Wall clock time and date at job start Mon Mar 30 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35448 * 125.56510 * 2 1 4 4 C 1.39833 * 107.86729 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.45744 * 179.73882 * 4 3 2 6 6 C 1.37878 * 107.08083 * 359.97438 * 4 3 2 7 7 C 1.46683 * 126.22874 * 179.97438 * 6 4 3 8 8 O 1.21694 * 119.99908 * 354.49522 * 7 6 4 9 9 N 1.34771 * 119.99761 * 174.49291 * 7 6 4 10 10 C 1.47428 * 125.64883 * 184.48237 * 9 7 6 11 11 C 1.55128 * 104.71984 * 155.81609 * 10 9 7 12 12 C 1.55152 * 101.48848 * 37.30114 * 11 10 9 13 13 H 1.09002 * 110.72763 * 82.69122 * 12 11 10 14 14 N 1.46508 * 110.71999 * 205.96770 * 12 11 10 15 15 C 1.36938 * 119.99667 * 199.97101 * 14 12 11 16 16 H 1.07998 * 120.00351 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99510 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00427 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99724 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47229 * 90.00199 * 19 17 15 21 21 H 1.48504 * 109.46923 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.47253 * 329.99918 * 19 17 15 23 23 C 1.47024 * 125.64920 * 4.78991 * 9 7 6 24 24 N 1.35525 * 125.56123 * 180.02562 * 2 1 3 25 25 H 0.96999 * 125.68050 * 359.95539 * 24 2 1 26 26 H 1.08996 * 109.46927 * 89.97280 * 1 2 3 27 27 H 1.09000 * 109.46892 * 209.97638 * 1 2 3 28 28 H 1.09000 * 109.47043 * 329.97376 * 1 2 3 29 29 H 1.08002 * 126.06625 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47195 * 90.02357 * 5 4 3 31 31 H 1.09002 * 109.46761 * 210.02020 * 5 4 3 32 32 H 1.08995 * 109.47113 * 330.02272 * 5 4 3 33 33 H 1.08990 * 110.36492 * 274.74780 * 10 9 7 34 34 H 1.09001 * 110.36173 * 37.07291 * 10 9 7 35 35 H 1.09002 * 111.19523 * 279.18982 * 11 10 9 36 36 H 1.09003 * 110.90087 * 155.27589 * 11 10 9 37 37 H 0.96994 * 119.99699 * 19.97484 * 14 12 11 38 38 H 0.96996 * 120.00455 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.88216 * 300.43997 * 23 9 7 40 40 H 1.09004 * 109.88005 * 61.45012 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 4.8486 1.5592 -0.0063 6 6 3.6122 -0.7020 -0.0004 7 6 4.7860 -1.5816 -0.0013 8 8 5.9019 -1.1070 -0.1036 9 7 4.6287 -2.9153 0.1110 10 6 5.7179 -3.9031 0.2175 11 6 5.0754 -5.1234 0.9278 12 6 3.6538 -5.1294 0.3064 13 1 3.6578 -5.6309 -0.6614 14 7 2.6936 -5.7609 1.2151 15 6 1.5051 -6.2387 0.7310 16 1 1.2753 -6.1495 -0.3205 17 6 0.5956 -6.8375 1.5918 18 7 0.8753 -6.9457 2.8734 19 14 -1.0255 -7.4898 0.9313 20 1 -0.8584 -8.9072 0.5211 21 1 -2.0633 -7.4000 1.9898 22 1 -1.4435 -6.6809 -0.2417 23 6 3.3424 -3.6269 0.1414 24 7 2.2953 -1.1025 -0.0005 25 1 1.9833 -2.0210 -0.0003 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5142 29 1 1.9545 2.1268 0.0004 30 1 5.1452 1.7758 1.0200 31 1 5.6633 1.0485 -0.5198 32 1 4.6210 2.4914 -0.5232 33 1 6.0746 -4.1826 -0.7737 34 1 6.5355 -3.5029 0.8170 35 1 5.0298 -4.9726 2.0063 36 1 5.6115 -6.0411 0.6855 37 1 2.8998 -5.8406 2.1595 38 1 0.2396 -7.3638 3.4750 39 1 2.7452 -3.2774 0.9836 40 1 2.8032 -3.4578 -0.7907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969104669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:45 Heat of formation + Delta-G solvation = 20.789907 kcal Electronic energy + Delta-G solvation = -21748.957269 eV Core-core repulsion = 18564.533197 eV Total energy + Delta-G solvation = -3184.424072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.38265 -39.26926 -37.29986 -34.22167 -32.66981 -32.03095 -31.25211 -29.76546 -27.89027 -27.35857 -26.32199 -24.05612 -22.67482 -20.84662 -20.32290 -19.99910 -18.88456 -17.43764 -17.21517 -16.13531 -15.79894 -15.05763 -14.86017 -14.48929 -13.83151 -13.60445 -13.45750 -13.19963 -13.08381 -12.91330 -12.87421 -12.80220 -12.45475 -12.12570 -12.01279 -11.94133 -11.64210 -11.39495 -11.23047 -10.96897 -10.87780 -10.44960 -10.18754 -9.93638 -9.73019 -9.14985 -8.66953 -8.49020 -7.84184 -7.24867 -5.97838 -3.30309 1.61579 2.77477 3.08439 3.29924 3.34472 3.36487 3.37534 3.55492 4.40143 4.70144 4.87261 4.98970 5.08260 5.20130 5.25703 5.29943 5.42849 5.49355 5.50743 5.52232 5.61883 5.79693 5.84504 5.85241 5.95206 5.97130 6.01725 6.05274 6.18853 6.21736 6.33491 6.46637 6.51199 6.67547 6.92965 7.10903 7.49695 7.53450 7.71022 8.18895 8.34053 9.31271 9.83873 10.18976 11.23700 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.005386 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.373084 B = 5197.077320 C = 6598.758177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.050 3.950 3 C -0.214 4.214 4 C -0.079 4.079 5 C -0.088 4.088 6 C -0.054 4.054 7 C 0.602 3.398 8 O -0.541 6.541 9 N -0.616 5.616 10 C 0.113 3.887 11 C -0.140 4.140 12 C 0.175 3.825 13 H 0.069 0.931 14 N -0.713 5.713 15 C -0.257 4.257 16 H 0.073 0.927 17 C -0.005 4.005 18 N -0.926 5.926 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.062 3.938 24 N -0.535 5.535 25 H 0.422 0.578 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.388 0.612 38 H 0.258 0.742 39 H 0.072 0.928 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.298 11.903 -5.653 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C -0.238 4.238 4 C -0.088 4.088 5 C -0.145 4.145 6 C -0.166 4.166 7 C 0.393 3.607 8 O -0.419 6.419 9 N -0.349 5.349 10 C -0.010 4.010 11 C -0.179 4.179 12 C 0.062 3.938 13 H 0.087 0.913 14 N -0.353 5.353 15 C -0.388 4.388 16 H 0.091 0.909 17 C -0.202 4.202 18 N -0.573 5.573 19 Si 0.738 3.262 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.065 4.065 24 N -0.137 5.137 25 H 0.266 0.734 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.157 0.843 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.223 0.777 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.709 11.929 -5.780 13.765 hybrid contribution -1.280 -0.870 0.049 1.548 sum 2.429 11.060 -5.731 12.691 Atomic orbital electron populations 1.20427 0.87790 1.03764 1.02948 1.20577 0.93769 0.86493 1.05996 1.20501 0.91780 0.97717 1.13779 1.19856 0.95393 0.90899 1.02667 1.20315 0.94841 0.97394 1.01926 1.20102 0.83086 0.93897 1.19557 1.16745 0.87416 0.80013 0.76574 1.90757 1.24657 1.74579 1.51933 1.48453 1.09171 1.05015 1.72298 1.22224 0.90199 0.88179 1.00406 1.23118 0.96964 0.97037 1.00786 1.21158 0.88673 0.88754 0.95183 0.91323 1.42403 1.17212 1.68425 1.07245 1.19238 0.93708 1.32253 0.93567 0.90924 1.24786 0.98950 1.00996 0.95444 1.69655 1.36608 1.48624 1.02408 0.86196 0.83268 0.79022 0.77677 1.21432 1.21610 1.20639 1.23490 0.84973 0.97699 1.00323 1.42731 1.05444 1.09391 1.56097 0.73398 0.90709 0.91131 0.89906 0.84300 0.91876 0.90142 0.92272 0.91491 0.90631 0.90425 0.89765 0.77731 0.93167 0.90942 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 10.41 36.01 0.38 -0.54 16 2 C 0.05 0.67 7.13 -81.95 -0.58 0.08 16 3 C -0.21 -2.87 10.66 -39.98 -0.43 -3.30 16 4 C -0.08 -1.22 6.21 -104.16 -0.65 -1.86 16 5 C -0.09 -1.18 9.89 36.01 0.36 -0.82 16 6 C -0.05 -0.89 6.89 -81.98 -0.56 -1.45 16 7 C 0.60 10.69 7.81 -12.85 -0.10 10.59 16 8 O -0.54 -10.50 15.07 5.19 0.08 -10.42 16 9 N -0.62 -10.13 3.32 -171.91 -0.57 -10.70 16 10 C 0.11 1.64 6.90 -2.41 -0.02 1.63 16 11 C -0.14 -2.11 6.71 -24.47 -0.16 -2.28 16 12 C 0.17 3.12 3.59 -66.09 -0.24 2.88 16 13 H 0.07 1.22 8.12 -51.93 -0.42 0.79 16 14 N -0.71 -16.14 5.18 -51.65 -0.27 -16.41 16 15 C -0.26 -6.49 9.98 -15.06 -0.15 -6.64 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 18 N -0.93 -26.24 13.06 55.49 0.72 -25.52 16 19 Si 0.91 20.88 29.55 -169.99 -5.02 15.86 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.06 1.03 4.88 -3.06 -0.01 1.01 16 24 N -0.54 -8.00 5.60 -5.69 -0.03 -8.04 16 25 H 0.42 6.19 4.97 -40.82 -0.20 5.99 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.20 6.38 -51.93 -0.33 0.87 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.08 1.23 8.00 -51.93 -0.42 0.82 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.39 9.49 7.71 -40.82 -0.31 9.18 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.07 1.31 6.89 -51.93 -0.36 0.95 16 40 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -29.86 328.31 -8.18 -38.05 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -5.77 Total: 13.14 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.27 Total: -0.91 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.15 Total: -60.66 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.86 -8.18 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969104669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.836 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds