Wall clock time and date at job start Mon Mar 30 2020 01:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34665 * 125.80128 * 2 1 4 4 H 0.96998 * 124.85157 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29422 * 180.02562 * 3 2 1 6 6 C 1.34485 * 108.86008 * 359.97438 * 5 3 2 7 7 C 1.36761 * 125.80257 * 180.32470 * 2 1 3 8 8 C 1.47269 * 126.94357 * 359.97106 * 7 2 1 9 9 O 1.21628 * 119.99414 * 0.17111 * 8 7 2 10 10 N 1.34773 * 120.00107 * 180.16793 * 8 7 2 11 11 C 1.46504 * 119.99854 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47066 * 35.00023 * 11 10 8 13 13 C 1.53002 * 109.47235 * 275.00262 * 11 10 8 14 14 C 1.53000 * 109.46947 * 155.00229 * 11 10 8 15 15 C 1.53947 * 113.74174 * 276.67178 * 14 11 10 16 16 N 1.47579 * 86.11830 * 222.04992 * 15 14 11 17 17 C 1.36933 * 134.49249 * 204.64241 * 16 15 14 18 18 H 1.07998 * 120.00042 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99943 * 359.97438 * 17 16 15 20 20 N 1.31612 * 120.00180 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99866 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47236 * 60.00492 * 21 19 17 23 23 H 1.48498 * 109.47318 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47258 * 300.00398 * 21 19 17 25 25 C 1.47579 * 91.01307 * 24.64174 * 16 15 14 26 26 H 1.09002 * 109.46713 * 89.97235 * 1 2 3 27 27 H 1.08996 * 109.47309 * 209.97771 * 1 2 3 28 28 H 1.09001 * 109.47013 * 329.97862 * 1 2 3 29 29 H 1.08002 * 125.56718 * 180.02562 * 5 3 2 30 30 H 1.08002 * 126.83113 * 179.97438 * 6 5 3 31 31 H 0.96998 * 120.00270 * 0.02562 * 10 8 7 32 32 H 1.09008 * 109.47072 * 60.00011 * 13 11 10 33 33 H 1.08994 * 109.46966 * 179.97438 * 13 11 10 34 34 H 1.08998 * 109.46898 * 299.99863 * 13 11 10 35 35 H 1.09000 * 112.94353 * 48.41038 * 14 11 10 36 36 H 1.09006 * 113.77043 * 336.35562 * 15 14 11 37 37 H 1.09007 * 113.76627 * 107.74757 * 15 14 11 38 38 H 0.97003 * 120.00530 * 179.97438 * 20 19 17 39 39 H 1.09002 * 113.77254 * 221.05462 * 25 16 15 40 40 H 1.09006 * 113.77196 * 89.66209 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7274 -0.0006 6 6 3.6882 -0.6151 -0.0004 7 6 2.3070 -1.1092 -0.0063 8 6 1.8702 -2.5156 -0.0137 9 8 0.6839 -2.7838 -0.0178 10 7 2.7850 -3.5053 -0.0159 11 6 2.3504 -4.9044 -0.0227 12 1 1.4399 -4.9992 -0.6144 13 6 2.0760 -5.3602 1.4118 14 6 3.4489 -5.7767 -0.6337 15 6 3.4248 -5.8164 -2.1725 16 7 3.6886 -7.2623 -2.0393 17 6 4.2577 -8.2121 -2.8449 18 1 4.3343 -9.2340 -2.5039 19 6 4.7352 -7.8618 -4.1003 20 7 4.6415 -6.6166 -4.5162 21 14 5.5110 -9.1577 -5.1996 22 1 4.5199 -10.2278 -5.4786 23 1 5.9376 -8.5323 -6.4771 24 1 6.6926 -9.7432 -4.5168 25 6 3.0928 -7.2733 -0.6892 26 1 -0.3633 0.0005 -1.0277 27 1 -0.3634 -0.8901 0.5135 28 1 -0.3633 0.8898 0.5142 29 1 4.4498 1.4060 -0.0003 30 1 4.5890 -1.2109 -0.0011 31 1 3.7311 -3.2914 -0.0123 32 1 1.2934 -4.7387 1.8471 33 1 1.7522 -6.4009 1.4067 34 1 2.9865 -5.2654 2.0036 35 1 4.4343 -5.5753 -0.2135 36 1 2.4502 -5.5854 -2.6027 37 1 4.2393 -5.2623 -2.6391 38 1 4.9755 -6.3717 -5.3933 39 1 3.6421 -7.8826 0.0286 40 1 2.0207 -7.4704 -0.6836 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969471950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:59 Heat of formation + Delta-G solvation = 30.380705 kcal Electronic energy + Delta-G solvation = -21292.698887 eV Core-core repulsion = 18108.690702 eV Total energy + Delta-G solvation = -3184.008184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10367 -40.60323 -39.35658 -36.07138 -34.16289 -32.55832 -32.37592 -31.01935 -29.32277 -27.31603 -26.53282 -25.63743 -24.02711 -22.28060 -21.44508 -21.12764 -19.92229 -18.73534 -18.51914 -17.27847 -16.97431 -16.78944 -16.07201 -15.73781 -15.34754 -15.13096 -14.78838 -14.57161 -14.29475 -14.01606 -13.93215 -13.55701 -13.38653 -13.37792 -13.21869 -13.06429 -12.85682 -12.63771 -12.54468 -12.42745 -11.99488 -11.71438 -11.45137 -11.21028 -10.86440 -10.71710 -10.00469 -9.65336 -9.05604 -8.90965 -7.88778 -5.23075 0.82093 1.45463 1.49645 1.55682 1.60006 2.20815 2.48661 2.61658 2.67849 3.31762 3.40935 3.77254 3.97325 3.98135 4.16790 4.32904 4.35014 4.38622 4.55034 4.62231 4.71672 4.75281 4.76365 4.85134 4.90244 5.01524 5.04689 5.09960 5.15380 5.27233 5.34917 5.37359 5.53084 5.62910 5.74017 5.85010 5.95087 6.03669 6.69311 6.82106 6.92724 7.47090 7.62169 8.58724 9.27977 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.003809 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.954050 B = 7350.198758 C = 7964.068112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.002 4.002 6 C -0.190 4.190 7 C -0.271 4.271 8 C 0.582 3.418 9 O -0.593 6.593 10 N -0.709 5.709 11 C 0.161 3.839 12 H 0.057 0.943 13 C -0.147 4.147 14 C -0.109 4.109 15 C 0.168 3.832 16 N -0.644 5.644 17 C -0.239 4.239 18 H 0.086 0.914 19 C -0.069 4.069 20 N -0.956 5.956 21 Si 0.981 3.019 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.272 1.272 25 C 0.130 3.870 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.208 0.792 30 H 0.154 0.846 31 H 0.408 0.592 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.000 1.000 37 H 0.041 0.959 38 H 0.248 0.752 39 H 0.066 0.934 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 17.473 13.565 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.023 4.023 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.130 4.130 6 C -0.214 4.214 7 C -0.281 4.281 8 C 0.373 3.627 9 O -0.476 6.476 10 N -0.359 5.359 11 C 0.056 3.944 12 H 0.075 0.925 13 C -0.205 4.205 14 C -0.128 4.128 15 C 0.043 3.957 16 N -0.370 5.370 17 C -0.367 4.367 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.605 5.605 21 Si 0.809 3.191 22 H -0.205 1.205 23 H -0.221 1.221 24 H -0.198 1.198 25 C 0.005 3.995 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.112 0.888 29 H 0.224 0.776 30 H 0.172 0.828 31 H 0.243 0.757 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.018 0.982 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.389 17.270 13.292 22.055 hybrid contribution 0.550 -0.353 -1.209 1.375 sum -2.839 16.917 12.083 20.982 Atomic orbital electron populations 1.20519 0.86508 1.04344 1.03475 1.20488 0.94342 0.86135 1.01379 1.41582 1.05979 1.08623 1.57365 0.72692 1.22280 0.86443 0.96204 1.08071 1.22306 0.95199 0.95054 1.08809 1.20278 0.95209 0.91431 1.21196 1.17792 0.84990 0.85258 0.74633 1.90674 1.18081 1.85189 1.53632 1.45765 1.10091 1.05330 1.74725 1.20788 0.96429 0.79891 0.97319 0.92504 1.22034 1.02086 1.01707 0.94709 1.23429 0.98830 0.95030 0.95548 1.22123 0.96045 0.85069 0.92498 1.46380 1.67739 1.06706 1.16205 1.19456 1.30267 0.90469 0.96534 0.89654 1.25668 1.02823 0.98701 0.98936 1.70025 1.52702 1.17977 1.19748 0.85121 0.78474 0.77896 0.77656 1.20500 1.22063 1.19795 1.22690 0.96470 0.93856 0.86449 0.90627 0.90570 0.88773 0.77565 0.82842 0.75662 0.93307 0.90719 0.90915 0.87858 0.98184 0.94101 0.94328 0.91579 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.87 71.24 0.70 -1.10 16 2 C 0.10 2.14 7.17 41.78 0.30 2.44 16 3 N -0.54 -7.70 5.90 -182.73 -1.08 -8.78 16 4 H 0.43 2.78 8.96 -92.71 -0.83 1.95 16 5 C 0.00 -0.04 11.89 83.12 0.99 0.95 16 6 C -0.19 -4.05 10.56 23.62 0.25 -3.80 16 7 C -0.27 -7.47 6.29 -19.04 -0.12 -7.59 16 8 C 0.58 19.59 7.77 86.62 0.67 20.27 16 9 O -0.59 -23.37 14.48 -4.12 -0.06 -23.43 16 10 N -0.71 -21.95 5.07 -445.94 -2.26 -24.21 16 11 C 0.16 5.36 2.42 44.99 0.11 5.47 16 12 H 0.06 2.25 7.37 -2.39 -0.02 2.23 16 13 C -0.15 -4.01 9.29 71.98 0.67 -3.34 16 14 C -0.11 -4.05 3.50 -10.13 -0.04 -4.08 16 15 C 0.17 8.45 7.07 86.48 0.61 9.07 16 16 N -0.64 -34.36 3.70 -716.73 -2.65 -37.01 16 17 C -0.24 -13.86 10.70 84.03 0.90 -12.96 16 18 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 20 N -0.96 -59.72 11.38 21.65 0.25 -59.47 16 21 Si 0.98 46.77 29.55 68.60 2.03 48.79 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 C 0.13 5.30 7.56 86.48 0.65 5.95 16 26 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.95 6.48 -2.39 -0.02 1.93 16 28 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.15 2.84 7.70 -2.91 -0.02 2.82 16 31 H 0.41 10.88 7.73 -92.71 -0.72 10.16 16 32 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.07 1.90 7.43 -2.39 -0.02 1.88 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.00 0.02 7.96 -2.38 -0.02 0.00 16 37 H 0.04 2.28 7.16 -2.38 -0.02 2.26 16 38 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.70 8.06 -2.38 -0.02 1.68 16 Total: -1.00 -78.70 332.90 1.90 -76.80 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -0.49 Total: 19.60 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.17 Total: 7.71 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -5.74 Total: -129.47 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -78.70 1.90 -76.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969471950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.177 kcal (2) G-P(sol) polarization free energy of solvation -78.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds