Wall clock time and date at job start Mon Mar 30 2020 01:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38620 * 120.07619 * 2 1 4 4 C 1.38876 * 117.96369 * 180.23771 * 3 2 1 5 5 C 1.50707 * 121.01290 * 179.73956 * 4 3 2 6 6 N 1.46900 * 109.46999 * 259.72565 * 5 4 3 7 7 C 1.48720 * 111.01831 * 74.48981 * 6 5 4 8 8 C 1.54381 * 104.51692 * 158.96284 * 7 6 5 9 9 C 1.54257 * 105.14978 * 336.27274 * 8 7 6 10 10 O 1.42910 * 110.32027 * 241.04997 * 9 8 7 11 11 C 1.50697 * 110.32628 * 118.84329 * 9 8 7 12 12 H 1.07995 * 120.00073 * 241.44522 * 11 9 8 13 13 C 1.37883 * 119.99811 * 61.45328 * 11 9 8 14 14 N 1.31514 * 119.99933 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99722 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46901 * 60.00150 * 15 13 11 17 17 H 1.48501 * 109.47188 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47596 * 299.99981 * 15 13 11 19 19 C 1.48567 * 110.99718 * 189.99963 * 6 5 4 20 20 C 1.38614 * 117.97256 * 359.47376 * 4 3 2 21 21 C 1.50702 * 120.07618 * 180.29209 * 20 4 3 22 22 N 1.31927 * 119.84515 * 0.27116 * 20 4 3 23 23 N 1.28350 * 122.18459 * 359.97438 * 22 20 4 24 24 H 1.09001 * 109.47087 * 270.30148 * 1 2 3 25 25 H 1.08997 * 109.46746 * 30.30197 * 1 2 3 26 26 H 1.09000 * 109.47133 * 150.30326 * 1 2 3 27 27 H 1.07997 * 121.01432 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.47211 * 139.71976 * 5 4 3 29 29 H 1.08999 * 109.46541 * 19.72166 * 5 4 3 30 30 H 1.09004 * 110.38960 * 40.24251 * 7 6 5 31 31 H 1.08996 * 110.50963 * 277.74694 * 7 6 5 32 32 H 1.09002 * 110.32526 * 217.32092 * 8 7 6 33 33 H 1.08998 * 110.32190 * 95.21733 * 8 7 6 34 34 H 0.96699 * 114.00154 * 298.54485 * 10 9 8 35 35 H 0.97002 * 119.99478 * 180.02562 * 14 13 11 36 36 H 1.08999 * 110.41133 * 82.17552 * 19 6 5 37 37 H 1.09001 * 110.41003 * 319.73948 * 19 6 5 38 38 H 1.09001 * 109.46925 * 89.99637 * 21 20 4 39 39 H 1.08995 * 109.46936 * 209.99806 * 21 20 4 40 40 H 1.09002 * 109.47194 * 330.00153 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1996 0.0000 4 6 3.5895 1.1484 -0.0051 5 6 4.4131 2.4105 -0.0113 6 7 4.8824 2.6822 -1.3765 7 6 3.7764 3.1941 -2.2288 8 6 4.4875 3.9217 -3.3900 9 6 5.8760 4.3029 -2.8367 10 8 6.0430 5.7222 -2.8500 11 6 6.9616 3.6395 -3.6443 12 1 7.6381 2.9435 -3.1708 13 6 7.0912 3.9212 -4.9878 14 7 6.2677 4.7692 -5.5643 15 14 8.4373 3.0993 -5.9888 16 1 8.2556 1.6260 -5.9470 17 1 8.3631 3.5669 -7.3963 18 1 9.7627 3.4510 -5.4190 19 6 5.8885 3.7753 -1.3859 20 6 4.1942 -0.0989 0.0014 21 6 5.6971 -0.2097 0.0029 22 7 3.4508 -1.1888 0.0066 23 7 2.1682 -1.1416 0.0065 24 1 -0.3633 0.0054 1.0277 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3633 -0.8927 -0.5091 27 1 1.6796 2.1449 -0.0004 28 1 5.2707 2.2880 0.6502 29 1 3.8027 3.2442 0.3357 30 1 3.1554 3.8916 -1.6667 31 1 3.1742 2.3691 -2.6092 32 1 3.9333 4.8170 -3.6718 33 1 4.5912 3.2561 -4.2469 34 1 5.9987 6.1152 -3.7325 35 1 6.3587 4.9671 -6.5095 36 1 6.8745 3.3866 -1.1312 37 1 5.5991 4.5643 -0.6918 38 1 6.0587 -0.2313 1.0310 39 1 5.9943 -1.1264 -0.5062 40 1 6.1252 0.6487 -0.5148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:12 Heat of formation + Delta-G solvation = -15.617482 kcal Electronic energy + Delta-G solvation = -21983.293500 eV Core-core repulsion = 18797.290685 eV Total energy + Delta-G solvation = -3186.002815 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.16642 -40.06479 -37.12990 -35.45643 -34.73909 -34.13413 -31.55254 -30.65929 -29.66688 -27.88024 -27.27493 -25.91538 -24.13671 -22.81427 -21.66129 -21.29808 -19.02308 -18.64257 -17.14988 -16.87793 -16.78244 -16.44072 -16.22510 -15.68363 -15.57246 -14.99703 -14.47103 -14.27163 -14.11230 -14.05139 -13.73857 -13.54689 -13.34083 -13.23703 -13.04044 -13.00168 -12.89461 -12.66248 -12.38595 -12.27273 -12.12020 -11.89358 -11.71086 -10.96732 -10.92251 -10.62603 -10.55586 -10.34362 -10.11040 -9.39359 -8.18099 -6.29733 -0.20273 -0.02317 1.42464 1.43581 1.50283 2.41378 2.46334 2.99738 3.07431 3.16686 3.49137 3.50571 3.67425 3.86048 3.95526 4.17359 4.21324 4.31200 4.33765 4.47067 4.53897 4.58404 4.67773 4.73157 4.75991 4.76362 4.81749 4.94458 4.98820 5.06506 5.22461 5.23380 5.29400 5.37338 5.44959 5.67073 5.78771 5.92254 6.11248 6.23966 6.75296 7.38204 7.46083 7.76894 8.87424 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022378 B = 0.004816 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.925110 B = 5812.267012 C = 6150.154224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.055 3.945 3 C -0.111 4.111 4 C -0.070 4.070 5 C 0.084 3.916 6 N -0.502 5.502 7 C 0.045 3.955 8 C -0.114 4.114 9 C 0.233 3.767 10 O -0.601 6.601 11 C -0.540 4.540 12 H 0.054 0.946 13 C 0.027 3.973 14 N -0.916 5.916 15 Si 0.952 3.048 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.064 3.936 20 C 0.076 3.924 21 C -0.102 4.102 22 N -0.280 5.280 23 N -0.282 5.282 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.175 0.825 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.376 0.624 35 H 0.266 0.734 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.881 -3.980 11.559 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 C -0.140 4.140 4 C -0.081 4.081 5 C -0.044 4.044 6 N -0.227 5.227 7 C -0.082 4.082 8 C -0.153 4.153 9 C 0.193 3.807 10 O -0.409 6.409 11 C -0.578 4.578 12 H 0.073 0.927 13 C -0.173 4.173 14 N -0.556 5.556 15 Si 0.778 3.222 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.063 4.063 20 C -0.070 4.070 21 C -0.160 4.160 22 N -0.121 5.121 23 N -0.123 5.123 24 H 0.117 0.883 25 H 0.118 0.882 26 H 0.097 0.903 27 H 0.193 0.807 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.226 0.774 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.699 -6.174 11.850 15.945 hybrid contribution 0.443 1.904 -1.358 2.381 sum -8.256 -4.270 10.492 14.017 Atomic orbital electron populations 1.20773 0.84925 1.04899 1.04733 1.23402 1.00687 0.89862 0.95072 1.22565 0.93630 1.00867 0.96899 1.21017 0.94839 0.96156 0.96086 1.21238 0.98930 0.92825 0.91414 1.65281 1.09969 1.38464 1.08959 1.23066 0.93166 0.97365 0.94653 1.22634 0.97330 0.98318 0.96994 1.19496 0.91608 0.78258 0.91339 1.86075 1.96146 1.23570 1.35102 1.21871 1.15739 1.25632 0.94572 0.92744 1.25613 0.97669 0.95404 0.98575 1.69762 1.38084 1.35456 1.12324 0.85713 0.80092 0.78781 0.77619 1.20292 1.20938 1.19790 1.22819 0.96004 0.91421 0.96100 1.23035 0.99850 0.89828 0.94256 1.20771 0.86561 1.04511 1.04153 1.72832 0.99941 1.28048 1.11288 1.72772 1.01702 1.26643 1.11228 0.88305 0.88189 0.90337 0.80747 0.87672 0.91327 0.92687 0.91567 0.93893 0.94028 0.77411 0.92452 0.90362 0.93724 0.88284 0.90736 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.20 71.24 0.73 -0.70 16 2 C 0.06 1.33 6.87 42.64 0.29 1.62 16 3 C -0.11 -2.47 9.53 22.51 0.21 -2.25 16 4 C -0.07 -1.81 5.10 -19.62 -0.10 -1.91 16 5 C 0.08 2.11 4.15 85.56 0.35 2.46 16 6 N -0.50 -16.90 4.76 -885.58 -4.21 -21.11 16 7 C 0.05 1.57 6.11 86.42 0.53 2.10 16 8 C -0.11 -5.09 5.55 31.49 0.17 -4.92 16 9 C 0.23 11.03 1.05 -10.65 -0.01 11.02 16 10 O -0.60 -30.13 12.94 -148.98 -1.93 -32.06 16 11 C -0.54 -28.42 8.10 25.60 0.21 -28.21 16 12 H 0.05 2.87 7.53 -2.91 -0.02 2.85 16 13 C 0.03 1.42 5.02 84.66 0.43 1.84 16 14 N -0.92 -48.83 10.82 21.45 0.23 -48.59 16 15 Si 0.95 42.54 29.54 68.60 2.03 44.57 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 C 0.06 2.47 5.74 86.45 0.50 2.97 16 20 C 0.08 2.23 6.87 42.63 0.29 2.52 16 21 C -0.10 -2.58 9.51 71.24 0.68 -1.91 16 22 N -0.28 -9.28 11.43 -47.62 -0.54 -9.83 16 23 N -0.28 -8.78 11.43 -47.62 -0.54 -9.33 16 24 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.10 1.06 8.09 -2.39 -0.02 1.04 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 28 H 0.11 2.34 7.33 -2.39 -0.02 2.33 16 29 H 0.07 1.48 7.68 -2.39 -0.02 1.46 16 30 H 0.05 1.66 7.75 -2.38 -0.02 1.64 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.04 1.94 7.98 -2.39 -0.02 1.92 16 33 H 0.04 2.11 7.23 -2.39 -0.02 2.09 16 34 H 0.38 19.53 7.33 -74.06 -0.54 18.98 16 35 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 36 H 0.08 3.03 7.67 -2.39 -0.02 3.01 16 37 H 0.04 1.61 7.94 -2.39 -0.02 1.59 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.09 2.46 6.51 -2.39 -0.02 2.44 16 Total: -1.00 -62.79 326.14 -0.19 -62.98 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 0.50 Total: 28.74 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.28 Total: -15.36 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -5.07 Total: -88.86 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.93 Total: -32.06 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -62.79 -0.19 -62.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.359 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds