Wall clock time and date at job start Mon Mar 30 2020 01:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34651 * 125.79929 * 2 1 4 4 H 0.97003 * 124.85783 * 0.02562 * 3 2 1 5 5 C 1.36452 * 110.29484 * 180.27962 * 3 2 1 6 6 C 1.34481 * 108.85742 * 359.59812 * 5 3 2 7 7 C 1.36771 * 125.79908 * 180.02562 * 2 1 3 8 8 C 1.47266 * 126.94456 * 359.97438 * 7 2 1 9 9 O 1.21623 * 119.99857 * 0.02562 * 8 7 2 10 10 N 1.34776 * 119.99884 * 179.97438 * 8 7 2 11 11 C 1.46500 * 119.99993 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46999 * 325.00125 * 11 10 8 13 13 C 1.53001 * 109.47069 * 85.00273 * 11 10 8 14 14 C 1.53003 * 109.47024 * 205.00518 * 11 10 8 15 15 C 1.53945 * 113.73704 * 161.82292 * 14 11 10 16 16 N 1.47810 * 86.03538 * 222.08034 * 15 14 11 17 17 C 1.36939 * 134.45946 * 204.64417 * 16 15 14 18 18 H 1.08003 * 119.99893 * 179.86795 * 17 16 15 19 19 C 1.38805 * 119.99986 * 359.87157 * 17 16 15 20 20 N 1.31618 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00210 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47460 * 89.99566 * 21 19 17 23 23 H 1.48507 * 109.47102 * 209.99894 * 21 19 17 24 24 H 1.48499 * 109.47108 * 329.99766 * 21 19 17 25 25 C 1.47583 * 91.04937 * 24.55026 * 16 15 14 26 26 H 1.09003 * 109.47347 * 89.96994 * 1 2 3 27 27 H 1.09002 * 109.47028 * 209.96846 * 1 2 3 28 28 H 1.08998 * 109.47089 * 329.96784 * 1 2 3 29 29 H 1.08006 * 125.56977 * 179.75762 * 5 3 2 30 30 H 1.08000 * 126.83345 * 180.14304 * 6 5 3 31 31 H 0.96998 * 119.99742 * 0.02562 * 10 8 7 32 32 H 1.08999 * 109.47231 * 180.02562 * 13 11 10 33 33 H 1.09005 * 109.46970 * 300.07680 * 13 11 10 34 34 H 1.08997 * 109.46860 * 60.07595 * 13 11 10 35 35 H 1.08996 * 112.94326 * 293.41042 * 14 11 10 36 36 H 1.09003 * 113.77255 * 336.34489 * 15 14 11 37 37 H 1.08998 * 113.76958 * 107.74518 * 15 14 11 38 38 H 0.97006 * 120.00572 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.76938 * 221.14786 * 25 16 15 40 40 H 1.09001 * 113.86954 * 89.76812 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7274 -0.0062 6 6 3.6882 -0.6151 -0.0015 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 -0.0006 9 8 0.6839 -2.7839 -0.0007 10 7 2.7850 -3.5055 -0.0016 11 6 2.3504 -4.9045 -0.0012 12 1 1.4393 -5.0018 0.5893 13 6 2.0775 -5.3543 -1.4379 14 6 3.4483 -5.7794 0.6073 15 6 2.9551 -7.1641 1.0646 16 7 3.7970 -6.9552 2.2614 17 6 4.4078 -7.7871 3.1615 18 1 4.9875 -7.3724 3.9729 19 6 4.2819 -9.1632 3.0309 20 7 3.5751 -9.6686 2.0423 21 14 5.1145 -10.2980 4.2591 22 1 4.1890 -10.5701 5.3881 23 1 5.4692 -11.5759 3.5908 24 1 6.3472 -9.6503 4.7748 25 6 3.7171 -5.4909 2.0954 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3633 0.8897 0.5143 29 1 4.4497 1.4060 -0.0114 30 1 4.5890 -1.2109 -0.0022 31 1 3.7310 -3.2914 -0.0019 32 1 1.7538 -6.3951 -1.4375 33 1 1.2963 -4.7301 -1.8718 34 1 2.9889 -5.2582 -2.0279 35 1 4.3507 -5.8144 -0.0029 36 1 1.8871 -7.2011 1.2798 37 1 3.2905 -7.9824 0.4275 38 1 3.4867 -10.6303 1.9512 39 1 4.6599 -4.9758 2.2797 40 1 2.8742 -5.0336 2.6136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969471951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:03 Heat of formation + Delta-G solvation = 54.314742 kcal Electronic energy + Delta-G solvation = -21251.713582 eV Core-core repulsion = 18068.743255 eV Total energy + Delta-G solvation = -3182.970327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31995 -39.22467 -37.74643 -34.60570 -32.18966 -31.63727 -31.40731 -29.87447 -27.38969 -26.47440 -24.73477 -24.01545 -22.66611 -21.05319 -20.43166 -19.71968 -18.61386 -17.76858 -16.73128 -15.87489 -15.73049 -15.11105 -14.72308 -14.31896 -13.87035 -13.85100 -13.69144 -13.35220 -13.10797 -12.98130 -12.81139 -12.66663 -12.18613 -11.91960 -11.66416 -11.46457 -11.30877 -11.12892 -10.82642 -10.58090 -10.25794 -9.91736 -9.72870 -9.46326 -9.30755 -8.98521 -8.73477 -8.61919 -8.25149 -6.79811 -5.70339 -3.01967 1.76325 2.32306 2.97411 3.43276 3.47790 3.49883 3.68882 3.76103 4.51244 4.70292 4.84686 5.06934 5.11753 5.24717 5.33267 5.43346 5.50739 5.51590 5.65154 5.74760 5.78655 5.87036 5.95129 6.08212 6.15870 6.22601 6.42249 6.48286 6.57505 6.64063 6.71847 6.78054 6.80724 7.01020 7.27935 7.30645 7.45867 7.63422 7.95759 8.05076 8.65295 9.11345 9.77500 10.68028 11.46987 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032262 B = 0.003488 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.696574 B = 8024.837736 C = 8417.328801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.100 3.900 3 N -0.556 5.556 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.166 4.166 7 C -0.231 4.231 8 C 0.588 3.412 9 O -0.556 6.556 10 N -0.714 5.714 11 C 0.152 3.848 12 H 0.086 0.914 13 C -0.157 4.157 14 C -0.146 4.146 15 C 0.175 3.825 16 N -0.613 5.613 17 C -0.221 4.221 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.126 3.874 26 H 0.076 0.924 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.168 0.832 30 H 0.146 0.854 31 H 0.397 0.603 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.253 0.747 39 H 0.040 0.960 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.745 22.064 -7.577 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.190 4.190 7 C -0.241 4.241 8 C 0.377 3.623 9 O -0.436 6.436 10 N -0.363 5.363 11 C 0.048 3.952 12 H 0.104 0.896 13 C -0.215 4.215 14 C -0.166 4.166 15 C 0.050 3.950 16 N -0.339 5.339 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.185 0.815 30 H 0.163 0.837 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.487 21.646 -7.426 23.019 hybrid contribution 0.883 -0.073 0.758 1.166 sum -1.604 21.573 -6.669 22.637 Atomic orbital electron populations 1.20570 0.87066 1.04197 1.03351 1.20351 0.93717 0.85661 1.01986 1.41586 1.06289 1.08311 1.58963 0.75003 1.21694 0.85609 0.96484 1.11074 1.22079 0.95974 0.93653 1.07335 1.20260 0.93141 0.92397 1.18280 1.17328 0.85465 0.83984 0.75524 1.90712 1.16703 1.84450 1.51758 1.45889 1.09475 1.06105 1.74858 1.21059 0.98640 0.78974 0.96572 0.89579 1.22104 1.01262 1.01788 0.96366 1.23826 0.97812 0.98623 0.96359 1.22228 0.93359 0.91794 0.87658 1.46004 1.57151 0.99645 1.31125 1.19033 1.23766 0.87081 1.05039 0.90362 1.24769 1.00534 0.96440 0.98803 1.69813 1.44063 1.11145 1.31875 0.86134 0.78891 0.80444 0.80384 1.21686 1.21666 1.20680 1.22524 0.97732 0.87722 0.92015 0.90581 0.87840 0.92090 0.81505 0.83675 0.76920 0.91287 0.92834 0.92907 0.89448 0.95433 0.90772 0.93693 0.94218 0.94989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.88 36.01 0.36 -0.56 16 2 C 0.10 1.10 7.17 -81.89 -0.59 0.52 16 3 N -0.56 -4.36 5.90 -9.11 -0.05 -4.42 16 4 H 0.41 1.81 8.96 -40.82 -0.37 1.44 16 5 C -0.02 -0.17 11.89 -16.82 -0.20 -0.37 16 6 C -0.17 -1.73 10.56 -37.50 -0.40 -2.13 16 7 C -0.23 -3.02 6.29 -103.35 -0.65 -3.67 16 8 C 0.59 9.22 7.77 -12.59 -0.10 9.12 16 9 O -0.56 -10.23 14.48 5.26 0.08 -10.15 16 10 N -0.71 -10.42 4.94 -54.93 -0.27 -10.69 16 11 C 0.15 2.52 2.29 -67.93 -0.16 2.36 16 12 H 0.09 1.63 7.48 -51.93 -0.39 1.24 16 13 C -0.16 -2.36 9.44 37.16 0.35 -2.01 16 14 C -0.15 -2.74 3.35 -89.70 -0.30 -3.04 16 15 C 0.18 4.19 6.98 -2.84 -0.02 4.17 16 16 N -0.61 -16.17 3.70 -177.72 -0.66 -16.83 16 17 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 18 H 0.08 2.18 7.83 -52.48 -0.41 1.76 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 20 N -0.92 -27.78 11.39 55.49 0.63 -27.15 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.13 2.66 8.38 -2.97 -0.02 2.63 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.27 6.46 -51.93 -0.34 0.93 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.17 0.81 8.06 -52.48 -0.42 0.38 16 30 H 0.15 1.28 7.70 -52.49 -0.40 0.87 16 31 H 0.40 4.97 7.72 -40.82 -0.32 4.65 16 32 H 0.07 1.05 8.09 -51.93 -0.42 0.63 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 36 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 37 H 0.07 1.93 7.17 -51.93 -0.37 1.56 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -34.77 334.25 -8.19 -42.95 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.94 Total: 3.62 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.98 Total: 0.11 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.35 Total: -59.09 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.77 -8.19 -42.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969471951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.269 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds