Wall clock time and date at job start Mon Mar 30 2020 01:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39834 * 126.45474 * 2 1 4 4 C 1.35452 * 107.86604 * 179.97438 * 3 2 1 5 5 N 1.35535 * 108.86718 * 359.76687 * 4 3 2 6 6 C 1.46498 * 125.67737 * 180.26339 * 5 4 3 7 7 C 1.37656 * 108.64466 * 0.37956 * 5 4 3 8 8 C 1.46680 * 126.22987 * 179.89137 * 7 5 4 9 9 O 1.21690 * 120.00106 * 99.01053 * 8 7 5 10 10 N 1.34773 * 119.99904 * 279.00958 * 8 7 5 11 11 C 1.47424 * 125.64857 * 354.81470 * 10 8 7 12 12 C 1.54913 * 104.83397 * 155.83798 * 11 10 8 13 13 C 1.55156 * 101.57972 * 37.00592 * 12 11 10 14 14 H 1.09005 * 110.71853 * 83.04385 * 13 12 11 15 15 N 1.46501 * 110.72162 * 206.13357 * 13 12 11 16 16 C 1.36936 * 120.00228 * 273.55190 * 15 13 12 17 17 H 1.08000 * 120.00131 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99731 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00193 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46970 * 269.99720 * 20 18 16 22 22 H 1.48497 * 109.47219 * 29.99917 * 20 18 16 23 23 H 1.48501 * 109.47098 * 150.00303 * 20 18 16 24 24 C 1.47024 * 125.64890 * 174.77239 * 10 8 7 25 25 H 1.09003 * 109.47276 * 270.04414 * 1 2 3 26 26 H 1.09003 * 109.47435 * 30.04215 * 1 2 3 27 27 H 1.09006 * 109.47247 * 150.04012 * 1 2 3 28 28 H 1.08002 * 126.06847 * 359.94459 * 3 2 1 29 29 H 1.07997 * 125.56524 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47346 * 275.06809 * 6 5 4 31 31 H 1.09002 * 109.47252 * 35.07314 * 6 5 4 32 32 H 1.09005 * 109.47404 * 155.06687 * 6 5 4 33 33 H 1.09002 * 110.37048 * 37.00126 * 11 10 8 34 34 H 1.08998 * 110.37408 * 274.67124 * 11 10 8 35 35 H 1.09004 * 111.00101 * 278.94090 * 12 11 10 36 36 H 1.08997 * 111.00849 * 155.08502 * 12 11 10 37 37 H 0.97006 * 119.99760 * 93.55001 * 15 13 12 38 38 H 0.96997 * 120.00396 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.88197 * 61.68014 * 24 10 8 40 40 H 1.09000 * 109.88529 * 300.51448 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6283 -0.6624 0.0062 6 6 4.8225 -1.5110 0.0140 7 6 2.3262 -1.1088 0.0006 8 6 1.8899 -2.5092 0.0016 9 8 1.5460 -3.0387 1.0419 10 7 1.8698 -3.2096 -1.1497 11 6 2.1545 -2.6670 -2.4906 12 6 2.6104 -3.8901 -3.3248 13 6 1.6870 -5.0069 -2.7704 14 1 0.7134 -4.9807 -3.2600 15 7 2.3107 -6.3227 -2.9314 16 6 2.1545 -7.0158 -4.1020 17 1 1.5713 -6.5927 -4.9065 18 6 2.7460 -8.2623 -4.2547 19 7 2.5964 -8.9283 -5.3800 20 14 3.7555 -8.9939 -2.8635 21 1 5.1738 -8.5787 -3.0097 22 1 3.2294 -8.5092 -1.5622 23 1 3.6659 -10.4754 -2.9129 24 6 1.5611 -4.6415 -1.2763 25 1 -0.3634 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3634 -0.8904 -0.5132 28 1 2.0135 2.1549 -0.0008 29 1 4.4972 1.3254 0.0003 30 1 5.1750 -1.6517 -1.0077 31 1 5.6037 -1.0334 0.6054 32 1 4.5773 -2.4793 0.4503 33 1 2.9514 -1.9251 -2.4383 34 1 1.2544 -2.2284 -2.9214 35 1 3.6590 -4.1216 -3.1377 36 1 2.4315 -3.7269 -4.3875 37 1 2.8343 -6.7029 -2.2087 38 1 3.0099 -9.7992 -5.4869 39 1 0.5449 -4.8335 -0.9321 40 1 2.2699 -5.2267 -0.6906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968508908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:33 Heat of formation + Delta-G solvation = 36.365663 kcal Electronic energy + Delta-G solvation = -21746.853373 eV Core-core repulsion = 18563.104716 eV Total energy + Delta-G solvation = -3183.748657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50976 -39.45501 -37.34259 -34.31124 -33.83753 -31.74945 -30.47946 -29.84597 -28.74593 -27.66738 -25.38564 -23.96363 -22.77725 -21.43121 -20.27410 -20.20115 -18.59054 -17.81041 -17.41953 -16.42425 -15.98003 -15.34062 -15.02754 -14.64342 -14.10252 -13.87903 -13.61505 -13.41366 -13.32658 -13.20604 -12.90664 -12.65582 -12.54659 -12.15874 -12.10454 -12.03875 -11.93723 -11.60028 -11.48003 -10.96064 -10.77118 -10.59523 -10.16017 -10.03470 -9.68715 -9.04623 -8.66875 -8.58208 -8.16028 -7.40768 -5.86796 -3.24691 1.79373 2.23104 2.73740 2.88169 3.21982 3.31179 3.34543 3.40084 4.47906 4.50370 4.53124 4.86258 4.88600 4.91267 5.08102 5.10956 5.18706 5.20950 5.24528 5.43372 5.50676 5.58349 5.60038 5.69233 5.78635 5.83449 5.94110 5.95764 6.06454 6.20234 6.23777 6.37749 6.46727 6.71700 6.77031 6.93197 7.11255 7.51581 7.86817 8.11155 8.31472 9.07852 9.80315 9.98208 11.30891 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.004186 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.735268 B = 6687.226702 C = 6860.320105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.116 4.116 3 C -0.201 4.201 4 C 0.002 3.998 5 N -0.424 5.424 6 C 0.068 3.932 7 C -0.032 4.032 8 C 0.602 3.398 9 O -0.532 6.532 10 N -0.603 5.603 11 C 0.103 3.897 12 C -0.152 4.152 13 C 0.177 3.823 14 H 0.075 0.925 15 N -0.740 5.740 16 C -0.250 4.250 17 H 0.093 0.907 18 C 0.010 3.990 19 N -0.930 5.930 20 Si 0.882 3.118 21 H -0.284 1.284 22 H -0.276 1.276 23 H -0.289 1.289 24 C 0.098 3.902 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.166 0.834 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.363 0.637 38 H 0.261 0.739 39 H 0.072 0.928 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 20.271 9.150 22.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C -0.225 4.225 4 C -0.131 4.131 5 N -0.099 5.099 6 C -0.073 4.073 7 C -0.145 4.145 8 C 0.388 3.612 9 O -0.408 6.408 10 N -0.337 5.337 11 C -0.020 4.020 12 C -0.194 4.194 13 C 0.066 3.934 14 H 0.093 0.907 15 N -0.382 5.382 16 C -0.379 4.379 17 H 0.111 0.889 18 C -0.186 4.186 19 N -0.576 5.576 20 Si 0.712 3.288 21 H -0.210 1.210 22 H -0.202 1.202 23 H -0.215 1.215 24 C -0.025 4.025 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.183 0.817 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.196 0.804 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.293 19.632 9.540 21.947 hybrid contribution 0.989 -0.567 0.847 1.420 sum 3.281 19.065 10.386 21.957 Atomic orbital electron populations 1.20183 0.89819 1.02062 1.01941 1.19733 0.95296 0.90898 1.06431 1.20642 0.91687 0.98362 1.11803 1.21831 0.99370 0.82390 1.09474 1.43815 1.04991 1.06298 1.54810 1.22136 0.85892 0.95499 1.03787 1.19979 0.84001 0.93304 1.17242 1.16761 0.78370 0.83541 0.82491 1.90838 1.48471 1.70015 1.31434 1.48482 1.67771 1.10684 1.06767 1.22391 1.00372 0.97358 0.81914 1.23525 1.01495 0.94580 0.99759 1.21161 0.95957 0.85692 0.90558 0.90744 1.42714 1.61589 1.16956 1.16947 1.19029 1.28161 0.98976 0.91782 0.88926 1.24661 1.00283 0.96946 0.96756 1.69691 1.48519 1.14679 1.24752 0.86590 0.80708 0.78888 0.82579 1.21028 1.20246 1.21545 1.22345 1.01299 0.79743 0.99086 0.91599 0.91508 0.92298 0.84217 0.81691 0.90205 0.89405 0.89800 0.91539 0.91158 0.90833 0.89911 0.80369 0.92883 0.90972 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.20 36.01 0.37 -0.56 16 2 C -0.12 -1.49 6.21 -104.16 -0.65 -2.13 16 3 C -0.20 -2.14 10.76 -39.98 -0.43 -2.57 16 4 C 0.00 0.02 11.38 -16.91 -0.19 -0.17 16 5 N -0.42 -4.86 3.16 -120.24 -0.38 -5.24 16 6 C 0.07 0.61 10.98 59.85 0.66 1.27 16 7 C -0.03 -0.45 5.48 -81.98 -0.45 -0.90 16 8 C 0.60 9.82 6.60 -12.85 -0.08 9.73 16 9 O -0.53 -10.50 17.44 5.20 0.09 -10.41 16 10 N -0.60 -9.18 3.33 -172.06 -0.57 -9.75 16 11 C 0.10 1.35 6.73 -2.53 -0.02 1.33 16 12 C -0.15 -2.33 6.77 -24.58 -0.17 -2.50 16 13 C 0.18 3.18 3.59 -66.10 -0.24 2.94 16 14 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 15 N -0.74 -16.56 5.05 -51.65 -0.26 -16.82 16 16 C -0.25 -6.70 10.46 -15.06 -0.16 -6.86 16 17 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 18 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 19 N -0.93 -28.33 13.97 55.49 0.78 -27.56 16 20 Si 0.88 21.48 27.74 -169.99 -4.71 16.76 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.10 1.63 6.62 -3.06 -0.02 1.61 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.71 7.96 -51.93 -0.41 0.29 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.88 7.68 -51.93 -0.40 0.48 16 33 H 0.07 0.81 7.61 -51.93 -0.40 0.41 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.36 8.10 5.37 -40.82 -0.22 7.88 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 LS Contribution 334.74 15.07 5.04 5.04 Total: -1.00 -33.04 334.74 -7.56 -40.60 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.07 Total: 6.00 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.47 Total: 1.37 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.44 Total: -59.37 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.04 -7.56 -40.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968508908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.966 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds