Wall clock time and date at job start Mon Mar 30 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38617 * 120.07530 * 2 1 4 4 C 1.38876 * 117.96920 * 180.23755 * 3 2 1 5 5 C 1.50699 * 121.01729 * 179.74148 * 4 3 2 6 6 N 1.46895 * 109.46875 * 93.50134 * 5 4 3 7 7 C 1.47899 * 111.00205 * 284.47575 * 6 5 4 8 8 C 1.53996 * 107.06389 * 145.84557 * 7 6 5 9 9 C 1.54594 * 105.13459 * 358.77642 * 8 7 6 10 10 O 1.42901 * 110.73018 * 96.40270 * 9 8 7 11 11 C 1.50708 * 110.72152 * 219.68389 * 9 8 7 12 12 H 1.08003 * 120.00090 * 118.54497 * 11 9 8 13 13 C 1.37874 * 119.99829 * 298.54738 * 11 9 8 14 14 N 1.31518 * 120.00394 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99918 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46705 * 60.00005 * 15 13 11 17 17 H 1.48499 * 109.46998 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47080 * 300.00244 * 15 13 11 19 19 C 1.48539 * 111.00547 * 41.87093 * 6 5 4 20 20 C 1.38617 * 117.96816 * 359.47173 * 4 3 2 21 21 C 1.50691 * 120.07831 * 180.29350 * 20 4 3 22 22 N 1.31933 * 119.84205 * 0.27268 * 20 4 3 23 23 N 1.28348 * 122.18699 * 359.97438 * 22 20 4 24 24 H 1.08997 * 109.47259 * 270.29983 * 1 2 3 25 25 H 1.09001 * 109.47096 * 30.30518 * 1 2 3 26 26 H 1.09008 * 109.47178 * 150.29753 * 1 2 3 27 27 H 1.08004 * 121.01615 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.46805 * 333.50010 * 5 4 3 29 29 H 1.09004 * 109.46789 * 213.49719 * 5 4 3 30 30 H 1.08994 * 109.91954 * 26.48694 * 7 6 5 31 31 H 1.09005 * 109.91492 * 265.19721 * 7 6 5 32 32 H 1.09002 * 110.30570 * 117.68610 * 8 7 6 33 33 H 1.08995 * 110.30696 * 239.86231 * 8 7 6 34 34 H 0.96704 * 113.99704 * 61.44699 * 10 9 8 35 35 H 0.96988 * 120.00179 * 180.02562 * 14 13 11 36 36 H 1.09005 * 110.66046 * 318.71787 * 19 6 5 37 37 H 1.09004 * 110.66779 * 81.67063 * 19 6 5 38 38 H 1.08998 * 109.47147 * 95.55500 * 21 20 4 39 39 H 1.09004 * 109.47326 * 215.55265 * 21 20 4 40 40 H 1.08997 * 109.47068 * 335.55545 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1995 0.0000 4 6 3.5895 1.1485 -0.0051 5 6 4.4129 2.4106 -0.0112 6 7 4.7565 2.7778 1.3690 7 6 3.5917 3.3636 2.0672 8 6 3.6844 2.9306 3.5421 9 6 4.9483 2.0441 3.6239 10 8 6.0733 2.8068 4.0652 11 6 4.7137 0.8635 4.5308 12 1 4.7800 -0.1405 4.1383 13 6 4.4146 1.0651 5.8615 14 7 4.3343 2.2877 6.3396 15 14 4.1232 -0.3983 6.9854 16 1 5.3401 -1.2488 7.0161 17 1 3.8218 0.0836 8.3574 18 1 2.9766 -1.1929 6.4763 19 6 5.1414 1.5799 2.1585 20 6 4.1942 -0.0988 0.0014 21 6 5.6970 -0.2095 0.0030 22 7 3.4508 -1.1888 0.0067 23 7 2.1682 -1.1416 0.0065 24 1 -0.3633 0.0054 1.0276 25 1 -0.3633 0.8872 -0.5186 26 1 -0.3634 -0.8927 -0.5092 27 1 1.6795 2.1450 -0.0004 28 1 3.8395 3.2163 -0.4696 29 1 5.3271 2.2452 -0.5815 30 1 2.6678 2.9882 1.6274 31 1 3.6247 4.4508 1.9966 32 1 3.7920 3.8032 4.1865 33 1 2.8013 2.3574 3.8243 34 1 5.9693 3.1860 4.9487 35 1 4.1242 2.4295 7.2758 36 1 4.4834 0.7413 1.9306 37 1 6.1815 1.3132 1.9705 38 1 6.0513 -0.3304 1.0267 39 1 5.9984 -1.0730 -0.5901 40 1 6.1284 0.6947 -0.4264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:16 Heat of formation + Delta-G solvation = 14.052390 kcal Electronic energy + Delta-G solvation = -22792.491734 eV Core-core repulsion = 19607.775500 eV Total energy + Delta-G solvation = -3184.716233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26812 -38.58002 -35.54753 -34.33098 -33.10357 -32.14980 -30.35398 -29.53510 -28.05412 -26.64616 -26.02058 -24.37144 -23.00672 -21.70443 -20.00655 -19.47898 -17.53924 -17.15593 -15.95586 -15.64144 -15.28123 -14.88806 -14.72634 -14.40218 -14.03986 -13.65734 -13.33383 -13.19557 -12.84440 -12.55677 -12.42275 -12.28802 -12.18610 -12.05564 -11.64454 -11.32969 -11.14065 -10.97882 -10.73074 -10.58307 -10.47605 -10.40495 -9.87862 -9.76349 -9.53846 -9.24997 -9.12008 -8.61702 -8.17287 -7.89540 -6.23857 -4.32109 0.93517 1.05763 3.23013 3.27144 3.31631 3.64739 4.10653 4.27128 4.43157 4.51717 4.61514 4.73145 4.96675 5.03938 5.14835 5.22127 5.45558 5.49494 5.57861 5.60625 5.66086 5.78551 5.83032 5.84729 5.92006 6.01099 6.06222 6.12446 6.28264 6.35570 6.44374 6.51145 6.78590 6.95069 7.27584 7.43045 7.43599 7.50960 7.78019 8.13242 8.70094 8.92363 9.36970 9.50161 10.83108 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.006961 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.870195 B = 4021.626945 C = 4551.024685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.060 3.940 3 C -0.112 4.112 4 C -0.106 4.106 5 C 0.080 3.920 6 N -0.496 5.496 7 C 0.028 3.972 8 C -0.128 4.128 9 C 0.257 3.743 10 O -0.580 6.580 11 C -0.538 4.538 12 H 0.058 0.942 13 C 0.073 3.927 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.042 3.958 20 C 0.083 3.917 21 C -0.112 4.112 22 N -0.243 5.243 23 N -0.247 5.247 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.377 0.623 35 H 0.267 0.733 36 H 0.052 0.948 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.281 1.152 -12.150 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.119 4.119 5 C -0.049 4.049 6 N -0.218 5.218 7 C -0.100 4.100 8 C -0.167 4.167 9 C 0.217 3.783 10 O -0.388 6.388 11 C -0.577 4.577 12 H 0.076 0.924 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.202 1.202 19 C -0.085 4.085 20 C -0.063 4.063 21 C -0.170 4.170 22 N -0.085 5.085 23 N -0.089 5.089 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.162 0.838 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.227 0.773 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.708 -0.187 -12.600 13.135 hybrid contribution -1.265 0.423 1.368 1.911 sum -4.973 0.236 -11.232 12.286 Atomic orbital electron populations 1.20634 0.87797 1.03528 1.03610 1.22794 0.98866 0.90560 0.96291 1.22159 0.94005 0.99632 0.98325 1.21809 0.95170 0.98357 0.96527 1.21550 0.98057 0.91115 0.94173 1.65216 1.31290 1.25583 0.99700 1.23047 0.90977 0.99194 0.96763 1.22922 1.01299 1.00735 0.91778 1.19322 0.82340 0.88270 0.88387 1.86139 1.42924 1.71564 1.38129 1.21532 1.48666 0.93016 0.94477 0.92403 1.24967 0.93861 0.96092 0.98003 1.69716 1.48659 1.19750 1.15197 0.86584 0.78987 0.82631 0.79465 1.19912 1.21037 1.20182 1.23639 1.00112 0.90488 0.94227 1.22720 0.99061 0.89821 0.94671 1.21022 0.87596 1.03572 1.04764 1.72889 0.99305 1.26736 1.09530 1.72855 1.01602 1.24800 1.09635 0.89893 0.90582 0.90203 0.83774 0.89961 0.88947 0.95027 0.91439 0.91334 0.92298 0.77333 0.92282 0.92967 0.90340 0.88594 0.90381 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.20 36.01 0.37 -0.67 16 2 C 0.06 0.89 6.87 -82.41 -0.57 0.32 16 3 C -0.11 -1.59 8.38 -39.21 -0.33 -1.92 16 4 C -0.11 -1.61 3.92 -104.25 -0.41 -2.02 16 5 C 0.08 1.13 5.41 -4.98 -0.03 1.10 16 6 N -0.50 -8.99 5.54 -231.89 -1.28 -10.28 16 7 C 0.03 0.51 6.44 -2.75 -0.02 0.50 16 8 C -0.13 -2.92 5.26 -25.37 -0.13 -3.06 16 9 C 0.26 6.32 0.95 -89.91 -0.09 6.23 16 10 O -0.58 -15.02 13.09 -35.23 -0.46 -15.48 16 11 C -0.54 -14.56 8.14 -34.44 -0.28 -14.84 16 12 H 0.06 1.59 7.78 -52.48 -0.41 1.18 16 13 C 0.07 1.96 5.28 -17.82 -0.09 1.86 16 14 N -0.89 -23.85 11.02 55.43 0.61 -23.24 16 15 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.04 0.88 3.64 -1.90 -0.01 0.87 16 20 C 0.08 1.36 5.24 -82.41 -0.43 0.92 16 21 C -0.11 -1.55 8.50 36.00 0.31 -1.24 16 22 N -0.24 -4.47 11.43 33.59 0.38 -4.08 16 23 N -0.25 -4.39 11.43 33.59 0.38 -4.00 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 27 H 0.14 1.65 7.45 -52.48 -0.39 1.26 16 28 H 0.08 0.99 7.95 -51.93 -0.41 0.58 16 29 H 0.09 1.16 6.19 -51.93 -0.32 0.84 16 30 H 0.03 0.53 5.64 -51.93 -0.29 0.24 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.63 7.99 -51.93 -0.41 1.22 16 33 H 0.06 1.43 7.84 -51.93 -0.41 1.02 16 34 H 0.38 9.88 7.48 45.56 0.34 10.23 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.05 1.12 4.39 -51.93 -0.23 0.89 16 37 H 0.08 1.63 6.78 -51.93 -0.35 1.28 16 38 H 0.10 1.47 6.14 -51.93 -0.32 1.15 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 0.99 5.92 -51.93 -0.31 0.68 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -30.08 312.10 -7.15 -37.23 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -4.76 Total: 11.02 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.71 Total: -11.92 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.09 Total: -41.60 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.46 Total: -15.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.08 -7.15 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.286 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds