Wall clock time and date at job start Mon Mar 30 2020 01:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39834 * 126.45474 * 2 1 4 4 C 1.35452 * 107.86604 * 179.97438 * 3 2 1 5 5 N 1.35535 * 108.86718 * 359.76687 * 4 3 2 6 6 C 1.46498 * 125.67737 * 180.26339 * 5 4 3 7 7 C 1.37656 * 108.64466 * 0.37956 * 5 4 3 8 8 C 1.46680 * 126.22987 * 179.89137 * 7 5 4 9 9 O 1.21690 * 120.00106 * 99.01053 * 8 7 5 10 10 N 1.34773 * 119.99904 * 279.00958 * 8 7 5 11 11 C 1.47424 * 125.64857 * 354.81470 * 10 8 7 12 12 C 1.54913 * 104.83397 * 155.83798 * 11 10 8 13 13 C 1.55156 * 101.57972 * 37.00592 * 12 11 10 14 14 H 1.09005 * 110.71853 * 83.04385 * 13 12 11 15 15 N 1.46501 * 110.72162 * 206.13357 * 13 12 11 16 16 C 1.36936 * 120.00228 * 273.55190 * 15 13 12 17 17 H 1.08000 * 120.00131 * 359.97438 * 16 15 13 18 18 C 1.38810 * 119.99731 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99923 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00193 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46970 * 269.99720 * 20 18 16 22 22 H 1.48497 * 109.47219 * 29.99917 * 20 18 16 23 23 H 1.48501 * 109.47098 * 150.00303 * 20 18 16 24 24 C 1.47024 * 125.64890 * 174.77239 * 10 8 7 25 25 H 1.09003 * 109.47276 * 270.04414 * 1 2 3 26 26 H 1.09003 * 109.47435 * 30.04215 * 1 2 3 27 27 H 1.09006 * 109.47247 * 150.04012 * 1 2 3 28 28 H 1.08002 * 126.06847 * 359.94459 * 3 2 1 29 29 H 1.07997 * 125.56524 * 179.97438 * 4 3 2 30 30 H 1.08996 * 109.47346 * 275.06809 * 6 5 4 31 31 H 1.09002 * 109.47252 * 35.07314 * 6 5 4 32 32 H 1.09005 * 109.47404 * 155.06687 * 6 5 4 33 33 H 1.09002 * 110.37048 * 37.00126 * 11 10 8 34 34 H 1.08998 * 110.37408 * 274.67124 * 11 10 8 35 35 H 1.09004 * 111.00101 * 278.94090 * 12 11 10 36 36 H 1.08997 * 111.00849 * 155.08502 * 12 11 10 37 37 H 0.97006 * 119.99760 * 93.55001 * 15 13 12 38 38 H 0.96997 * 120.00396 * 179.97438 * 19 18 16 39 39 H 1.09000 * 109.88197 * 61.68014 * 24 10 8 40 40 H 1.09000 * 109.88529 * 300.51448 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6283 -0.6624 0.0062 6 6 4.8225 -1.5110 0.0140 7 6 2.3262 -1.1088 0.0006 8 6 1.8899 -2.5092 0.0016 9 8 1.5460 -3.0387 1.0419 10 7 1.8698 -3.2096 -1.1497 11 6 2.1545 -2.6670 -2.4906 12 6 2.6104 -3.8901 -3.3248 13 6 1.6870 -5.0069 -2.7704 14 1 0.7134 -4.9807 -3.2600 15 7 2.3107 -6.3227 -2.9314 16 6 2.1545 -7.0158 -4.1020 17 1 1.5713 -6.5927 -4.9065 18 6 2.7460 -8.2623 -4.2547 19 7 2.5964 -8.9283 -5.3800 20 14 3.7555 -8.9939 -2.8635 21 1 5.1738 -8.5787 -3.0097 22 1 3.2294 -8.5092 -1.5622 23 1 3.6659 -10.4754 -2.9129 24 6 1.5611 -4.6415 -1.2763 25 1 -0.3634 0.0008 1.0277 26 1 -0.3634 0.8896 -0.5145 27 1 -0.3634 -0.8904 -0.5132 28 1 2.0135 2.1549 -0.0008 29 1 4.4972 1.3254 0.0003 30 1 5.1750 -1.6517 -1.0077 31 1 5.6037 -1.0334 0.6054 32 1 4.5773 -2.4793 0.4503 33 1 2.9514 -1.9251 -2.4383 34 1 1.2544 -2.2284 -2.9214 35 1 3.6590 -4.1216 -3.1377 36 1 2.4315 -3.7269 -4.3875 37 1 2.8343 -6.7029 -2.2087 38 1 3.0099 -9.7992 -5.4869 39 1 0.5449 -4.8335 -0.9321 40 1 2.2699 -5.2267 -0.6906 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968508908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:32 Heat of formation + Delta-G solvation = 14.991316 kcal Electronic energy + Delta-G solvation = -21747.780234 eV Core-core repulsion = 18563.104716 eV Total energy + Delta-G solvation = -3184.675518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.40854 -40.68678 -38.74422 -36.07336 -34.63978 -33.61242 -31.68928 -31.03960 -29.91230 -28.81954 -26.24761 -25.48226 -24.34938 -22.50792 -21.72351 -21.08991 -19.76459 -19.67373 -18.46187 -17.64142 -17.28155 -16.37903 -16.20041 -16.02767 -15.77004 -15.27274 -14.79826 -14.63582 -14.39027 -14.17934 -14.11396 -13.75750 -13.66866 -13.55935 -13.45297 -13.15736 -12.90390 -12.85210 -12.74902 -12.46526 -12.32696 -12.24103 -11.83529 -11.74783 -11.33374 -11.01324 -9.87387 -9.46149 -9.37337 -9.04759 -8.03947 -5.39121 0.85657 1.17789 1.37658 1.39215 1.46340 1.74206 1.96471 2.22589 2.46336 3.24353 3.38936 3.46241 3.71181 3.84662 3.89956 4.16238 4.22941 4.27204 4.30411 4.33565 4.39305 4.40326 4.51678 4.59472 4.75609 4.80024 4.86049 4.88530 5.03437 5.12264 5.14929 5.18037 5.32484 5.43958 5.75145 5.93342 6.04989 6.19139 6.29503 6.39151 6.86538 7.03440 7.77359 7.95556 9.16888 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029047 B = 0.004186 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.735268 B = 6687.226702 C = 6860.320105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.124 4.124 3 C -0.213 4.213 4 C 0.020 3.980 5 N -0.427 5.427 6 C 0.064 3.936 7 C -0.072 4.072 8 C 0.606 3.394 9 O -0.577 6.577 10 N -0.601 5.601 11 C 0.114 3.886 12 C -0.141 4.141 13 C 0.171 3.829 14 H 0.072 0.928 15 N -0.744 5.744 16 C -0.229 4.229 17 H 0.066 0.934 18 C -0.056 4.056 19 N -0.980 5.980 20 Si 0.947 3.053 21 H -0.277 1.277 22 H -0.257 1.257 23 H -0.297 1.297 24 C 0.106 3.894 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.163 0.837 29 H 0.206 0.794 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.365 0.635 38 H 0.258 0.742 39 H 0.069 0.931 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 23.021 10.147 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C -0.237 4.237 4 C -0.113 4.113 5 N -0.102 5.102 6 C -0.077 4.077 7 C -0.184 4.184 8 C 0.394 3.606 9 O -0.456 6.456 10 N -0.333 5.333 11 C -0.008 4.008 12 C -0.182 4.182 13 C 0.062 3.938 14 H 0.090 0.910 15 N -0.387 5.387 16 C -0.360 4.360 17 H 0.084 0.916 18 C -0.248 4.248 19 N -0.630 5.630 20 Si 0.775 3.225 21 H -0.203 1.203 22 H -0.182 1.182 23 H -0.224 1.224 24 C -0.017 4.017 25 H 0.081 0.919 26 H 0.108 0.892 27 H 0.063 0.937 28 H 0.180 0.820 29 H 0.222 0.778 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.198 0.802 38 H 0.067 0.933 39 H 0.088 0.912 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.691 22.442 10.548 25.070 hybrid contribution 0.501 -1.286 0.516 1.474 sum 4.192 21.155 11.064 24.239 Atomic orbital electron populations 1.20216 0.89493 1.02455 1.01877 1.20088 0.95947 0.91451 1.05784 1.20976 0.91785 0.98855 1.12086 1.22523 1.00526 0.81814 1.06436 1.44028 1.04555 1.07206 1.54416 1.22310 0.85716 0.94635 1.04999 1.19725 0.85754 0.91978 1.20979 1.17121 0.77291 0.84402 0.81746 1.90800 1.50536 1.71308 1.32946 1.48508 1.67305 1.09961 1.07540 1.22402 1.01636 0.96511 0.80238 1.23341 1.00433 0.94156 1.00266 1.21312 0.96160 0.84587 0.91750 0.91036 1.42684 1.62079 1.18363 1.15578 1.18992 1.25994 0.98743 0.92279 0.91571 1.25393 1.02397 0.97777 0.99231 1.69856 1.50678 1.15216 1.27218 0.85530 0.79300 0.77347 0.80308 1.20296 1.18239 1.22390 1.22100 1.00984 0.80915 0.97745 0.91903 0.89228 0.93739 0.81969 0.77765 0.88962 0.86363 0.92031 0.89696 0.89645 0.91259 0.89451 0.80154 0.93278 0.91228 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 10.20 71.24 0.73 -1.04 16 2 C -0.12 -2.95 6.21 -19.57 -0.12 -3.07 16 3 C -0.21 -3.83 10.76 22.01 0.24 -3.60 16 4 C 0.02 0.31 11.38 83.48 0.95 1.27 16 5 N -0.43 -8.59 3.16 -534.32 -1.69 -10.28 16 6 C 0.06 0.97 10.98 127.77 1.40 2.37 16 7 C -0.07 -1.90 5.48 40.35 0.22 -1.68 16 8 C 0.61 19.53 6.60 86.45 0.57 20.10 16 9 O -0.58 -23.16 17.44 -4.32 -0.08 -23.24 16 10 N -0.60 -17.75 3.33 -816.49 -2.72 -20.46 16 11 C 0.11 2.77 6.73 86.86 0.58 3.35 16 12 C -0.14 -4.10 6.77 31.99 0.22 -3.89 16 13 C 0.17 6.03 3.59 46.18 0.17 6.20 16 14 H 0.07 2.58 8.12 -2.38 -0.02 2.56 16 15 N -0.74 -32.95 5.05 -317.33 -1.60 -34.55 16 16 C -0.23 -12.42 10.46 84.03 0.88 -11.54 16 17 H 0.07 3.88 8.06 -2.91 -0.02 3.85 16 18 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 19 N -0.98 -61.12 13.97 21.65 0.30 -60.81 16 20 Si 0.95 44.50 27.74 68.60 1.90 46.40 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -11.13 6.52 99.48 0.65 -10.48 16 23 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 24 C 0.11 3.49 6.62 86.73 0.57 4.07 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.04 7.96 -2.38 -0.02 1.03 16 28 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.22 7.68 -2.38 -0.02 1.20 16 33 H 0.08 1.82 7.61 -2.39 -0.02 1.80 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.36 15.87 5.37 -92.70 -0.50 15.37 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.07 7.69 -2.39 -0.02 2.06 16 Total: -1.00 -73.01 334.74 3.47 -69.54 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.47 Total: 23.59 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.87 Total: 9.81 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -5.71 Total: -126.11 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.08 Total: -23.24 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Total: -73.01 3.47 -69.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968508908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.536 kcal (2) G-P(sol) polarization free energy of solvation -73.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds