Wall clock time and date at job start Mon Mar 30 2020 02:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34128 * 125.99294 * 2 1 4 4 C 1.30487 * 109.25935 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.65172 * 179.97438 * 4 3 2 6 6 C 1.53047 * 109.45942 * 215.09096 * 5 4 3 7 7 C 1.53199 * 109.31075 * 178.61015 * 6 5 4 8 8 N 1.46928 * 108.77023 * 54.63740 * 7 6 5 9 9 C 1.34775 * 120.62757 * 126.41716 * 8 7 6 10 10 O 1.21687 * 120.00071 * 174.71649 * 9 8 7 11 11 C 1.46371 * 120.00139 * 354.71083 * 9 8 7 12 12 H 1.08003 * 120.00266 * 5.64547 * 11 9 8 13 13 C 1.40052 * 120.00050 * 185.64504 * 11 9 8 14 14 N 1.30665 * 120.00435 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99993 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47393 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47488 * 120.00069 * 15 13 11 18 18 H 1.48500 * 109.47107 * 240.00125 * 15 13 11 19 19 C 1.46922 * 118.74035 * 306.38596 * 8 7 6 20 20 C 1.53039 * 109.46132 * 95.02412 * 5 4 3 21 21 N 1.35045 * 108.70123 * 359.97438 * 4 3 2 22 22 H 0.97001 * 126.40124 * 180.02562 * 21 4 3 23 23 C 1.34672 * 125.98822 * 179.97438 * 2 1 3 24 24 C 1.50693 * 126.59231 * 0.26598 * 23 2 1 25 25 H 1.09003 * 109.46894 * 270.00021 * 1 2 3 26 26 H 1.08998 * 109.46893 * 29.99993 * 1 2 3 27 27 H 1.09002 * 109.47215 * 150.00081 * 1 2 3 28 28 H 1.08997 * 109.45798 * 335.04379 * 5 4 3 29 29 H 1.08993 * 109.49643 * 298.56430 * 6 5 4 30 30 H 1.09004 * 109.49462 * 58.66273 * 6 5 4 31 31 H 1.09000 * 109.58671 * 294.85119 * 7 6 5 32 32 H 1.09000 * 109.58507 * 174.42131 * 7 6 5 33 33 H 0.96996 * 120.00803 * 180.02562 * 14 13 11 34 34 H 1.09005 * 109.59101 * 293.82532 * 19 8 7 35 35 H 1.09002 * 109.58524 * 173.40481 * 19 8 7 36 36 H 1.08998 * 109.49791 * 301.33512 * 20 5 4 37 37 H 1.08992 * 109.50018 * 61.43717 * 20 5 4 38 38 H 1.09000 * 109.47243 * 269.71015 * 24 23 2 39 39 H 1.09003 * 109.47160 * 29.71100 * 24 23 2 40 40 H 1.09002 * 109.47406 * 149.70829 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2953 1.0852 0.0000 4 6 3.5449 0.7095 0.0006 5 6 4.7386 1.6293 0.0002 6 6 5.8634 1.0046 -0.8287 7 6 7.0624 1.9579 -0.8556 8 7 7.4399 2.2817 0.5270 9 6 8.7063 2.1036 0.9526 10 8 9.0295 2.4647 2.0688 11 6 9.6928 1.4758 0.0722 12 1 9.4320 1.2383 -0.9486 13 6 10.9750 1.1830 0.5536 14 7 11.2908 1.4708 1.7884 15 14 12.2342 0.3824 -0.5702 16 1 11.6326 0.1612 -1.9097 17 1 13.4179 1.2699 -0.6991 18 1 12.6532 -0.9210 0.0050 19 6 6.4110 2.8041 1.4364 20 6 5.2193 1.8414 1.4376 21 7 3.5912 -0.6401 0.0015 22 1 4.3913 -1.1886 0.0024 23 6 2.2984 -1.0897 0.0005 24 6 1.8473 -2.5275 -0.0045 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 4.4576 2.5887 -0.4342 29 1 6.1620 0.0569 -0.3809 30 1 5.5127 0.8323 -1.8463 31 1 6.7908 2.8718 -1.3839 32 1 7.9003 1.4768 -1.3601 33 1 12.1790 1.2683 2.1217 34 1 6.0863 3.7871 1.0950 35 1 6.8192 2.8815 2.4441 36 1 4.4104 2.2647 2.0330 37 1 5.5241 0.8858 1.8640 38 1 1.7396 -2.8781 1.0220 39 1 0.8888 -2.6058 -0.5176 40 1 2.5871 -3.1387 -0.5215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924316968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:56 Heat of formation + Delta-G solvation = -21.349901 kcal Electronic energy + Delta-G solvation = -21562.573365 eV Core-core repulsion = 18376.321973 eV Total energy + Delta-G solvation = -3186.251392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.17152 -40.26273 -37.82601 -34.76928 -34.44908 -33.93830 -32.67252 -32.02645 -29.36256 -28.63117 -27.10994 -24.76448 -24.13204 -22.77019 -21.56365 -20.82786 -20.22223 -18.56364 -18.18261 -17.61841 -16.49023 -16.26027 -15.99927 -15.62087 -15.54330 -14.90144 -14.74914 -14.39312 -14.18872 -13.91600 -13.70978 -13.68172 -13.39575 -13.31000 -13.24211 -12.95777 -12.84071 -12.77560 -12.51356 -12.26163 -12.16505 -11.94291 -11.60862 -11.47187 -10.94582 -10.91143 -10.78554 -9.76975 -9.10955 -8.97747 -8.28469 -6.82684 1.06173 1.40052 1.41214 1.58280 2.06927 2.19398 2.23760 2.47091 2.83234 3.25959 3.63420 3.71997 3.89206 4.05109 4.14312 4.19233 4.24814 4.37362 4.43023 4.50330 4.55625 4.73657 4.78220 4.87332 4.91033 4.92806 4.93512 4.94639 5.04043 5.07867 5.12300 5.18390 5.35828 5.36703 5.41743 5.77905 5.90471 6.16047 6.40626 6.48841 6.89257 7.16579 7.43733 8.48090 8.68513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.003978 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.366755 B = 7036.195892 C = 7525.533103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.033 4.033 3 N -0.520 5.520 4 C 0.214 3.786 5 C 0.010 3.990 6 C -0.118 4.118 7 C 0.119 3.881 8 N -0.644 5.644 9 C 0.540 3.460 10 O -0.634 6.634 11 C -0.566 4.566 12 H 0.098 0.902 13 C 0.028 3.972 14 N -0.825 5.825 15 Si 0.995 3.005 16 H -0.242 1.242 17 H -0.272 1.272 18 H -0.270 1.270 19 C 0.121 3.879 20 C -0.105 4.105 21 N -0.557 5.557 22 H 0.426 0.574 23 C -0.029 4.029 24 C -0.073 4.073 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.273 0.727 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.384 -8.787 -8.530 21.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.162 4.162 3 N -0.241 5.241 4 C -0.050 4.050 5 C -0.010 4.010 6 C -0.157 4.157 7 C -0.004 4.004 8 N -0.380 5.380 9 C 0.347 3.653 10 O -0.522 6.522 11 C -0.603 4.603 12 H 0.115 0.885 13 C -0.187 4.187 14 N -0.454 5.454 15 Si 0.814 3.186 16 H -0.165 1.165 17 H -0.197 1.197 18 H -0.195 1.195 19 C -0.003 4.003 20 C -0.144 4.144 21 N -0.161 5.161 22 H 0.265 0.735 23 C -0.145 4.145 24 C -0.131 4.131 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.445 -7.765 -7.797 20.626 hybrid contribution 1.488 -0.955 0.204 1.780 sum -15.957 -8.720 -7.594 19.706 Atomic orbital electron populations 1.20072 0.85986 1.03259 1.02545 1.21120 0.97851 0.88033 1.09167 1.70079 1.00590 1.31987 1.21397 1.23040 0.94478 0.82263 1.05208 1.19510 0.88207 0.96916 0.96366 1.21929 0.94184 0.98813 1.00759 1.21610 0.97400 0.98378 0.82997 1.48066 1.08642 1.69220 1.12113 1.18696 0.81501 0.78396 0.86742 1.90544 1.79879 1.57020 1.24753 1.21541 0.96864 1.42259 0.99598 0.88455 1.26999 1.01154 0.94066 0.96473 1.70199 1.20621 1.37226 1.17398 0.85015 0.76890 0.77737 0.78949 1.16490 1.19737 1.19525 1.21196 0.88018 0.96288 0.94780 1.21773 0.97074 0.99453 0.96113 1.43160 1.08845 1.07736 1.56381 0.73471 1.21611 0.83227 0.98793 1.10829 1.20343 1.02872 0.86231 1.03625 0.91147 0.91995 0.89071 0.87925 0.92204 0.88700 0.91574 0.89240 0.91724 0.91823 0.93030 0.90397 0.93417 0.90142 0.88274 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.22 71.24 0.73 -0.36 16 2 C -0.03 -0.84 7.09 41.39 0.29 -0.55 16 3 N -0.52 -15.94 11.25 -176.29 -1.98 -17.93 16 4 C 0.21 5.98 6.87 138.13 0.95 6.93 16 5 C 0.01 0.29 2.62 -11.51 -0.03 0.26 16 6 C -0.12 -3.16 5.08 30.68 0.16 -3.01 16 7 C 0.12 4.04 6.35 86.36 0.55 4.58 16 8 N -0.64 -28.68 2.97 -823.98 -2.45 -31.13 16 9 C 0.54 31.09 7.61 86.36 0.66 31.74 16 10 O -0.63 -42.77 14.48 -4.31 -0.06 -42.83 16 11 C -0.57 -31.09 8.88 24.83 0.22 -30.87 16 12 H 0.10 4.69 5.64 -2.91 -0.02 4.67 16 13 C 0.03 1.52 5.50 85.31 0.47 1.99 16 14 N -0.82 -50.26 11.84 21.84 0.26 -50.00 16 15 Si 0.99 39.90 29.56 68.60 2.03 41.93 16 16 H -0.24 -8.77 7.11 99.48 0.71 -8.07 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 19 C 0.12 4.79 6.42 86.36 0.55 5.34 16 20 C -0.10 -3.37 5.34 30.67 0.16 -3.21 16 21 N -0.56 -12.97 5.91 -174.61 -1.03 -14.00 16 22 H 0.43 8.31 8.20 -92.71 -0.76 7.55 16 23 C -0.03 -0.62 7.24 40.95 0.30 -0.32 16 24 C -0.07 -0.91 10.23 71.23 0.73 -0.18 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 1.09 7.16 -2.39 -0.02 1.07 16 28 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.06 1.65 7.49 -2.39 -0.02 1.64 16 30 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.09 3.17 5.30 -2.39 -0.01 3.16 16 33 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 34 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.05 2.39 7.04 -2.39 -0.02 2.38 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.88 7.17 -2.39 -0.02 0.86 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -79.63 324.50 2.79 -76.83 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.30 Total: 24.78 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.73 Total: 12.36 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -5.21 Total: -113.06 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.06 Total: -42.83 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -79.63 2.79 -76.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924316968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.483 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds