Wall clock time and date at job start Mon Mar 30 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34665 * 125.80128 * 2 1 4 4 H 0.96998 * 124.85157 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29422 * 180.02562 * 3 2 1 6 6 C 1.34485 * 108.86008 * 359.97438 * 5 3 2 7 7 C 1.36761 * 125.80257 * 180.32470 * 2 1 3 8 8 C 1.47269 * 126.94357 * 359.97106 * 7 2 1 9 9 O 1.21628 * 119.99414 * 0.17111 * 8 7 2 10 10 N 1.34773 * 120.00107 * 180.16793 * 8 7 2 11 11 C 1.46504 * 119.99854 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47066 * 35.00023 * 11 10 8 13 13 C 1.53002 * 109.47235 * 275.00262 * 11 10 8 14 14 C 1.53000 * 109.46947 * 155.00229 * 11 10 8 15 15 C 1.53947 * 113.74174 * 276.67178 * 14 11 10 16 16 N 1.47579 * 86.11830 * 222.04992 * 15 14 11 17 17 C 1.36933 * 134.49249 * 204.64241 * 16 15 14 18 18 H 1.07998 * 120.00042 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99943 * 359.97438 * 17 16 15 20 20 N 1.31612 * 120.00180 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47236 * 60.00492 * 21 19 17 23 23 H 1.48498 * 109.47318 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47258 * 300.00398 * 21 19 17 25 25 C 1.47579 * 91.01307 * 24.64174 * 16 15 14 26 26 H 1.09002 * 109.46713 * 89.97235 * 1 2 3 27 27 H 1.08996 * 109.47309 * 209.97771 * 1 2 3 28 28 H 1.09001 * 109.47013 * 329.97862 * 1 2 3 29 29 H 1.08002 * 125.56718 * 180.02562 * 5 3 2 30 30 H 1.08002 * 126.83113 * 179.97438 * 6 5 3 31 31 H 0.96998 * 120.00270 * 0.02562 * 10 8 7 32 32 H 1.09008 * 109.47072 * 60.00011 * 13 11 10 33 33 H 1.08994 * 109.46966 * 179.97438 * 13 11 10 34 34 H 1.08998 * 109.46898 * 299.99863 * 13 11 10 35 35 H 1.09000 * 112.94353 * 48.41038 * 14 11 10 36 36 H 1.09006 * 113.77043 * 336.35562 * 15 14 11 37 37 H 1.09007 * 113.76627 * 107.74757 * 15 14 11 38 38 H 0.97003 * 120.00530 * 179.97438 * 20 19 17 39 39 H 1.09002 * 113.77254 * 221.05462 * 25 16 15 40 40 H 1.09006 * 113.77196 * 89.66209 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7274 -0.0006 6 6 3.6882 -0.6151 -0.0004 7 6 2.3070 -1.1092 -0.0063 8 6 1.8702 -2.5156 -0.0137 9 8 0.6839 -2.7838 -0.0178 10 7 2.7850 -3.5053 -0.0159 11 6 2.3504 -4.9044 -0.0227 12 1 1.4399 -4.9992 -0.6144 13 6 2.0760 -5.3602 1.4118 14 6 3.4489 -5.7767 -0.6337 15 6 3.4248 -5.8164 -2.1725 16 7 3.6886 -7.2623 -2.0393 17 6 4.2577 -8.2121 -2.8449 18 1 4.3343 -9.2340 -2.5039 19 6 4.7352 -7.8618 -4.1003 20 7 4.6415 -6.6166 -4.5162 21 14 5.5110 -9.1577 -5.1996 22 1 4.5199 -10.2278 -5.4786 23 1 5.9376 -8.5323 -6.4771 24 1 6.6926 -9.7432 -4.5168 25 6 3.0928 -7.2733 -0.6892 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 4.4498 1.4060 -0.0003 30 1 4.5890 -1.2109 -0.0011 31 1 3.7311 -3.2914 -0.0123 32 1 1.2934 -4.7387 1.8471 33 1 1.7522 -6.4009 1.4067 34 1 2.9865 -5.2654 2.0036 35 1 4.4343 -5.5753 -0.2135 36 1 2.4502 -5.5854 -2.6027 37 1 4.2393 -5.2623 -2.6391 38 1 4.9755 -6.3717 -5.3933 39 1 3.6421 -7.8826 0.0286 40 1 2.0207 -7.4704 -0.6836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969471950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:59 Heat of formation + Delta-G solvation = 54.868227 kcal Electronic energy + Delta-G solvation = -21291.637028 eV Core-core repulsion = 18108.690702 eV Total energy + Delta-G solvation = -3182.946326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26028 -39.19175 -37.76843 -34.59345 -32.21184 -31.58782 -31.34552 -29.80866 -27.42488 -26.42760 -24.79024 -23.94993 -22.64950 -21.01840 -20.40954 -19.74105 -18.51300 -17.70410 -16.69824 -15.91994 -15.69779 -15.06423 -14.80418 -14.19152 -13.94131 -13.76161 -13.67119 -13.26826 -13.04227 -12.88432 -12.76429 -12.61649 -12.30611 -11.95029 -11.61830 -11.55123 -11.20886 -11.19081 -10.83567 -10.66544 -10.26220 -9.87526 -9.64942 -9.48327 -9.29065 -8.92430 -8.72451 -8.57268 -8.19568 -6.79587 -5.69482 -3.01625 1.81817 2.38797 3.03033 3.43824 3.47609 3.49089 3.72450 3.81634 4.51492 4.75772 4.90378 5.11287 5.12934 5.29899 5.39307 5.42988 5.48477 5.57315 5.63445 5.79025 5.81825 5.90490 5.94860 6.06190 6.14649 6.18974 6.37454 6.49305 6.53077 6.69865 6.70687 6.81031 6.86065 7.02770 7.33064 7.33890 7.46784 7.64805 7.99738 8.05922 8.69506 9.11897 9.77992 10.68725 11.47454 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.003809 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.954050 B = 7350.198758 C = 7964.068112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.100 3.900 3 N -0.556 5.556 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.165 4.165 7 C -0.231 4.231 8 C 0.590 3.410 9 O -0.557 6.557 10 N -0.713 5.713 11 C 0.152 3.848 12 H 0.086 0.914 13 C -0.157 4.157 14 C -0.146 4.146 15 C 0.171 3.829 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.129 3.871 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.398 0.602 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.026 0.974 37 H 0.071 0.929 38 H 0.253 0.747 39 H 0.043 0.957 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 16.484 12.156 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.018 4.018 3 N -0.152 5.152 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.189 4.189 7 C -0.240 4.240 8 C 0.378 3.622 9 O -0.438 6.438 10 N -0.362 5.362 11 C 0.047 3.953 12 H 0.104 0.896 13 C -0.216 4.216 14 C -0.166 4.166 15 C 0.046 3.954 16 N -0.339 5.339 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.003 3.997 26 H 0.095 0.905 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.185 0.815 30 H 0.164 0.836 31 H 0.232 0.768 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.354 16.263 11.840 20.582 hybrid contribution 0.882 -0.112 -0.788 1.188 sum -3.471 16.151 11.053 19.877 Atomic orbital electron populations 1.20560 0.87094 1.03968 1.03492 1.20338 0.93693 0.85668 1.02052 1.41577 1.06288 1.08281 1.59012 0.75029 1.21691 0.85593 0.96488 1.11098 1.22090 0.95993 0.93666 1.07182 1.20242 0.93169 0.92366 1.18263 1.17318 0.85426 0.84002 0.75412 1.90704 1.16711 1.84484 1.51867 1.45850 1.09558 1.05972 1.74833 1.21038 0.98702 0.79275 0.96243 0.89569 1.22130 1.01283 1.01461 0.96692 1.23795 0.97340 0.95614 0.99814 1.22255 0.98617 0.85787 0.88746 1.45952 1.67280 1.06323 1.14371 1.18987 1.30649 0.89551 0.95897 0.90374 1.24771 1.01724 0.96610 0.97351 1.69813 1.51345 1.15962 1.19736 0.86219 0.79116 0.80518 0.80017 1.21236 1.21598 1.21131 1.22504 0.96083 0.92421 0.88705 0.90462 0.87963 0.92170 0.81497 0.83633 0.76789 0.92815 0.91614 0.92874 0.89504 0.95666 0.91085 0.93668 0.93850 0.94772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 9.87 36.01 0.36 -0.60 16 2 C 0.10 1.17 7.17 -81.88 -0.59 0.58 16 3 N -0.56 -4.74 5.90 -9.11 -0.05 -4.79 16 4 H 0.41 2.06 8.96 -40.82 -0.37 1.69 16 5 C -0.02 -0.19 11.89 -16.83 -0.20 -0.39 16 6 C -0.16 -1.87 10.56 -37.50 -0.40 -2.27 16 7 C -0.23 -3.19 6.29 -103.35 -0.65 -3.84 16 8 C 0.59 9.64 7.77 -12.59 -0.10 9.54 16 9 O -0.56 -10.50 14.48 5.25 0.08 -10.43 16 10 N -0.71 -10.90 5.07 -54.93 -0.28 -11.18 16 11 C 0.15 2.52 2.42 -67.93 -0.16 2.36 16 12 H 0.09 1.64 7.37 -51.93 -0.38 1.26 16 13 C -0.16 -2.25 9.29 37.16 0.35 -1.91 16 14 C -0.15 -2.73 3.50 -89.69 -0.31 -3.05 16 15 C 0.17 4.15 7.07 -2.98 -0.02 4.13 16 16 N -0.61 -16.19 3.70 -177.89 -0.66 -16.85 16 17 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.97 11.38 55.49 0.63 -27.34 16 21 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.13 2.69 7.56 -2.98 -0.02 2.67 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 1.26 6.48 -51.93 -0.34 0.93 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.15 1.43 7.70 -52.49 -0.40 1.02 16 31 H 0.40 5.34 7.73 -40.82 -0.32 5.02 16 32 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.06 0.90 7.43 -51.93 -0.39 0.51 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.03 0.65 7.96 -51.93 -0.41 0.24 16 37 H 0.07 1.89 7.16 -51.93 -0.37 1.52 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -35.02 332.90 -8.20 -43.22 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.90 Total: 4.53 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.01 Total: 0.29 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.36 Total: -60.15 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.02 -8.20 -43.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969471950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.085 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds