Wall clock time and date at job start Mon Mar 30 2020 01:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34651 * 125.79929 * 2 1 4 4 H 0.97003 * 124.85783 * 0.02562 * 3 2 1 5 5 C 1.36452 * 110.29484 * 180.27962 * 3 2 1 6 6 C 1.34481 * 108.85742 * 359.59812 * 5 3 2 7 7 C 1.36771 * 125.79908 * 180.02562 * 2 1 3 8 8 C 1.47266 * 126.94456 * 359.97438 * 7 2 1 9 9 O 1.21623 * 119.99857 * 0.02562 * 8 7 2 10 10 N 1.34776 * 119.99884 * 179.97438 * 8 7 2 11 11 C 1.46500 * 119.99993 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46999 * 325.00125 * 11 10 8 13 13 C 1.53001 * 109.47069 * 85.00273 * 11 10 8 14 14 C 1.53003 * 109.47024 * 205.00518 * 11 10 8 15 15 C 1.53945 * 113.73704 * 161.82292 * 14 11 10 16 16 N 1.47810 * 86.03538 * 222.08034 * 15 14 11 17 17 C 1.36939 * 134.45946 * 204.64417 * 16 15 14 18 18 H 1.08003 * 119.99893 * 179.86795 * 17 16 15 19 19 C 1.38805 * 119.99986 * 359.87157 * 17 16 15 20 20 N 1.31618 * 119.99914 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00210 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47460 * 89.99566 * 21 19 17 23 23 H 1.48507 * 109.47102 * 209.99894 * 21 19 17 24 24 H 1.48499 * 109.47108 * 329.99766 * 21 19 17 25 25 C 1.47583 * 91.04937 * 24.55026 * 16 15 14 26 26 H 1.09003 * 109.47347 * 89.96994 * 1 2 3 27 27 H 1.09002 * 109.47028 * 209.96846 * 1 2 3 28 28 H 1.08998 * 109.47089 * 329.96784 * 1 2 3 29 29 H 1.08006 * 125.56977 * 179.75762 * 5 3 2 30 30 H 1.08000 * 126.83345 * 180.14304 * 6 5 3 31 31 H 0.96998 * 119.99742 * 0.02562 * 10 8 7 32 32 H 1.08999 * 109.47231 * 180.02562 * 13 11 10 33 33 H 1.09005 * 109.46970 * 300.07680 * 13 11 10 34 34 H 1.08997 * 109.46860 * 60.07595 * 13 11 10 35 35 H 1.08996 * 112.94326 * 293.41042 * 14 11 10 36 36 H 1.09003 * 113.77255 * 336.34489 * 15 14 11 37 37 H 1.08998 * 113.76958 * 107.74518 * 15 14 11 38 38 H 0.97006 * 120.00572 * 180.02562 * 20 19 17 39 39 H 1.09001 * 113.76938 * 221.14786 * 25 16 15 40 40 H 1.09001 * 113.86954 * 89.76812 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7274 -0.0062 6 6 3.6882 -0.6151 -0.0015 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5157 -0.0006 9 8 0.6839 -2.7839 -0.0007 10 7 2.7850 -3.5055 -0.0016 11 6 2.3504 -4.9045 -0.0012 12 1 1.4393 -5.0018 0.5893 13 6 2.0775 -5.3543 -1.4379 14 6 3.4483 -5.7794 0.6073 15 6 2.9551 -7.1641 1.0646 16 7 3.7970 -6.9552 2.2614 17 6 4.4078 -7.7871 3.1615 18 1 4.9875 -7.3724 3.9729 19 6 4.2819 -9.1632 3.0309 20 7 3.5751 -9.6686 2.0423 21 14 5.1145 -10.2980 4.2591 22 1 4.1890 -10.5701 5.3881 23 1 5.4692 -11.5759 3.5908 24 1 6.3472 -9.6503 4.7748 25 6 3.7171 -5.4909 2.0954 26 1 -0.3634 0.0005 -1.0277 27 1 -0.3633 -0.8903 0.5134 28 1 -0.3633 0.8897 0.5143 29 1 4.4497 1.4060 -0.0114 30 1 4.5890 -1.2109 -0.0022 31 1 3.7310 -3.2914 -0.0019 32 1 1.7538 -6.3951 -1.4375 33 1 1.2963 -4.7301 -1.8718 34 1 2.9889 -5.2582 -2.0279 35 1 4.3507 -5.8144 -0.0029 36 1 1.8871 -7.2011 1.2798 37 1 3.2905 -7.9824 0.4275 38 1 3.4867 -10.6303 1.9512 39 1 4.6599 -4.9758 2.2797 40 1 2.8742 -5.0336 2.6136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969471951.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:02 Heat of formation + Delta-G solvation = 30.299713 kcal Electronic energy + Delta-G solvation = -21252.754952 eV Core-core repulsion = 18068.743255 eV Total energy + Delta-G solvation = -3184.011696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.09420 -40.60513 -39.32296 -36.07046 -34.13262 -32.58278 -32.36911 -31.03890 -29.30465 -27.29975 -26.50627 -25.71140 -23.98082 -22.26394 -21.43071 -21.09468 -20.00090 -18.75283 -18.51270 -17.18166 -16.99758 -16.70840 -16.06176 -15.81711 -15.39313 -15.06814 -14.86841 -14.57561 -14.30229 -14.00413 -13.93381 -13.54980 -13.38291 -13.33162 -13.23692 -13.06216 -12.93317 -12.65286 -12.42461 -12.33120 -11.98974 -11.77734 -11.53153 -11.19894 -10.85572 -10.72001 -10.00903 -9.64609 -9.04314 -8.90988 -7.89145 -5.22986 0.83177 1.45892 1.48529 1.57096 1.61825 2.20273 2.48418 2.62358 2.67887 3.30757 3.41174 3.76010 3.98256 4.01022 4.16805 4.31471 4.34838 4.40178 4.50042 4.60152 4.72160 4.76242 4.79118 4.88054 4.89340 4.97929 5.04216 5.10529 5.15436 5.26009 5.32526 5.37323 5.54787 5.65287 5.70708 5.86723 5.94990 6.05230 6.70251 6.84222 6.93048 7.48921 7.61619 8.58113 9.27913 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032262 B = 0.003488 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.696574 B = 8024.837736 C = 8417.328801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.095 3.905 3 N -0.539 5.539 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.188 4.188 7 C -0.269 4.269 8 C 0.583 3.417 9 O -0.594 6.594 10 N -0.706 5.706 11 C 0.164 3.836 12 H 0.058 0.942 13 C -0.149 4.149 14 C -0.108 4.108 15 C 0.171 3.829 16 N -0.643 5.643 17 C -0.238 4.238 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.981 3.019 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.128 3.872 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.207 0.793 30 H 0.157 0.843 31 H 0.409 0.591 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.011 0.989 37 H 0.048 0.952 38 H 0.249 0.751 39 H 0.061 0.939 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 24.712 -7.669 25.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 N -0.136 5.136 4 H 0.272 0.728 5 C -0.131 4.131 6 C -0.211 4.211 7 C -0.279 4.279 8 C 0.374 3.626 9 O -0.477 6.477 10 N -0.356 5.356 11 C 0.058 3.942 12 H 0.076 0.924 13 C -0.208 4.208 14 C -0.128 4.128 15 C 0.045 3.955 16 N -0.370 5.370 17 C -0.367 4.367 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.191 1.191 25 C 0.004 3.996 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.224 0.776 30 H 0.175 0.825 31 H 0.246 0.754 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.028 0.972 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.796 24.367 -7.518 25.513 hybrid contribution 0.337 -0.783 0.798 1.168 sum -0.459 23.584 -6.720 24.527 Atomic orbital electron populations 1.20518 0.86689 1.04112 1.03623 1.20473 0.94270 0.86219 1.01460 1.41596 1.06049 1.08609 1.57350 0.72751 1.22296 0.86369 0.96292 1.08106 1.22312 0.95151 0.94949 1.08704 1.20248 0.95244 0.91241 1.21197 1.17807 0.84950 0.85250 0.74637 1.90689 1.18244 1.85172 1.53549 1.45694 1.10151 1.04946 1.74796 1.20704 0.96495 0.80022 0.96930 0.92375 1.22026 1.02099 1.01277 0.95377 1.23437 0.98497 0.95364 0.95512 1.22130 0.92174 0.93963 0.87204 1.46430 1.57302 1.01899 1.31346 1.19459 1.23773 0.87954 1.05482 0.89897 1.25653 1.01630 0.97991 1.00807 1.70008 1.45598 1.10994 1.33629 0.85051 0.78237 0.78040 0.77830 1.21593 1.21848 1.19066 1.22641 0.98507 0.85231 0.93263 0.90118 0.90928 0.89111 0.77597 0.82526 0.75446 0.91831 0.93083 0.90962 0.87734 0.97157 0.93408 0.94219 0.92111 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.88 71.24 0.70 -1.00 16 2 C 0.10 1.94 7.17 41.78 0.30 2.24 16 3 N -0.54 -6.67 5.90 -182.72 -1.08 -7.75 16 4 H 0.43 2.08 8.96 -92.71 -0.83 1.25 16 5 C 0.00 -0.04 11.89 83.11 0.99 0.95 16 6 C -0.19 -3.45 10.56 23.62 0.25 -3.20 16 7 C -0.27 -6.77 6.29 -19.04 -0.12 -6.89 16 8 C 0.58 18.35 7.77 86.62 0.67 19.03 16 9 O -0.59 -22.63 14.48 -4.11 -0.06 -22.69 16 10 N -0.71 -20.21 4.94 -445.94 -2.20 -22.41 16 11 C 0.16 5.45 2.29 44.99 0.10 5.55 16 12 H 0.06 2.29 7.48 -2.39 -0.02 2.27 16 13 C -0.15 -4.47 9.44 71.98 0.68 -3.79 16 14 C -0.11 -4.03 3.35 -10.14 -0.03 -4.06 16 15 C 0.17 8.44 6.98 86.44 0.60 9.04 16 16 N -0.64 -34.36 3.70 -716.18 -2.65 -37.01 16 17 C -0.24 -13.83 10.70 84.03 0.90 -12.93 16 18 H 0.08 4.59 7.83 -2.91 -0.02 4.56 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 20 N -0.95 -58.93 11.39 21.65 0.25 -58.68 16 21 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 25 C 0.13 5.36 8.38 86.48 0.72 6.09 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 30 H 0.16 2.35 7.70 -2.91 -0.02 2.33 16 31 H 0.41 9.61 7.72 -92.71 -0.72 8.89 16 32 H 0.06 1.96 8.09 -2.39 -0.02 1.94 16 33 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.01 0.55 8.03 -2.39 -0.02 0.53 16 37 H 0.05 2.59 7.17 -2.39 -0.02 2.57 16 38 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.03 1.24 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -77.56 334.25 2.03 -75.53 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -0.49 Total: 16.76 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.24 Total: 7.52 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -5.69 Total: -125.85 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.06 Total: -22.69 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.56 2.03 -75.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969471951.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.833 kcal (2) G-P(sol) polarization free energy of solvation -77.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds