Wall clock time and date at job start Mon Mar 30 2020 02:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38595 * 120.80047 * 2 1 4 4 N 1.32331 * 119.10806 * 179.97438 * 3 2 1 5 5 C 1.31799 * 120.81216 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.11957 * 179.97438 * 5 4 3 7 7 N 1.46500 * 109.46949 * 90.00105 * 6 5 4 8 8 C 1.34769 * 120.00237 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99855 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.00461 * 180.02562 * 8 7 6 11 11 C 1.52996 * 109.47592 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47343 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.46969 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46861 * 179.97438 * 13 12 11 15 15 H 1.07996 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00257 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99622 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47485 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47293 * 119.99809 * 18 16 14 21 21 H 1.48505 * 109.46854 * 239.99748 * 18 16 14 22 22 N 1.31790 * 121.75781 * 0.27541 * 5 4 3 23 23 C 1.32332 * 120.81676 * 359.44568 * 22 5 4 24 24 H 1.09002 * 109.46701 * 90.00067 * 1 2 3 25 25 H 1.08997 * 109.47029 * 210.00185 * 1 2 3 26 26 H 1.09000 * 109.47199 * 330.00989 * 1 2 3 27 27 H 1.08009 * 120.44641 * 359.94848 * 3 2 1 28 28 H 1.09000 * 109.47318 * 209.99491 * 6 5 4 29 29 H 1.09000 * 109.47161 * 330.00122 * 6 5 4 30 30 H 0.97010 * 119.99909 * 359.97438 * 7 6 5 31 31 H 1.08996 * 109.47077 * 300.00146 * 10 8 7 32 32 H 1.09004 * 109.46818 * 59.99313 * 10 8 7 33 33 H 1.09004 * 109.47108 * 300.00035 * 11 10 8 34 34 H 1.09000 * 109.46870 * 59.99930 * 11 10 8 35 35 H 1.09000 * 109.46497 * 299.99836 * 12 11 10 36 36 H 1.08996 * 109.46876 * 60.00226 * 12 11 10 37 37 H 1.08996 * 109.47452 * 300.00062 * 13 12 11 38 38 H 1.09000 * 109.47054 * 59.99902 * 13 12 11 39 39 H 0.97002 * 120.00075 * 180.02562 * 17 16 14 40 40 H 1.08007 * 120.44920 * 180.30000 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5395 1.1514 0.0005 5 6 4.1809 0.0000 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1762 0.0012 1.3827 8 6 7.5012 0.0019 1.6291 9 8 8.2894 0.0011 0.7072 10 6 8.0036 0.0026 3.0499 11 6 9.5336 0.0027 3.0500 12 6 10.0436 0.0028 4.4925 13 6 11.5735 0.0022 4.4925 14 6 12.0758 0.0029 5.9133 15 1 11.3740 0.0040 6.7342 16 6 13.4314 0.0031 6.1652 17 7 14.2860 0.0023 5.1657 18 14 14.0540 0.0032 7.9264 19 1 12.8990 0.0037 8.8598 20 1 14.8791 -1.2092 8.1599 21 1 14.8788 1.2159 8.1598 22 7 3.5395 -1.1513 -0.0033 23 6 2.2167 -1.1905 0.0016 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5137 27 1 1.6972 2.1374 -0.0008 28 1 6.0513 -0.8905 -0.5115 29 1 6.0512 0.8895 -0.5131 30 1 5.5458 0.0022 2.1201 31 1 7.6398 0.8925 3.5634 32 1 7.6406 -0.8874 3.5640 33 1 9.8970 -0.8875 2.5365 34 1 9.8968 0.8925 2.5357 35 1 9.6801 0.8928 5.0062 36 1 9.6803 -0.8873 5.0062 37 1 11.9366 -0.8879 3.9788 38 1 11.9371 0.8920 3.9785 39 1 15.2397 0.0020 5.3430 40 1 1.6972 -2.1374 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910663397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:51 Heat of formation + Delta-G solvation = -42.579427 kcal Electronic energy + Delta-G solvation = -19701.082991 eV Core-core repulsion = 16513.911018 eV Total energy + Delta-G solvation = -3187.171973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22952 -40.73513 -36.81845 -36.29541 -34.81422 -34.62273 -34.43574 -31.70724 -29.96584 -27.61352 -26.27543 -25.70995 -24.08763 -22.95050 -21.81810 -21.37412 -18.87475 -18.58134 -18.40824 -17.54580 -16.94849 -16.87000 -16.47240 -15.79322 -15.71964 -15.38341 -14.85168 -14.66689 -14.54150 -14.19087 -14.11499 -13.70288 -13.57057 -13.50624 -13.26233 -13.15928 -12.83494 -12.31026 -12.14268 -12.13103 -11.96352 -11.92955 -11.36560 -11.36203 -11.17323 -10.89141 -10.54853 -10.28703 -10.24729 -10.21731 -8.17913 -6.29958 -0.31331 0.06589 1.40700 1.41844 1.55323 1.60577 2.01721 2.42533 2.65577 2.84339 3.12303 3.14671 3.63136 3.77459 3.87508 3.89576 4.04673 4.15229 4.15731 4.34808 4.53396 4.69013 4.69123 4.73598 4.83679 4.84415 4.89523 5.05338 5.13661 5.20707 5.22341 5.34468 5.40484 5.43287 5.58454 5.79685 5.89376 5.91354 6.26428 6.41649 6.88692 6.98480 7.17175 7.39468 8.94509 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.047213 B = 0.002147 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.908939 B =13035.917736 C =13320.335561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.522 5.522 5 C 0.278 3.722 6 C 0.195 3.805 7 N -0.712 5.712 8 C 0.517 3.483 9 O -0.582 6.582 10 C -0.126 4.126 11 C -0.096 4.096 12 C -0.096 4.096 13 C 0.017 3.983 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.008 4.008 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.257 1.257 20 H -0.279 1.279 21 H -0.279 1.279 22 N -0.522 5.522 23 C 0.134 3.866 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.198 0.802 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.412 0.588 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.061 0.939 37 H -0.015 1.015 38 H -0.015 1.015 39 H 0.263 0.737 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.946 -0.003 -9.350 36.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.174 4.174 3 C -0.032 4.032 4 N -0.236 5.236 5 C 0.010 3.990 6 C 0.069 3.931 7 N -0.366 5.366 8 C 0.306 3.694 9 O -0.461 6.461 10 C -0.165 4.165 11 C -0.134 4.134 12 C -0.133 4.133 13 C -0.020 4.020 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.181 1.181 20 H -0.205 1.205 21 H -0.205 1.205 22 N -0.236 5.236 23 C -0.032 4.032 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.215 0.785 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.248 0.752 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.071 0.929 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -33.214 -0.005 -10.070 34.708 hybrid contribution -0.118 0.002 0.621 0.633 sum -33.333 -0.003 -9.449 34.646 Atomic orbital electron populations 1.20794 0.86126 1.05113 1.04152 1.22172 1.01100 0.94600 0.99563 1.23815 0.88535 1.00304 0.90520 1.68243 1.11800 1.30233 1.13286 1.22713 0.96823 0.84350 0.95087 1.19719 0.84970 1.03537 0.84861 1.45738 1.06938 1.75783 1.08091 1.21203 0.81536 0.74231 0.92456 1.90706 1.56366 1.51021 1.47999 1.21664 0.96144 1.06741 0.91965 1.21258 0.94051 1.01242 0.96897 1.21449 0.95532 1.01333 0.95024 1.19071 0.92984 0.94401 0.95525 1.21789 0.92276 1.50096 0.93703 0.91580 1.26109 0.97487 0.94843 1.02103 1.70139 1.02382 1.51946 1.33331 0.85318 0.78480 0.77671 0.79063 1.18114 1.20465 1.20473 1.68238 1.11804 1.30239 1.13284 1.23815 0.88532 1.00304 0.90520 0.89220 0.89399 0.89402 0.78513 0.89854 0.89859 0.75167 0.86310 0.86315 0.93670 0.93664 0.92058 0.92062 0.99622 0.99633 0.92869 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.04 10.06 71.24 0.72 0.68 16 2 C -0.17 -1.35 5.91 -19.69 -0.12 -1.46 16 3 C 0.13 1.50 11.01 84.70 0.93 2.43 16 4 N -0.52 -9.70 10.34 -187.84 -1.94 -11.65 16 5 C 0.28 5.64 7.01 138.75 0.97 6.61 16 6 C 0.19 4.49 6.11 85.63 0.52 5.01 16 7 N -0.71 -15.98 5.55 -466.78 -2.59 -18.57 16 8 C 0.52 15.07 7.83 87.66 0.69 15.75 16 9 O -0.58 -22.58 15.98 -3.04 -0.05 -22.63 16 10 C -0.13 -3.28 5.70 29.85 0.17 -3.11 16 11 C -0.10 -3.59 4.50 30.59 0.14 -3.45 16 12 C -0.10 -4.01 5.15 30.59 0.16 -3.85 16 13 C 0.02 0.97 4.97 29.85 0.15 1.12 16 14 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 16 C -0.01 -0.50 5.46 84.66 0.46 -0.04 16 17 N -0.94 -59.71 13.29 21.45 0.28 -59.43 16 18 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 N -0.52 -9.71 10.33 -187.84 -1.94 -11.65 16 23 C 0.13 1.50 11.01 84.70 0.93 2.43 16 24 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.09 -0.13 8.10 -2.39 -0.02 -0.15 16 26 H 0.09 -0.13 8.10 -2.39 -0.02 -0.15 16 27 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 30 H 0.41 7.14 8.46 -92.70 -0.78 6.35 16 31 H 0.12 2.50 8.14 -2.39 -0.02 2.49 16 32 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 34 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 37 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 39 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -80.84 346.50 1.99 -78.85 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.24 Total: 7.12 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 5.96 Total: -9.49 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -6.19 Total: -101.29 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -80.84 1.99 -78.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910663397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.273 kcal (2) G-P(sol) polarization free energy of solvation -80.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds