Wall clock time and date at job start Mon Mar 30 2020 02:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34484 * 126.83320 * 2 1 4 4 N 1.36447 * 108.86005 * 179.97438 * 3 2 1 5 5 H 0.96990 * 124.85547 * 179.97438 * 4 3 2 6 6 C 1.34658 * 110.29373 * 359.97438 * 4 3 2 7 7 C 1.36775 * 108.39979 * 359.75427 * 6 4 3 8 8 C 1.47264 * 126.94585 * 180.24253 * 7 6 4 9 9 O 1.21622 * 120.00147 * 180.15080 * 8 7 6 10 10 N 1.34779 * 119.99795 * 0.15620 * 8 7 6 11 11 C 1.47421 * 125.64519 * 179.97438 * 10 8 7 12 12 C 1.54916 * 104.83187 * 204.08973 * 11 10 8 13 13 H 1.09000 * 111.00119 * 81.06266 * 12 11 10 14 14 C 1.52996 * 111.00562 * 204.92045 * 12 11 10 15 15 C 1.55164 * 101.58090 * 322.99212 * 12 11 10 16 16 H 1.08999 * 110.72059 * 277.14172 * 15 12 11 17 17 N 1.46493 * 110.71946 * 154.03972 * 15 12 11 18 18 C 1.36936 * 120.00008 * 155.00043 * 17 15 12 19 19 H 1.07995 * 119.99821 * 0.02562 * 18 17 15 20 20 C 1.38813 * 120.00364 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99808 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00455 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46878 * 59.99851 * 22 20 18 24 24 H 1.48498 * 109.47517 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46871 * 299.99944 * 22 20 18 26 26 C 1.47023 * 125.64974 * 359.68372 * 10 8 7 27 27 H 1.09002 * 109.47152 * 90.02765 * 1 2 3 28 28 H 1.09001 * 109.46980 * 330.02866 * 1 2 3 29 29 H 1.09004 * 109.47113 * 210.02846 * 1 2 3 30 30 H 1.08002 * 125.57078 * 359.93357 * 3 2 1 31 31 H 1.08004 * 125.80548 * 180.02562 * 6 4 3 32 32 H 1.08993 * 110.36984 * 322.92618 * 11 10 8 33 33 H 1.08999 * 110.36529 * 85.14475 * 11 10 8 34 34 H 1.09000 * 109.47478 * 58.54577 * 14 12 11 35 35 H 1.09000 * 109.47302 * 178.54638 * 14 12 11 36 36 H 1.09009 * 109.46988 * 298.54613 * 14 12 11 37 37 H 0.97009 * 120.00205 * 335.00625 * 17 15 12 38 38 H 0.96999 * 120.00267 * 180.02562 * 21 20 18 39 39 H 1.08995 * 109.88456 * 298.40428 * 26 10 8 40 40 H 1.09006 * 109.88032 * 59.56311 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 0.0006 5 1 4.3840 1.2414 0.0003 6 6 3.6657 -0.6901 0.0015 7 6 2.3864 -1.1740 0.0071 8 6 1.9749 -2.5880 0.0150 9 8 0.7937 -2.8776 0.0167 10 7 2.9074 -3.5611 0.0205 11 6 2.6368 -5.0103 0.0291 12 6 3.9081 -5.6474 0.6438 13 1 3.8899 -5.5838 1.7318 14 6 4.0720 -7.0974 0.1839 15 6 5.0248 -4.7469 0.0526 16 1 5.2909 -5.0725 -0.9530 17 7 6.2031 -4.7436 0.9231 18 6 7.4391 -4.4694 0.4014 19 1 7.5452 -4.2552 -0.6518 20 6 8.5556 -4.4667 1.2261 21 7 8.4263 -4.7273 2.5098 22 14 10.2418 -4.0934 0.5142 23 1 10.2360 -2.7352 -0.0861 24 1 11.2593 -4.1524 1.5943 25 1 10.5705 -5.0954 -0.5313 26 6 4.3629 -3.3533 0.0128 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3633 0.8903 0.5134 29 1 -0.3633 -0.8898 0.5143 30 1 1.9868 2.1059 -0.0010 31 1 4.5664 -1.2860 0.0025 32 1 1.7659 -5.2299 0.6466 33 1 2.4819 -5.3733 -0.9869 34 1 4.1308 -7.1292 -0.9040 35 1 4.9856 -7.5125 0.6094 36 1 3.2162 -7.6837 0.5188 37 1 6.1077 -4.9357 1.8692 38 1 9.2064 -4.7251 3.0862 39 1 4.6574 -2.8268 -0.8949 40 1 4.6599 -2.7786 0.8901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939738848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:22 Heat of formation + Delta-G solvation = 4.486996 kcal Electronic energy + Delta-G solvation = -21726.978588 eV Core-core repulsion = 18541.847568 eV Total energy + Delta-G solvation = -3185.131020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.17636 -40.63199 -38.69584 -35.82227 -34.02869 -33.32334 -32.55957 -30.80666 -29.20175 -27.41523 -27.25072 -25.92342 -23.97747 -22.21975 -21.47445 -20.93606 -19.70482 -19.06640 -18.59359 -17.53407 -17.16249 -16.43505 -16.19276 -15.57429 -15.31642 -15.12294 -14.96451 -14.54585 -14.22523 -14.06082 -13.98329 -13.60049 -13.55032 -13.37803 -13.22022 -12.93053 -12.82629 -12.78306 -12.31906 -12.20824 -12.06541 -12.00423 -11.66692 -11.42730 -10.96198 -10.81605 -9.77534 -9.43485 -9.17484 -9.03152 -7.91373 -5.21335 0.76841 1.50416 1.52103 1.53792 1.59714 2.03732 2.47853 2.54304 2.59945 3.39768 3.52445 3.83991 3.90308 3.97945 4.06786 4.24151 4.26567 4.37024 4.45666 4.49259 4.61573 4.65349 4.75406 4.87537 4.90532 4.91571 4.95315 5.11928 5.12809 5.15445 5.33332 5.35015 5.37985 5.52428 5.57944 5.86014 5.97627 6.28450 6.60656 6.67907 7.28695 7.36609 8.07859 8.32725 9.31308 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017093 B = 0.005226 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.724833 B = 5356.877118 C = 6726.864391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.150 4.150 3 C -0.007 4.007 4 N -0.536 5.536 5 H 0.435 0.565 6 C 0.046 3.954 7 C -0.264 4.264 8 C 0.593 3.407 9 O -0.590 6.590 10 N -0.614 5.614 11 C 0.118 3.882 12 C -0.105 4.105 13 H 0.069 0.931 14 C -0.126 4.126 15 C 0.171 3.829 16 H 0.073 0.927 17 N -0.720 5.720 18 C -0.241 4.241 19 H 0.082 0.918 20 C -0.067 4.067 21 N -0.968 5.968 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.302 1.302 25 H -0.280 1.280 26 C 0.082 3.918 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.208 0.792 31 H 0.188 0.812 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.375 0.625 38 H 0.250 0.750 39 H 0.074 0.926 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 9.048 -6.636 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.156 4.156 3 C -0.135 4.135 4 N -0.131 5.131 5 H 0.275 0.725 6 C -0.092 4.092 7 C -0.274 4.274 8 C 0.386 3.614 9 O -0.473 6.473 10 N -0.346 5.346 11 C -0.005 4.005 12 C -0.125 4.125 13 H 0.087 0.913 14 C -0.184 4.184 15 C 0.061 3.939 16 H 0.091 0.909 17 N -0.358 5.358 18 C -0.372 4.372 19 H 0.100 0.900 20 C -0.260 4.260 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.202 1.202 24 H -0.228 1.228 25 H -0.206 1.206 26 C -0.043 4.043 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.225 0.775 31 H 0.204 0.796 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.207 0.793 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.561 9.104 -6.758 15.495 hybrid contribution 1.442 0.125 0.401 1.502 sum -9.119 9.229 -6.356 14.448 Atomic orbital electron populations 1.20096 0.89177 1.02180 1.01724 1.20829 0.96262 0.90734 1.07731 1.22092 0.81986 1.00034 1.09370 1.41627 1.09104 1.06161 1.56187 0.72457 1.22879 0.98886 0.84951 1.02480 1.20419 0.94336 0.92118 1.20559 1.17510 0.84037 0.84669 0.75203 1.90659 1.18055 1.84314 1.54252 1.48358 1.06954 1.06646 1.72639 1.22262 0.97745 0.79152 1.01301 1.22551 0.93513 0.96458 0.99942 0.91278 1.21548 1.01837 0.93370 1.01620 1.21443 0.86222 0.91329 0.94940 0.90867 1.42460 1.02203 1.83403 1.07773 1.19602 0.85271 1.38410 0.93925 0.89990 1.25473 1.01288 1.03379 0.95862 1.69809 1.29761 1.57506 1.04699 0.85308 0.79956 0.78349 0.76693 1.20150 1.22848 1.20596 1.23235 0.78601 1.01509 1.00987 0.91957 0.89870 0.93420 0.77533 0.79581 0.91193 0.90262 0.91583 0.93327 0.91026 0.79291 0.94123 0.90821 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.86 9.98 71.24 0.71 -1.15 16 2 C -0.15 -4.07 6.35 -18.51 -0.12 -4.19 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.85 16 4 N -0.54 -10.18 5.90 -194.55 -1.15 -11.33 16 5 H 0.44 5.06 8.96 -92.72 -0.83 4.23 16 6 C 0.05 1.21 10.42 83.92 0.87 2.09 16 7 C -0.26 -8.46 6.26 -19.04 -0.12 -8.58 16 8 C 0.59 21.92 7.84 86.62 0.68 22.60 16 9 O -0.59 -24.77 15.57 -4.10 -0.06 -24.83 16 10 N -0.61 -20.72 3.33 -815.82 -2.71 -23.44 16 11 C 0.12 3.60 6.37 86.86 0.55 4.15 16 12 C -0.10 -3.28 3.27 -9.40 -0.03 -3.31 16 13 H 0.07 2.37 8.01 -2.39 -0.02 2.35 16 14 C -0.13 -3.42 9.30 71.98 0.67 -2.75 16 15 C 0.17 6.12 3.07 46.19 0.14 6.26 16 16 H 0.07 2.57 7.96 -2.39 -0.02 2.55 16 17 N -0.72 -32.78 5.16 -317.32 -1.64 -34.42 16 18 C -0.24 -12.05 9.96 84.03 0.84 -11.22 16 19 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -3.59 5.50 84.86 0.47 -3.12 16 21 N -0.97 -56.02 13.06 21.65 0.28 -55.74 16 22 Si 0.97 43.05 29.55 68.60 2.03 45.08 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.08 2.72 4.76 86.73 0.41 3.14 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.47 6.84 -2.38 -0.02 1.45 16 30 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.19 4.88 4.42 -2.91 -0.01 4.87 16 32 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 33 H 0.08 2.19 8.04 -2.39 -0.02 2.17 16 34 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.37 18.86 7.76 -92.70 -0.72 18.14 16 38 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 39 H 0.07 2.24 7.05 -2.39 -0.02 2.22 16 40 H 0.06 2.25 6.74 -2.38 -0.02 2.23 16 Total: -1.00 -68.19 327.49 2.32 -65.87 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.48 Total: 34.04 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.06 Total: 4.77 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -5.22 Total: -124.92 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.06 Total: -24.83 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -68.19 2.32 -65.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939738848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.357 kcal (2) G-P(sol) polarization free energy of solvation -68.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds