 H 1.09002 * 109.46701 * 90.00067 * 1 2 3 25 25 H 1.08997 * 109.47029 * 210.00185 * 1 2 3 26 26 H 1.09000 * 109.47199 * 330.00989 * 1 2 3 27 27 H 1.08009 * 120.44641 * 359.94848 * 3 2 1 28 28 H 1.09000 * 109.47318 * 209.99491 * 6 5 4 29 29 H 1.09000 * 109.47161 * 330.00122 * 6 5 4 30 30 H 0.97010 * 119.99909 * 359.97438 * 7 6 5 31 31 H 1.08996 * 109.47077 * 300.00146 * 10 8 7 32 32 H 1.09004 * 109.46818 * 59.99313 * 10 8 7 33 33 H 1.09004 * 109.47108 * 300.00035 * 11 10 8 34 34 H 1.09000 * 109.46870 * 59.99930 * 11 10 8 35 35 H 1.09000 * 109.46497 * 299.99836 * 12 11 10 36 36 H 1.08996 * 109.46876 * 60.00226 * 12 11 10 37 37 H 1.08996 * 109.47452 * 300.00062 * 13 12 11 38 38 H 1.09000 * 109.47054 * 59.99902 * 13 12 11 39 39 H 0.97002 * 120.00075 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.44920 * 180.30000 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1514 0.0005 5 6 4.1809 0.0000 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1762 0.0012 1.3827 8 6 7.5012 0.0019 1.6291 9 8 8.2894 0.0011 0.7072 10 6 8.0036 0.0026 3.0499 11 6 9.5336 0.0027 3.0500 12 6 10.0436 0.0028 4.4925 13 6 11.5735 0.0022 4.4925 14 6 12.0758 0.0029 5.9133 15 1 11.3740 0.0040 6.7342 16 6 13.4314 0.0031 6.1652 17 7 14.2860 0.0023 5.1657 18 14 14.0540 0.0032 7.9264 19 1 12.8990 0.0037 8.8598 20 1 14.8791 -1.2092 8.1599 21 1 14.8788 1.2159 8.1598 22 7 3.5395 -1.1513 -0.0033 23 6 2.2167 -1.1905 0.0016 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 1.6972 2.1374 -0.0008 28 1 6.0513 -0.8905 -0.5115 29 1 6.0512 0.8895 -0.5131 30 1 5.5458 0.0022 2.1201 31 1 7.6398 0.8925 3.5634 32 1 7.6406 -0.8874 3.5640 33 1 9.8970 -0.8875 2.5365 34 1 9.8968 0.8925 2.5357 35 1 9.6801 0.8928 5.0062 36 1 9.6803 -0.8873 5.0062 37 1 11.9366 -0.8879 3.9788 38 1 11.9371 0.8920 3.9785 39 1 15.2397 0.0020 5.3430 40 1 1.6972 -2.1374 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910663397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:52 Heat of formation + Delta-G solvation = -17.694263 kcal Electronic energy + Delta-G solvation = -19700.003890 eV Core-core repulsion = 16513.911018 eV Total energy + Delta-G solvation = -3186.092871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.64955 -39.57246 -35.69528 -34.79439 -34.23371 -33.78678 -32.57687 -30.19369 -28.98449 -26.34994 -25.19386 -25.06238 -22.67292 -22.02754 -20.33374 -19.92006 -18.29587 -17.73378 -16.58100 -16.15220 -16.03260 -15.70528 -15.15664 -14.96092 -14.41052 -14.40383 -14.03351 -13.72456 -13.67893 -13.12393 -13.09705 -12.95055 -12.56888 -12.01996 -11.65053 -11.56149 -11.38235 -11.34405 -10.96153 -10.48707 -10.45422 -10.36365 -10.02371 -9.70744 -9.64792 -9.56550 -9.20424 -9.17448 -8.92910 -8.27208 -5.91807 -3.94050 0.24225 0.57601 2.75889 2.87122 3.29595 3.35614 3.42642 3.46752 3.57552 3.64637 4.04255 4.20523 4.24537 4.51992 4.65135 4.91913 4.94778 4.95571 5.18846 5.27650 5.37552 5.41249 5.43612 5.46519 5.47479 5.85771 5.91243 6.19703 6.21876 6.36098 6.44297 6.60400 6.89736 7.07637 7.24855 7.40358 7.57183 7.78668 7.94942 8.10165 8.26473 8.52017 9.13969 9.69385 11.19538 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047213 B = 0.002147 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.908939 B =13035.917736 C =13320.335561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.189 4.189 3 C 0.146 3.854 4 N -0.499 5.499 5 C 0.296 3.704 6 C 0.191 3.809 7 N -0.731 5.731 8 C 0.517 3.483 9 O -0.532 6.532 10 C -0.137 4.137 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 N -0.499 5.499 23 C 0.146 3.854 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.170 0.830 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.667 -0.004 -11.119 33.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.193 4.193 3 C -0.020 4.020 4 N -0.212 5.212 5 C 0.028 3.972 6 C 0.066 3.934 7 N -0.385 5.385 8 C 0.304 3.696 9 O -0.407 6.407 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 N -0.212 5.212 23 C -0.020 4.020 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.188 0.812 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.069 0.931 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -29.862 -0.006 -11.855 32.129 hybrid contribution -1.015 0.002 1.247 1.608 sum -30.877 -0.003 -10.609 32.649 Atomic orbital electron populations 1.20687 0.88861 1.03782 1.03106 1.21820 0.99388 0.95682 1.02430 1.23249 0.89393 0.98447 0.90920 1.68301 1.10072 1.30346 1.12488 1.23135 0.97593 0.83671 0.92819 1.19849 0.83489 1.04559 0.85491 1.45937 1.07759 1.77556 1.07249 1.21100 0.80955 0.74834 0.92677 1.90718 1.54954 1.48407 1.46639 1.21789 0.99896 1.04062 0.91914 1.21461 0.90452 1.03050 0.99182 1.21650 1.00027 1.00064 0.93061 1.19106 0.88580 0.97357 0.96782 1.21329 0.91542 1.50175 0.92686 0.92711 1.25049 0.97156 0.95529 0.96920 1.69985 1.01897 1.51075 1.30485 0.86557 0.78811 0.77514 0.85222 1.19805 1.21074 1.21080 1.68296 1.10075 1.30349 1.12486 1.23250 0.89390 0.98446 0.90921 0.90371 0.90703 0.90705 0.81250 0.88813 0.88820 0.76702 0.89076 0.89076 0.91719 0.91717 0.93482 0.93484 0.96543 0.96551 0.93127 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.21 10.06 36.01 0.36 0.15 16 2 C -0.19 -0.99 5.91 -104.35 -0.62 -1.61 16 3 C 0.15 0.96 11.01 -17.21 -0.19 0.77 16 4 N -0.50 -4.82 10.34 -10.72 -0.11 -4.93 16 5 C 0.30 3.02 7.01 -157.19 -1.10 1.92 16 6 C 0.19 2.14 6.11 -5.19 -0.03 2.11 16 7 N -0.73 -8.35 5.55 -61.47 -0.34 -8.69 16 8 C 0.52 7.55 7.83 -10.99 -0.09 7.46 16 9 O -0.53 -9.93 15.98 5.56 0.09 -9.84 16 10 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 11 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 12 C -0.11 -2.33 5.15 -26.73 -0.14 -2.46 16 13 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 14 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 15 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -27.83 13.29 55.43 0.74 -27.10 16 18 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 N -0.50 -4.82 10.33 -10.72 -0.11 -4.93 16 23 C 0.15 0.96 11.01 -17.20 -0.19 0.77 16 24 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.07 0.09 8.10 -51.93 -0.42 -0.33 16 26 H 0.07 0.09 8.10 -51.93 -0.42 -0.33 16 27 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.40 3.74 8.46 -40.82 -0.35 3.39 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 34 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 40 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -35.87 346.50 -8.58 -44.45 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.22 Total: -2.75 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -2.82 Total: -8.58 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.17 Total: -45.65 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.84 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.87 -8.58 -44.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910663397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.754 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds