Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34128 * 125.99294 * 2 1 4 4 C 1.30487 * 109.25935 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.65172 * 179.97438 * 4 3 2 6 6 C 1.53047 * 109.45942 * 215.09096 * 5 4 3 7 7 C 1.53199 * 109.31075 * 178.61015 * 6 5 4 8 8 N 1.46928 * 108.77023 * 54.63740 * 7 6 5 9 9 C 1.34775 * 120.62757 * 126.41716 * 8 7 6 10 10 O 1.21687 * 120.00071 * 174.71649 * 9 8 7 11 11 C 1.46371 * 120.00139 * 354.71083 * 9 8 7 12 12 H 1.08003 * 120.00266 * 5.64547 * 11 9 8 13 13 C 1.40052 * 120.00050 * 185.64504 * 11 9 8 14 14 N 1.30665 * 120.00435 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99993 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47393 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47488 * 120.00069 * 15 13 11 18 18 H 1.48500 * 109.47107 * 240.00125 * 15 13 11 19 19 C 1.46922 * 118.74035 * 306.38596 * 8 7 6 20 20 C 1.53039 * 109.46132 * 95.02412 * 5 4 3 21 21 N 1.35045 * 108.70123 * 359.97438 * 4 3 2 22 22 H 0.97001 * 126.40124 * 180.02562 * 21 4 3 23 23 C 1.34672 * 125.98822 * 179.97438 * 2 1 3 24 24 C 1.50693 * 126.59231 * 0.26598 * 23 2 1 25 25 H 1.09003 * 109.46894 * 270.00021 * 1 2 3 26 26 H 1.08998 * 109.46893 * 29.99993 * 1 2 3 27 27 H 1.09002 * 109.47215 * 150.00081 * 1 2 3 28 28 H 1.08997 * 109.45798 * 335.04379 * 5 4 3 29 29 H 1.08993 * 109.49643 * 298.56430 * 6 5 4 30 30 H 1.09004 * 109.49462 * 58.66273 * 6 5 4 31 31 H 1.09000 * 109.58671 * 294.85119 * 7 6 5 32 32 H 1.09000 * 109.58507 * 174.42131 * 7 6 5 33 33 H 0.96996 * 120.00803 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.59101 * 293.82532 * 19 8 7 35 35 H 1.09002 * 109.58524 * 173.40481 * 19 8 7 36 36 H 1.08998 * 109.49791 * 301.33512 * 20 5 4 37 37 H 1.08992 * 109.50018 * 61.43717 * 20 5 4 38 38 H 1.09000 * 109.47243 * 269.71015 * 24 23 2 39 39 H 1.09003 * 109.47160 * 29.71100 * 24 23 2 40 40 H 1.09002 * 109.47406 * 149.70829 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0852 0.0000 4 6 3.5449 0.7095 0.0006 5 6 4.7386 1.6293 0.0002 6 6 5.8634 1.0046 -0.8287 7 6 7.0624 1.9579 -0.8556 8 7 7.4399 2.2817 0.5270 9 6 8.7063 2.1036 0.9526 10 8 9.0295 2.4647 2.0688 11 6 9.6928 1.4758 0.0722 12 1 9.4320 1.2383 -0.9486 13 6 10.9750 1.1830 0.5536 14 7 11.2908 1.4708 1.7884 15 14 12.2342 0.3824 -0.5702 16 1 11.6326 0.1612 -1.9097 17 1 13.4179 1.2699 -0.6991 18 1 12.6532 -0.9210 0.0050 19 6 6.4110 2.8041 1.4364 20 6 5.2193 1.8414 1.4376 21 7 3.5912 -0.6401 0.0015 22 1 4.3913 -1.1886 0.0024 23 6 2.2984 -1.0897 0.0005 24 6 1.8473 -2.5275 -0.0045 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 4.4576 2.5887 -0.4342 29 1 6.1620 0.0569 -0.3809 30 1 5.5127 0.8323 -1.8463 31 1 6.7908 2.8718 -1.3839 32 1 7.9003 1.4768 -1.3601 33 1 12.1790 1.2683 2.1217 34 1 6.0863 3.7871 1.0950 35 1 6.8192 2.8815 2.4441 36 1 4.4104 2.2647 2.0330 37 1 5.5241 0.8858 1.8640 38 1 1.7396 -2.8781 1.0220 39 1 0.8888 -2.6058 -0.5176 40 1 2.5871 -3.1387 -0.5215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924316968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = 2.232256 kcal Electronic energy + Delta-G solvation = -21561.550766 eV Core-core repulsion = 18376.321973 eV Total energy + Delta-G solvation = -3185.228793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16867 -38.59437 -36.01966 -33.31855 -32.92588 -32.56133 -31.40374 -30.58755 -28.58640 -26.77347 -25.70338 -23.57813 -22.68013 -21.41393 -20.21576 -19.67148 -18.75953 -17.25843 -16.55438 -15.72806 -15.47207 -14.69771 -14.47201 -14.18313 -13.95579 -13.61700 -13.57106 -13.28689 -13.04546 -12.80448 -12.75209 -12.50821 -12.37644 -12.14896 -11.82267 -11.61114 -11.23734 -11.09849 -10.84962 -10.79220 -10.65710 -10.27318 -10.20848 -9.89492 -9.86509 -9.73849 -8.91089 -8.02872 -7.61716 -7.27483 -6.24431 -4.69456 2.03384 3.08398 3.10834 3.13758 3.17018 3.20553 4.03842 4.30519 4.51306 4.55516 4.82936 4.92974 5.01864 5.13112 5.16021 5.25779 5.31642 5.51607 5.58806 5.61793 5.67427 5.71044 5.77937 5.83282 5.90387 5.99694 6.05975 6.21642 6.22843 6.31574 6.40808 6.43307 6.55464 6.71475 6.82345 7.40994 7.43477 7.58031 8.09216 8.18183 8.30844 8.97643 9.39155 10.53141 10.71732 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.003978 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.366755 B = 7036.195892 C = 7525.533103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.002 4.002 3 N -0.491 5.491 4 C 0.233 3.767 5 C -0.001 4.001 6 C -0.131 4.131 7 C 0.124 3.876 8 N -0.643 5.643 9 C 0.559 3.441 10 O -0.577 6.577 11 C -0.545 4.545 12 H 0.074 0.926 13 C 0.087 3.913 14 N -0.768 5.768 15 Si 0.905 3.095 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.277 1.277 19 C 0.122 3.878 20 C -0.120 4.120 21 N -0.561 5.561 22 H 0.418 0.582 23 C -0.038 4.038 24 C -0.074 4.074 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.268 0.732 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.139 -6.814 -6.034 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.132 4.132 3 N -0.210 5.210 4 C -0.031 4.031 5 C -0.021 4.021 6 C -0.171 4.171 7 C 0.000 4.000 8 N -0.381 5.381 9 C 0.365 3.635 10 O -0.460 6.460 11 C -0.582 4.582 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.396 5.396 15 Si 0.730 3.270 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.202 1.202 19 C -0.003 4.003 20 C -0.159 4.159 21 N -0.164 5.164 22 H 0.256 0.744 23 C -0.153 4.153 24 C -0.132 4.132 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.138 -5.787 -5.255 17.932 hybrid contribution 1.221 -1.596 -0.597 2.096 sum -14.917 -7.383 -5.852 17.643 Atomic orbital electron populations 1.19993 0.88013 1.02262 1.01891 1.20494 0.96272 0.88135 1.08261 1.70138 0.99780 1.30307 1.20796 1.23285 0.94890 0.81493 1.03442 1.19704 0.87976 0.96448 0.97979 1.22058 0.95798 1.00063 0.99147 1.21390 0.96355 0.96689 0.85610 1.48212 1.09757 1.70126 1.10054 1.18258 0.79484 0.78527 0.87225 1.90595 1.78154 1.54699 1.22521 1.21009 0.96312 1.42344 0.98514 0.90854 1.25731 0.98658 0.93973 0.94869 1.70015 1.19620 1.35407 1.14583 0.86353 0.80626 0.79134 0.80882 1.18751 1.20094 1.20214 1.21126 0.87728 0.94447 0.96956 1.21963 0.98467 1.01150 0.94364 1.43121 1.08046 1.08244 1.56963 0.74381 1.20952 0.83912 0.97194 1.13276 1.20180 1.01671 0.88816 1.02523 0.91683 0.91369 0.91670 0.88244 0.91922 0.91528 0.93580 0.88467 0.92113 0.93635 0.89528 0.91322 0.92067 0.91134 0.90174 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.22 36.01 0.37 -0.27 16 2 C 0.00 -0.03 7.09 -82.85 -0.59 -0.62 16 3 N -0.49 -7.84 11.25 -7.07 -0.08 -7.92 16 4 C 0.23 3.44 6.87 -155.42 -1.07 2.37 16 5 C 0.00 -0.01 2.62 -91.73 -0.24 -0.25 16 6 C -0.13 -1.90 5.08 -26.60 -0.14 -2.03 16 7 C 0.12 2.18 6.35 -3.71 -0.02 2.16 16 8 N -0.64 -14.12 2.97 -174.43 -0.52 -14.63 16 9 C 0.56 15.55 7.61 -12.99 -0.10 15.45 16 10 O -0.58 -18.44 14.48 5.20 0.08 -18.36 16 11 C -0.55 -14.82 8.88 -35.63 -0.32 -15.14 16 12 H 0.07 1.80 5.64 -52.48 -0.30 1.51 16 13 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 14 N -0.77 -22.62 11.84 55.55 0.66 -21.96 16 15 Si 0.91 19.57 29.56 -169.99 -5.02 14.54 16 16 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 19 C 0.12 2.35 6.42 -3.71 -0.02 2.32 16 20 C -0.12 -1.93 5.34 -26.61 -0.14 -2.08 16 21 N -0.56 -7.09 5.91 -6.54 -0.04 -7.13 16 22 H 0.42 4.51 8.20 -40.82 -0.33 4.18 16 23 C -0.04 -0.46 7.24 -81.60 -0.59 -1.05 16 24 C -0.07 -0.59 10.23 36.00 0.37 -0.22 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.50 7.16 -51.93 -0.37 0.12 16 28 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.06 0.92 7.49 -51.93 -0.39 0.53 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.80 5.30 -51.93 -0.28 1.52 16 33 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.89 7.04 -51.93 -0.37 1.52 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.52 7.17 -51.93 -0.37 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 324.50 15.07 4.89 4.89 Total: -1.00 -34.97 324.50 -8.39 -43.36 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.77 Total: 4.29 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.59 Total: 2.93 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.02 Total: -51.65 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.08 Total: -18.36 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.97 -8.39 -43.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924316968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.592 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds