Wall clock time and date at job start Mon Mar 30 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35448 * 125.56510 * 2 1 4 4 C 1.39833 * 107.86729 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.45744 * 179.73882 * 4 3 2 6 6 C 1.37878 * 107.08083 * 359.97438 * 4 3 2 7 7 C 1.46683 * 126.22874 * 179.97438 * 6 4 3 8 8 O 1.21694 * 119.99908 * 354.49522 * 7 6 4 9 9 N 1.34771 * 119.99761 * 174.49291 * 7 6 4 10 10 C 1.47428 * 125.64883 * 184.48237 * 9 7 6 11 11 C 1.55128 * 104.71984 * 155.81609 * 10 9 7 12 12 C 1.55152 * 101.48848 * 37.30114 * 11 10 9 13 13 H 1.09002 * 110.72763 * 82.69122 * 12 11 10 14 14 N 1.46508 * 110.71999 * 205.96770 * 12 11 10 15 15 C 1.36938 * 119.99667 * 199.97101 * 14 12 11 16 16 H 1.07998 * 120.00351 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99510 * 179.97438 * 15 14 12 18 18 N 1.31618 * 120.00427 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99724 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47229 * 90.00199 * 19 17 15 21 21 H 1.48504 * 109.46923 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.47253 * 329.99918 * 19 17 15 23 23 C 1.47024 * 125.64920 * 4.78991 * 9 7 6 24 24 N 1.35525 * 125.56123 * 180.02562 * 2 1 3 25 25 H 0.96999 * 125.68050 * 359.95539 * 24 2 1 26 26 H 1.08996 * 109.46927 * 89.97280 * 1 2 3 27 27 H 1.09000 * 109.46892 * 209.97638 * 1 2 3 28 28 H 1.09000 * 109.47043 * 329.97376 * 1 2 3 29 29 H 1.08002 * 126.06625 * 0.02562 * 3 2 1 30 30 H 1.09005 * 109.47195 * 90.02357 * 5 4 3 31 31 H 1.09002 * 109.46761 * 210.02020 * 5 4 3 32 32 H 1.08995 * 109.47113 * 330.02272 * 5 4 3 33 33 H 1.08990 * 110.36492 * 274.74780 * 10 9 7 34 34 H 1.09001 * 110.36173 * 37.07291 * 10 9 7 35 35 H 1.09002 * 111.19523 * 279.18982 * 11 10 9 36 36 H 1.09003 * 110.90087 * 155.27589 * 11 10 9 37 37 H 0.96994 * 119.99699 * 19.97484 * 14 12 11 38 38 H 0.96996 * 120.00455 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.88216 * 300.43997 * 23 9 7 40 40 H 1.09004 * 109.88005 * 61.45012 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 4.8486 1.5592 -0.0063 6 6 3.6122 -0.7020 -0.0004 7 6 4.7860 -1.5816 -0.0013 8 8 5.9019 -1.1070 -0.1036 9 7 4.6287 -2.9153 0.1110 10 6 5.7179 -3.9031 0.2175 11 6 5.0754 -5.1234 0.9278 12 6 3.6538 -5.1294 0.3064 13 1 3.6578 -5.6309 -0.6614 14 7 2.6936 -5.7609 1.2151 15 6 1.5051 -6.2387 0.7310 16 1 1.2753 -6.1495 -0.3205 17 6 0.5956 -6.8375 1.5918 18 7 0.8753 -6.9457 2.8734 19 14 -1.0255 -7.4898 0.9313 20 1 -0.8584 -8.9072 0.5211 21 1 -2.0633 -7.4000 1.9898 22 1 -1.4435 -6.6809 -0.2417 23 6 3.3424 -3.6269 0.1414 24 7 2.2953 -1.1025 -0.0005 25 1 1.9833 -2.0210 -0.0003 26 1 -0.3633 0.0005 -1.0276 27 1 -0.3633 -0.8902 0.5135 28 1 -0.3633 0.8897 0.5142 29 1 1.9545 2.1268 0.0004 30 1 5.1452 1.7758 1.0200 31 1 5.6633 1.0485 -0.5198 32 1 4.6210 2.4914 -0.5232 33 1 6.0746 -4.1826 -0.7737 34 1 6.5355 -3.5029 0.8170 35 1 5.0298 -4.9726 2.0063 36 1 5.6115 -6.0411 0.6855 37 1 2.8998 -5.8406 2.1595 38 1 0.2396 -7.3638 3.4750 39 1 2.7452 -3.2774 0.9836 40 1 2.8032 -3.4578 -0.7907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969104669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:45 Heat of formation + Delta-G solvation = 2.434068 kcal Electronic energy + Delta-G solvation = -21749.753238 eV Core-core repulsion = 18564.533197 eV Total energy + Delta-G solvation = -3185.220041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.52274 -40.57338 -38.71585 -35.94305 -33.82511 -33.40345 -32.63066 -31.11839 -29.27817 -28.48705 -27.52010 -25.79602 -24.01956 -22.15742 -21.58091 -21.19035 -20.04458 -19.25941 -18.51862 -17.51905 -17.16326 -16.49120 -16.18095 -15.82648 -15.36973 -15.13339 -14.83324 -14.50935 -14.27287 -14.02842 -13.93013 -13.82878 -13.60670 -13.42750 -13.19302 -13.09330 -12.93618 -12.88398 -12.57591 -12.51465 -12.39115 -12.11708 -11.79186 -11.68550 -11.14871 -10.96454 -9.88270 -9.70012 -9.13789 -8.97030 -7.97994 -5.29432 0.40591 1.49036 1.50170 1.57867 1.70978 1.83150 2.20343 2.27722 2.54222 3.32086 3.40401 3.76235 3.81246 3.83077 3.94037 4.17919 4.20009 4.26059 4.28836 4.46848 4.54776 4.61197 4.73972 4.77163 4.81674 4.87298 4.89406 4.92369 5.05396 5.09789 5.12842 5.23261 5.32364 5.45684 5.51042 5.85024 6.00416 6.21820 6.36481 6.45210 7.00866 7.30208 7.99769 8.24358 9.24630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.005386 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.373084 B = 5197.077320 C = 6598.758177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.055 3.945 3 C -0.219 4.219 4 C -0.087 4.087 5 C -0.085 4.085 6 C -0.092 4.092 7 C 0.596 3.404 8 O -0.566 6.566 9 N -0.617 5.617 10 C 0.113 3.887 11 C -0.128 4.128 12 C 0.169 3.831 13 H 0.077 0.923 14 N -0.724 5.724 15 C -0.248 4.248 16 H 0.083 0.917 17 C -0.065 4.065 18 N -0.966 5.966 19 Si 0.968 3.032 20 H -0.289 1.289 21 H -0.299 1.299 22 H -0.266 1.266 23 C 0.077 3.923 24 N -0.541 5.541 25 H 0.420 0.580 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.167 0.833 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.376 0.624 38 H 0.252 0.748 39 H 0.057 0.943 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.549 12.960 -6.981 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.242 4.242 4 C -0.096 4.096 5 C -0.142 4.142 6 C -0.204 4.204 7 C 0.388 3.612 8 O -0.446 6.446 9 N -0.350 5.350 10 C -0.009 4.009 11 C -0.167 4.167 12 C 0.058 3.942 13 H 0.094 0.906 14 N -0.363 5.363 15 C -0.379 4.379 16 H 0.101 0.899 17 C -0.259 4.259 18 N -0.615 5.615 19 Si 0.798 3.202 20 H -0.217 1.217 21 H -0.226 1.226 22 H -0.190 1.190 23 C -0.049 4.049 24 N -0.142 5.142 25 H 0.263 0.737 26 H 0.109 0.891 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.185 0.815 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.209 0.791 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.985 13.002 -7.157 15.139 hybrid contribution -1.008 -1.116 0.422 1.562 sum 1.978 11.886 -6.736 13.804 Atomic orbital electron populations 1.20570 0.85290 1.04658 1.04273 1.21249 0.95331 0.85933 1.03911 1.20858 0.90841 0.99124 1.13425 1.20281 0.96864 0.90757 1.01678 1.20315 0.93648 0.97988 1.02213 1.20134 0.83407 0.94446 1.22369 1.16987 0.87629 0.80328 0.76222 1.90730 1.25602 1.74955 1.53353 1.48484 1.09422 1.05072 1.72017 1.22334 0.89772 0.87379 1.01376 1.23035 0.95359 0.98252 1.00011 1.21352 0.89143 0.88877 0.94831 0.90559 1.42526 1.17513 1.68930 1.07293 1.19635 0.94162 1.30241 0.93869 0.89925 1.25515 1.02188 1.02439 0.95708 1.69805 1.37547 1.50589 1.03608 0.85225 0.79558 0.78293 0.77162 1.21652 1.22601 1.19019 1.23160 0.85027 0.96562 1.00164 1.42764 1.05192 1.09759 1.56474 0.73656 0.89060 0.91550 0.87684 0.81524 0.91529 0.92068 0.89692 0.89704 0.90385 0.91443 0.87747 0.79116 0.93955 0.92517 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 10.41 71.24 0.74 -0.81 16 2 C 0.05 1.35 7.13 41.35 0.29 1.64 16 3 C -0.22 -5.39 10.66 22.01 0.23 -5.15 16 4 C -0.09 -2.56 6.21 -19.56 -0.12 -2.68 16 5 C -0.08 -2.19 9.89 71.24 0.70 -1.49 16 6 C -0.09 -3.01 6.89 40.35 0.28 -2.73 16 7 C 0.60 21.19 7.81 86.45 0.68 21.87 16 8 O -0.57 -22.13 15.07 -4.33 -0.07 -22.20 16 9 N -0.62 -19.98 3.32 -816.03 -2.71 -22.69 16 10 C 0.11 3.18 6.90 86.93 0.60 3.78 16 11 C -0.13 -3.71 6.71 32.06 0.21 -3.50 16 12 C 0.17 5.85 3.59 46.18 0.17 6.02 16 13 H 0.08 2.56 8.12 -2.39 -0.02 2.54 16 14 N -0.72 -32.62 5.18 -317.31 -1.64 -34.26 16 15 C -0.25 -12.34 9.98 84.03 0.84 -11.51 16 16 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 18 N -0.97 -55.57 13.06 21.65 0.28 -55.29 16 19 Si 0.97 42.76 29.55 68.60 2.03 44.79 16 20 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 23 C 0.08 2.53 4.88 86.73 0.42 2.95 16 24 N -0.54 -15.74 5.60 -171.93 -0.96 -16.70 16 25 H 0.42 12.13 4.97 -92.71 -0.46 11.67 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.06 1.83 6.38 -2.39 -0.02 1.81 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 35 H 0.07 2.11 8.00 -2.39 -0.02 2.10 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.38 18.65 7.71 -92.71 -0.72 17.93 16 38 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 39 H 0.06 2.06 6.89 -2.39 -0.02 2.04 16 40 H 0.07 2.02 7.31 -2.39 -0.02 2.00 16 Total: -1.00 -64.01 328.31 2.33 -61.68 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.12 Total: 39.29 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.52 Total: 5.38 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -5.04 Total: -128.94 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.07 Total: -22.20 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -64.01 2.33 -61.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969104669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.114 kcal (2) G-P(sol) polarization free energy of solvation -64.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds