Wall clock time and date at job start Mon Mar 30 2020 01:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38620 * 120.07619 * 2 1 4 4 C 1.38876 * 117.96369 * 180.23771 * 3 2 1 5 5 C 1.50707 * 121.01290 * 179.73956 * 4 3 2 6 6 N 1.46900 * 109.46999 * 259.72565 * 5 4 3 7 7 C 1.48720 * 111.01831 * 74.48981 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42910 * 110.32027 * 241.04997 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46901 * 60.00150 * 15 13 11 17 17 H 1.48501 * 109.47188 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47596 * 299.99981 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99963 * 6 5 4 20 20 C 1.38614 * 117.97256 * 359.47376 * 4 3 2 21 21 C 1.50702 * 120.07618 * 180.29209 * 20 4 3 22 22 N 1.31927 * 119.84515 * 0.27116 * 20 4 3 23 23 N 1.28350 * 122.18459 * 359.97438 * 22 20 4 24 24 H 1.09001 * 109.47087 * 270.30148 * 1 2 3 25 25 H 1.08997 * 109.46746 * 30.30197 * 1 2 3 26 26 H 1.09000 * 109.47133 * 150.30326 * 1 2 3 27 27 H 1.07997 * 121.01432 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47211 * 139.71976 * 5 4 3 29 29 H 1.08999 * 109.46541 * 19.72166 * 5 4 3 30 30 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 31 31 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 32 32 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 33 33 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 34 34 H 0.96699 * 114.00154 * 298.54485 * 10 9 8 35 35 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 36 36 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 37 37 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 38 38 H 1.09001 * 109.46925 * 89.99637 * 21 20 4 39 39 H 1.08995 * 109.46936 * 209.99806 * 21 20 4 40 40 H 1.09002 * 109.47194 * 330.00153 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1996 0.0000 4 6 3.5895 1.1484 -0.0051 5 6 4.4131 2.4105 -0.0113 6 7 4.8824 2.6822 -1.3765 7 6 3.7764 3.1941 -2.2288 8 6 4.4875 3.9217 -3.3900 9 6 5.8760 4.3029 -2.8367 10 8 6.0430 5.7222 -2.8500 11 6 6.9616 3.6395 -3.6443 12 1 7.6381 2.9435 -3.1708 13 6 7.0912 3.9212 -4.9878 14 7 6.2677 4.7692 -5.5643 15 14 8.4373 3.0993 -5.9888 16 1 8.2556 1.6260 -5.9470 17 1 8.3631 3.5669 -7.3963 18 1 9.7627 3.4510 -5.4190 19 6 5.8885 3.7753 -1.3859 20 6 4.1942 -0.0989 0.0014 21 6 5.6971 -0.2097 0.0029 22 7 3.4508 -1.1888 0.0066 23 7 2.1682 -1.1416 0.0065 24 1 -0.3633 0.0054 1.0277 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5091 27 1 1.6796 2.1449 -0.0004 28 1 5.2707 2.2880 0.6502 29 1 3.8027 3.2442 0.3357 30 1 3.1554 3.8916 -1.6667 31 1 3.1742 2.3691 -2.6092 32 1 3.9333 4.8170 -3.6718 33 1 4.5912 3.2561 -4.2469 34 1 5.9987 6.1152 -3.7325 35 1 6.3587 4.9671 -6.5095 36 1 6.8745 3.3866 -1.1312 37 1 5.5991 4.5643 -0.6918 38 1 6.0587 -0.2313 1.0310 39 1 5.9943 -1.1264 -0.5062 40 1 6.1252 0.6487 -0.5148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:13 Heat of formation + Delta-G solvation = 5.126537 kcal Electronic energy + Delta-G solvation = -21982.393972 eV Core-core repulsion = 18797.290685 eV Total energy + Delta-G solvation = -3185.103287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09425 -38.50107 -35.58376 -34.37129 -33.46013 -32.13516 -30.25236 -29.49811 -28.00223 -26.76226 -25.94106 -24.26645 -23.04586 -21.57562 -20.31716 -19.51824 -17.57042 -17.06508 -15.84045 -15.68119 -15.24658 -15.00429 -14.81464 -14.34221 -13.89489 -13.68538 -13.44069 -13.06754 -13.01522 -12.67869 -12.37654 -12.36019 -12.12964 -12.02362 -11.83623 -11.37523 -11.18183 -11.02538 -10.69975 -10.62321 -10.52803 -10.40332 -10.01229 -9.86248 -9.52132 -9.29108 -9.11208 -8.59325 -8.19242 -8.02658 -6.19630 -4.25459 0.86620 0.99644 3.26727 3.31056 3.34698 3.55027 4.05236 4.29181 4.33774 4.53284 4.61912 4.67536 4.85668 5.08725 5.11888 5.27028 5.37277 5.43784 5.51779 5.61789 5.68933 5.71962 5.79854 5.83208 5.89264 6.04406 6.07757 6.14916 6.23541 6.29685 6.39434 6.46211 6.77477 6.94228 7.11405 7.40317 7.54843 7.57793 7.81477 8.16368 8.76577 8.84720 9.37800 9.47121 10.87911 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.004816 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.925110 B = 5812.267012 C = 6150.154224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.058 3.942 3 C -0.117 4.117 4 C -0.059 4.059 5 C 0.080 3.920 6 N -0.493 5.493 7 C 0.033 3.967 8 C -0.120 4.120 9 C 0.251 3.749 10 O -0.595 6.595 11 C -0.520 4.520 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.900 5.900 15 Si 0.899 3.101 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.053 3.947 20 C 0.089 3.911 21 C -0.106 4.106 22 N -0.248 5.248 23 N -0.251 5.251 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.383 0.617 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.887 -4.204 10.334 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.071 4.071 5 C -0.049 4.049 6 N -0.218 5.218 7 C -0.095 4.095 8 C -0.159 4.159 9 C 0.211 3.789 10 O -0.404 6.404 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.726 3.274 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.074 4.074 20 C -0.056 4.056 21 C -0.164 4.164 22 N -0.089 5.089 23 N -0.093 5.093 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.233 0.767 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.702 -6.380 10.610 14.581 hybrid contribution 0.183 1.969 -0.987 2.210 sum -7.520 -4.411 9.623 12.985 Atomic orbital electron populations 1.20625 0.87812 1.03883 1.03208 1.22777 0.98811 0.90465 0.96664 1.22181 0.94093 0.99704 0.98625 1.20961 0.94048 0.96680 0.95384 1.21198 0.97906 0.92302 0.93522 1.65373 1.10363 1.39555 1.06491 1.23216 0.93203 0.97234 0.95809 1.22862 0.97404 0.99074 0.96578 1.19219 0.91629 0.79111 0.88944 1.86081 1.96024 1.22670 1.35607 1.21584 1.15003 1.25411 0.93869 0.91958 1.24996 0.95952 0.94824 0.97673 1.69682 1.37247 1.34865 1.12287 0.86542 0.82167 0.79871 0.78776 1.20105 1.21300 1.20128 1.23026 0.95164 0.90682 0.98544 1.22761 0.99185 0.89493 0.94189 1.20783 0.87396 1.05330 1.02915 1.72906 0.99243 1.26949 1.09813 1.72853 1.01727 1.24835 1.09874 0.90228 0.90445 0.90131 0.83840 0.89149 0.93416 0.95155 0.91911 0.92985 0.90579 0.76651 0.92381 0.90133 0.94807 0.90542 0.90239 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.20 36.01 0.37 -0.51 16 2 C 0.06 0.76 6.87 -82.41 -0.57 0.19 16 3 C -0.12 -1.49 9.53 -39.20 -0.37 -1.87 16 4 C -0.06 -0.84 5.10 -104.24 -0.53 -1.37 16 5 C 0.08 1.12 4.15 -4.97 -0.02 1.10 16 6 N -0.49 -8.80 4.76 -231.26 -1.10 -9.90 16 7 C 0.03 0.61 6.11 -2.09 -0.01 0.60 16 8 C -0.12 -2.70 5.55 -25.35 -0.14 -2.84 16 9 C 0.25 5.97 1.05 -90.39 -0.10 5.88 16 10 O -0.59 -14.92 12.94 -35.23 -0.46 -15.38 16 11 C -0.52 -13.60 8.10 -34.44 -0.28 -13.88 16 12 H 0.06 1.63 7.53 -52.49 -0.40 1.23 16 13 C 0.07 1.75 5.02 -17.82 -0.09 1.66 16 14 N -0.90 -23.74 10.82 55.43 0.60 -23.14 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.05 1.06 5.74 -2.18 -0.01 1.05 16 20 C 0.09 1.35 6.87 -82.41 -0.57 0.78 16 21 C -0.11 -1.39 9.51 36.01 0.34 -1.05 16 22 N -0.25 -4.15 11.43 33.60 0.38 -3.77 16 23 N -0.25 -4.01 11.43 33.60 0.38 -3.63 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.08 0.57 8.09 -51.93 -0.42 0.15 16 26 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.09 1.15 7.33 -51.93 -0.38 0.76 16 29 H 0.05 0.62 7.68 -51.93 -0.40 0.23 16 30 H 0.03 0.51 7.75 -51.93 -0.40 0.11 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.17 7.98 -51.93 -0.41 0.76 16 33 H 0.08 1.90 7.23 -51.93 -0.38 1.53 16 34 H 0.38 9.79 7.33 45.56 0.33 10.12 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.08 1.60 7.67 -51.93 -0.40 1.20 16 37 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.10 1.41 6.51 -51.93 -0.34 1.08 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -28.91 326.14 -7.55 -36.45 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.27 Total: 9.07 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -1.98 Total: -10.25 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.27 Total: -40.43 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.46 Total: -15.38 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.91 -7.55 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.578 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds