Wall clock time and date at job start Mon Mar 30 2020 01:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38617 * 120.07530 * 2 1 4 4 C 1.38876 * 117.96920 * 180.23755 * 3 2 1 5 5 C 1.50699 * 121.01729 * 179.74148 * 4 3 2 6 6 N 1.46895 * 109.46875 * 93.50134 * 5 4 3 7 7 C 1.47899 * 111.00205 * 284.47575 * 6 5 4 8 8 C 1.53996 * 107.06389 * 145.84557 * 7 6 5 9 9 C 1.54594 * 105.13459 * 358.77642 * 8 7 6 10 10 O 1.42901 * 110.73018 * 96.40270 * 9 8 7 11 11 C 1.50708 * 110.72152 * 219.68389 * 9 8 7 12 12 H 1.08003 * 120.00090 * 118.54497 * 11 9 8 13 13 C 1.37874 * 119.99829 * 298.54738 * 11 9 8 14 14 N 1.31518 * 120.00394 * 359.97438 * 13 11 9 15 15 Si 1.86806 * 119.99918 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46705 * 60.00005 * 15 13 11 17 17 H 1.48499 * 109.46998 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47080 * 300.00244 * 15 13 11 19 19 C 1.48539 * 111.00547 * 41.87093 * 6 5 4 20 20 C 1.38617 * 117.96816 * 359.47173 * 4 3 2 21 21 C 1.50691 * 120.07831 * 180.29350 * 20 4 3 22 22 N 1.31933 * 119.84205 * 0.27268 * 20 4 3 23 23 N 1.28348 * 122.18699 * 359.97438 * 22 20 4 24 24 H 1.08997 * 109.47259 * 270.29983 * 1 2 3 25 25 H 1.09001 * 109.47096 * 30.30518 * 1 2 3 26 26 H 1.09008 * 109.47178 * 150.29753 * 1 2 3 27 27 H 1.08004 * 121.01615 * 359.97438 * 3 2 1 28 28 H 1.08996 * 109.46805 * 333.50010 * 5 4 3 29 29 H 1.09004 * 109.46789 * 213.49719 * 5 4 3 30 30 H 1.08994 * 109.91954 * 26.48694 * 7 6 5 31 31 H 1.09005 * 109.91492 * 265.19721 * 7 6 5 32 32 H 1.09002 * 110.30570 * 117.68610 * 8 7 6 33 33 H 1.08995 * 110.30696 * 239.86231 * 8 7 6 34 34 H 0.96704 * 113.99704 * 61.44699 * 10 9 8 35 35 H 0.96988 * 120.00179 * 180.02562 * 14 13 11 36 36 H 1.09005 * 110.66046 * 318.71787 * 19 6 5 37 37 H 1.09004 * 110.66779 * 81.67063 * 19 6 5 38 38 H 1.08998 * 109.47147 * 95.55500 * 21 20 4 39 39 H 1.09004 * 109.47326 * 215.55265 * 21 20 4 40 40 H 1.08997 * 109.47068 * 335.55545 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1995 0.0000 4 6 3.5895 1.1485 -0.0051 5 6 4.4129 2.4106 -0.0112 6 7 4.7565 2.7778 1.3690 7 6 3.5917 3.3636 2.0672 8 6 3.6844 2.9306 3.5421 9 6 4.9483 2.0441 3.6239 10 8 6.0733 2.8068 4.0652 11 6 4.7137 0.8635 4.5308 12 1 4.7800 -0.1405 4.1383 13 6 4.4146 1.0651 5.8615 14 7 4.3343 2.2877 6.3396 15 14 4.1232 -0.3983 6.9854 16 1 5.3401 -1.2488 7.0161 17 1 3.8218 0.0836 8.3574 18 1 2.9766 -1.1929 6.4763 19 6 5.1414 1.5799 2.1585 20 6 4.1942 -0.0988 0.0014 21 6 5.6970 -0.2095 0.0030 22 7 3.4508 -1.1888 0.0067 23 7 2.1682 -1.1416 0.0065 24 1 -0.3633 0.0054 1.0276 25 1 -0.3633 0.8872 -0.5186 26 1 -0.3634 -0.8927 -0.5092 27 1 1.6795 2.1450 -0.0004 28 1 3.8395 3.2163 -0.4696 29 1 5.3271 2.2452 -0.5815 30 1 2.6678 2.9882 1.6274 31 1 3.6247 4.4508 1.9966 32 1 3.7920 3.8032 4.1865 33 1 2.8013 2.3574 3.8243 34 1 5.9693 3.1860 4.9487 35 1 4.1242 2.4295 7.2758 36 1 4.4834 0.7413 1.9306 37 1 6.1815 1.3132 1.9705 38 1 6.0513 -0.3304 1.0267 39 1 5.9984 -1.0730 -0.5901 40 1 6.1284 0.6947 -0.4264 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:15 Heat of formation + Delta-G solvation = -9.305549 kcal Electronic energy + Delta-G solvation = -22793.504610 eV Core-core repulsion = 19607.775500 eV Total energy + Delta-G solvation = -3185.729109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.46718 -40.12367 -37.19861 -35.49518 -34.50865 -34.20755 -31.69318 -30.84709 -29.69948 -27.81926 -27.51949 -25.99085 -24.22574 -23.01128 -21.62690 -21.07584 -19.10960 -18.73257 -17.24353 -17.13648 -16.83160 -16.58678 -16.12363 -15.80147 -15.53469 -15.13858 -14.67395 -14.31285 -14.11171 -13.95982 -13.79589 -13.54860 -13.38506 -13.26951 -13.19265 -13.09517 -12.87025 -12.63284 -12.41791 -12.27851 -12.20265 -11.77575 -11.59788 -11.10139 -10.95486 -10.72217 -10.64605 -10.36016 -10.13378 -9.33969 -8.27605 -6.42536 -0.23304 -0.07814 1.32955 1.34557 1.41924 2.31504 2.46569 2.96891 3.01829 3.11674 3.41201 3.49183 3.63353 3.86724 3.92468 4.05013 4.12764 4.18072 4.33792 4.43402 4.48337 4.56627 4.65888 4.69448 4.70451 4.80274 4.81934 4.89914 4.93267 5.05813 5.16057 5.19650 5.20456 5.39378 5.45014 5.53183 5.70229 5.84015 6.07643 6.21317 6.62110 7.29315 7.45093 7.72935 8.77328 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.006961 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.870195 B = 4021.626945 C = 4551.024685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.053 3.947 3 C -0.111 4.111 4 C -0.114 4.114 5 C 0.082 3.918 6 N -0.499 5.499 7 C 0.035 3.965 8 C -0.121 4.121 9 C 0.237 3.763 10 O -0.586 6.586 11 C -0.563 4.563 12 H 0.041 0.959 13 C 0.037 3.963 14 N -0.905 5.905 15 Si 0.947 3.053 16 H -0.274 1.274 17 H -0.274 1.274 18 H -0.279 1.279 19 C 0.058 3.942 20 C 0.069 3.931 21 C -0.109 4.109 22 N -0.280 5.280 23 N -0.282 5.282 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.179 0.821 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.371 0.629 35 H 0.270 0.730 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 2.371 -13.468 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.093 4.093 3 C -0.140 4.140 4 C -0.126 4.126 5 C -0.046 4.046 6 N -0.221 5.221 7 C -0.092 4.092 8 C -0.160 4.160 9 C 0.197 3.803 10 O -0.394 6.394 11 C -0.602 4.602 12 H 0.059 0.941 13 C -0.165 4.165 14 N -0.544 5.544 15 Si 0.773 3.227 16 H -0.200 1.200 17 H -0.199 1.199 18 H -0.205 1.205 19 C -0.069 4.069 20 C -0.077 4.077 21 C -0.167 4.167 22 N -0.121 5.121 23 N -0.124 5.124 24 H 0.103 0.897 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.196 0.804 28 H 0.133 0.867 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.220 0.780 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.632 1.022 -13.930 14.716 hybrid contribution -1.007 0.044 1.774 2.040 sum -5.639 1.067 -12.156 13.443 Atomic orbital electron populations 1.20778 0.84983 1.05389 1.04206 1.23453 1.00785 0.90164 0.94895 1.22607 0.93812 1.00756 0.96794 1.21982 0.95909 0.98169 0.96567 1.21729 0.99469 0.91584 0.91835 1.65157 1.31542 1.24156 1.01211 1.22989 0.92161 1.00386 0.93670 1.22692 0.99263 0.99176 0.94833 1.19591 0.82779 0.87833 0.90073 1.86131 1.43894 1.71666 1.37690 1.21771 1.49486 0.93255 0.95661 0.94104 1.25558 0.93672 0.98234 0.99017 1.69779 1.48472 1.20680 1.15458 0.85793 0.78510 0.80080 0.78352 1.19977 1.19851 1.20514 1.23350 0.99922 0.91253 0.92397 1.23071 0.99893 0.90183 0.94551 1.21038 0.86533 1.05221 1.03870 1.72794 0.99990 1.28204 1.11087 1.72762 1.01704 1.26731 1.11194 0.89713 0.87288 0.89849 0.80403 0.86678 0.87083 0.92813 0.89489 0.93142 0.94709 0.78039 0.92064 0.93722 0.90638 0.90550 0.89277 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 10.20 71.24 0.73 -1.08 16 2 C 0.05 1.48 6.87 42.64 0.29 1.77 16 3 C -0.11 -2.81 8.38 22.51 0.19 -2.62 16 4 C -0.11 -3.18 3.92 -19.62 -0.08 -3.26 16 5 C 0.08 2.01 5.41 85.56 0.46 2.47 16 6 N -0.50 -16.78 5.54 -887.57 -4.91 -21.70 16 7 C 0.04 1.21 6.44 86.45 0.56 1.77 16 8 C -0.12 -5.45 5.26 31.47 0.17 -5.29 16 9 C 0.24 11.73 0.95 -10.33 -0.01 11.72 16 10 O -0.59 -30.68 13.09 -148.98 -1.95 -32.63 16 11 C -0.56 -31.10 8.14 25.60 0.21 -30.89 16 12 H 0.04 2.32 7.78 -2.91 -0.02 2.30 16 13 C 0.04 1.97 5.28 84.65 0.45 2.42 16 14 N -0.90 -48.67 11.02 21.45 0.24 -48.44 16 15 Si 0.95 43.56 29.54 68.60 2.03 45.59 16 16 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 19 C 0.06 2.40 3.64 86.65 0.32 2.71 16 20 C 0.07 2.22 5.24 42.63 0.22 2.45 16 21 C -0.11 -2.95 8.50 71.23 0.61 -2.34 16 22 N -0.28 -10.37 11.43 -47.63 -0.54 -10.92 16 23 N -0.28 -10.02 11.43 -47.63 -0.54 -10.56 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.11 1.32 8.09 -2.39 -0.02 1.30 16 26 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.18 3.19 7.45 -2.91 -0.02 3.17 16 28 H 0.12 2.14 7.95 -2.39 -0.02 2.12 16 29 H 0.11 2.34 6.19 -2.39 -0.01 2.33 16 30 H 0.05 1.59 5.64 -2.39 -0.01 1.58 16 31 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.05 2.41 7.99 -2.39 -0.02 2.39 16 33 H 0.03 1.69 7.84 -2.39 -0.02 1.67 16 34 H 0.37 19.83 7.48 -74.05 -0.55 19.28 16 35 H 0.27 13.85 8.31 -92.72 -0.77 13.08 16 36 H 0.04 1.92 4.39 -2.38 -0.01 1.91 16 37 H 0.08 3.12 6.78 -2.39 -0.02 3.10 16 38 H 0.08 2.38 6.14 -2.39 -0.01 2.37 16 39 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 40 H 0.10 2.28 5.92 -2.39 -0.01 2.26 16 Total: -1.00 -66.41 312.10 -1.07 -67.48 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.51 Total: 31.34 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.11 Total: -20.16 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -5.77 Total: -91.61 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -1.95 Total: -32.63 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.41 -1.07 -67.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.171 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds