Wall clock time and date at job start Mon Mar 30 2020 01:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38620 * 120.44714 * 2 1 4 4 C 1.38570 * 118.40098 * 180.02562 * 3 2 1 5 5 N 1.32354 * 119.10587 * 359.97438 * 4 3 2 6 6 C 1.31788 * 120.81717 * 0.02562 * 5 4 3 7 7 C 1.50689 * 119.12295 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47769 * 89.99627 * 7 6 5 9 9 C 1.34775 * 120.00388 * 180.02562 * 8 7 6 10 10 O 1.21278 * 120.00079 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.00093 * 179.97438 * 9 8 7 12 12 C 1.52998 * 109.46968 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46741 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46741 * 180.02562 * 13 12 11 15 15 C 1.50705 * 109.46968 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99968 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00018 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00116 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47264 * 89.99849 * 19 17 15 21 21 H 1.48492 * 109.47366 * 209.99710 * 19 17 15 22 22 H 1.48500 * 109.47077 * 330.00071 * 19 17 15 23 23 N 1.31810 * 121.75378 * 359.70960 * 6 5 4 24 24 H 1.09001 * 109.46953 * 90.00117 * 1 2 3 25 25 H 1.09000 * 109.47318 * 209.99715 * 1 2 3 26 26 H 1.09000 * 109.47161 * 330.00345 * 1 2 3 27 27 H 1.08007 * 120.80019 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.45342 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47542 * 209.99895 * 7 6 5 30 30 H 1.09007 * 109.47401 * 329.99421 * 7 6 5 31 31 H 0.97006 * 119.99758 * 359.97438 * 8 7 6 32 32 H 1.09002 * 109.46510 * 299.99625 * 11 9 8 33 33 H 1.09002 * 109.46534 * 59.99311 * 11 9 8 34 34 H 1.09000 * 109.47042 * 299.99997 * 12 11 9 35 35 H 1.08999 * 109.47062 * 59.99828 * 12 11 9 36 36 H 1.08996 * 109.46818 * 299.99587 * 13 12 11 37 37 H 1.08994 * 109.47139 * 60.00185 * 13 12 11 38 38 H 1.08990 * 109.47499 * 299.99635 * 14 13 12 39 39 H 1.09008 * 109.47166 * 59.99968 * 14 13 12 40 40 H 0.96999 * 120.00236 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0331 -0.0005 6 6 3.4957 -1.1492 -0.0005 7 6 4.2205 -2.4703 -0.0011 8 7 4.4561 -2.8988 1.3799 9 6 5.0941 -4.0603 1.6256 10 8 5.4728 -4.7510 0.7035 11 6 5.3370 -4.5008 3.0462 12 6 6.0728 -5.8421 3.0455 13 6 6.3188 -6.2896 4.4879 14 6 7.0552 -7.6307 4.4871 15 6 7.2981 -8.0711 5.9078 16 1 6.9612 -7.4559 6.7289 17 6 7.9512 -9.2591 6.1591 18 7 8.3619 -10.0081 5.1592 19 14 8.2528 -9.8047 7.9200 20 1 7.1058 -10.6236 8.3879 21 1 9.4963 -10.6140 7.9814 22 1 8.3960 -8.6103 8.7907 23 7 2.1776 -1.1407 0.0052 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6900 2.1419 -0.0004 28 1 4.1746 2.0564 -0.0010 29 1 3.6149 -3.2169 -0.5148 30 1 5.1754 -2.3607 -0.5154 31 1 4.1536 -2.3462 2.1175 32 1 5.9426 -3.7539 3.5596 33 1 4.3823 -4.6106 3.5607 34 1 5.4669 -6.5887 2.5322 35 1 7.0274 -5.7326 2.5309 36 1 6.9246 -5.5431 5.0015 37 1 5.3640 -6.3992 5.0021 38 1 6.4499 -8.3774 3.9734 39 1 8.0101 -7.5206 3.9730 40 1 8.8210 -10.8441 5.3360 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911001130.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:50 Heat of formation + Delta-G solvation = -41.743018 kcal Electronic energy + Delta-G solvation = -19772.149278 eV Core-core repulsion = 16585.013575 eV Total energy + Delta-G solvation = -3187.135704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.21098 -40.73731 -36.80202 -36.25556 -35.34675 -34.60664 -33.58714 -31.58825 -29.69357 -28.75938 -27.08542 -24.59039 -24.06187 -23.02083 -21.81964 -21.36939 -18.79346 -18.42156 -18.27058 -17.45097 -16.95233 -16.87282 -16.49081 -16.05012 -15.81129 -15.71874 -14.86583 -14.54012 -14.51332 -14.16921 -13.96686 -13.77350 -13.58005 -13.49648 -13.26397 -13.15261 -12.80800 -12.33750 -12.15030 -12.12433 -11.90115 -11.64477 -11.36482 -11.36067 -11.18739 -10.91637 -10.54002 -10.44138 -10.31826 -10.25468 -8.17642 -6.29767 -0.27959 0.06207 1.40706 1.43243 1.54294 1.60172 2.01666 2.42712 2.63158 2.83109 3.05947 3.14819 3.56724 3.76719 3.92995 4.05886 4.10891 4.15487 4.31223 4.32840 4.54052 4.62667 4.68589 4.69224 4.72747 4.84172 4.88077 4.89445 5.09031 5.20593 5.21498 5.34397 5.40281 5.43003 5.58295 5.79671 5.89376 5.99575 6.26434 6.40978 6.88637 7.01105 7.16610 7.39580 8.94596 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041411 B = 0.002205 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.991086 B =12694.929516 C =12855.586840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.157 3.843 3 C -0.207 4.207 4 C 0.140 3.860 5 N -0.533 5.533 6 C 0.293 3.707 7 C 0.194 3.806 8 N -0.712 5.712 9 C 0.517 3.483 10 O -0.581 6.581 11 C -0.126 4.126 12 C -0.096 4.096 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.541 4.541 16 H 0.066 0.934 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.259 1.259 23 N -0.530 5.530 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.109 0.891 27 H 0.189 0.811 28 H 0.204 0.796 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.412 0.588 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.061 0.939 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.491 29.591 -9.359 35.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.011 3.989 3 C -0.229 4.229 4 C -0.024 4.024 5 N -0.248 5.248 6 C 0.024 3.976 7 C 0.069 3.931 8 N -0.365 5.365 9 C 0.306 3.694 10 O -0.461 6.461 11 C -0.165 4.165 12 C -0.134 4.134 13 C -0.133 4.133 14 C -0.019 4.019 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.795 3.205 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.183 1.183 23 N -0.247 5.247 24 H 0.114 0.886 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.207 0.793 28 H 0.220 0.780 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.248 0.752 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.003 0.997 39 H 0.004 0.996 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.675 28.102 -10.067 34.192 hybrid contribution -0.002 0.132 0.620 0.634 sum -16.677 28.234 -9.447 34.125 Atomic orbital electron populations 1.20918 0.85481 1.05166 1.04699 1.22460 0.99271 0.88053 0.89078 1.23252 0.96231 1.01584 1.01793 1.23948 0.93341 0.96114 0.88989 1.68265 1.42561 0.99613 1.14372 1.22742 0.86974 0.94059 0.93785 1.19731 0.99252 0.89248 0.84912 1.45728 1.59862 1.22895 1.08054 1.21204 0.75909 0.79826 0.92465 1.90705 1.52265 1.55119 1.47962 1.21667 1.04282 0.98608 0.91954 1.21257 0.99577 0.95695 0.96909 1.21447 0.99982 0.96871 0.95016 1.19066 0.94054 0.93301 0.95518 1.21753 1.36752 1.05698 0.93685 0.91592 1.26113 0.95445 0.96888 1.02114 1.70135 1.40458 1.13841 1.33380 0.85366 0.77626 0.78536 0.79010 1.19697 1.20947 1.18335 1.68116 1.09377 1.32479 1.14683 0.88562 0.90716 0.87221 0.79334 0.77976 0.89895 0.89744 0.75186 0.86303 0.86327 0.93671 0.93659 0.92074 0.92052 0.99656 0.99647 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.22 71.24 0.73 0.11 16 2 C 0.16 1.94 6.82 42.58 0.29 2.23 16 3 C -0.21 -1.56 9.86 22.44 0.22 -1.34 16 4 C 0.14 1.50 11.30 84.69 0.96 2.45 16 5 N -0.53 -9.90 10.34 -187.86 -1.94 -11.84 16 6 C 0.29 6.02 7.01 138.74 0.97 6.99 16 7 C 0.19 4.50 6.11 85.63 0.52 5.03 16 8 N -0.71 -16.06 5.55 -466.80 -2.59 -18.65 16 9 C 0.52 15.09 7.83 87.66 0.69 15.78 16 10 O -0.58 -22.57 15.98 -3.02 -0.05 -22.61 16 11 C -0.13 -3.29 5.70 29.85 0.17 -3.11 16 12 C -0.10 -3.58 4.50 30.59 0.14 -3.45 16 13 C -0.10 -4.00 5.15 30.59 0.16 -3.84 16 14 C 0.02 0.99 4.97 29.85 0.15 1.14 16 15 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 16 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 17 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 18 N -0.94 -59.75 13.29 21.45 0.28 -59.47 16 19 Si 0.97 45.39 29.54 68.60 2.03 47.41 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 23 N -0.53 -10.24 10.27 -176.01 -1.81 -12.05 16 24 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.11 0.03 8.10 -2.39 -0.02 0.01 16 27 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 28 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.41 7.21 8.46 -92.70 -0.78 6.43 16 32 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 35 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H -0.01 -0.91 8.14 -2.38 -0.02 -0.93 16 40 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -81.29 346.68 1.86 -79.43 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.24 Total: 7.43 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.69 Total: -9.65 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -6.05 Total: -102.01 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.61 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -81.29 1.86 -79.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911001130.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.687 kcal (2) G-P(sol) polarization free energy of solvation -81.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds