Wall clock time and date at job start Mon Mar 30 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34483 * 125.56821 * 2 1 4 4 C 1.46688 * 106.33204 * 180.02562 * 3 2 1 5 5 C 1.47263 * 126.94094 * 180.02562 * 4 3 2 6 6 O 1.21631 * 119.99351 * 204.31499 * 5 4 3 7 7 N 1.34770 * 120.00219 * 24.31729 * 5 4 3 8 8 C 1.47425 * 125.64977 * 5.20817 * 7 5 4 9 9 C 1.55125 * 104.72219 * 155.81943 * 8 7 5 10 10 C 1.55160 * 101.49035 * 37.29475 * 9 8 7 11 11 H 1.09003 * 110.71847 * 82.69215 * 10 9 8 12 12 N 1.46493 * 110.72348 * 205.97039 * 10 9 8 13 13 C 1.36946 * 119.99944 * 199.97602 * 12 10 9 14 14 H 1.08002 * 119.99456 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99983 * 180.02562 * 13 12 10 16 16 N 1.31613 * 119.99813 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99899 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46653 * 90.00489 * 17 15 13 19 19 H 1.48502 * 109.46955 * 209.99931 * 17 15 13 20 20 H 1.48501 * 109.47560 * 330.00142 * 17 15 13 21 21 C 1.47026 * 125.64884 * 185.51907 * 7 5 4 22 22 C 1.36767 * 106.11783 * 0.02562 * 4 3 2 23 23 C 1.50696 * 125.80786 * 179.73114 * 22 4 3 24 24 N 1.34660 * 108.39316 * 0.02562 * 22 4 3 25 25 H 0.96999 * 124.85280 * 179.97438 * 24 22 4 26 26 H 1.08999 * 109.47401 * 89.99558 * 1 2 3 27 27 H 1.09005 * 109.47098 * 209.99142 * 1 2 3 28 28 H 1.08998 * 109.47413 * 329.99276 * 1 2 3 29 29 H 1.08005 * 126.83588 * 0.02562 * 3 2 1 30 30 H 1.08995 * 110.36936 * 274.74852 * 8 7 5 31 31 H 1.09000 * 110.36563 * 37.07019 * 8 7 5 32 32 H 1.08999 * 111.19399 * 279.19231 * 9 8 7 33 33 H 1.08996 * 110.90808 * 155.27793 * 9 8 7 34 34 H 0.96994 * 120.00508 * 19.97621 * 12 10 9 35 35 H 0.97000 * 120.00282 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.88482 * 300.44133 * 21 7 5 37 37 H 1.09002 * 109.88187 * 61.44746 * 21 7 5 38 38 H 1.09009 * 109.46836 * 90.00131 * 23 22 4 39 39 H 1.08994 * 109.47876 * 210.00524 * 23 22 4 40 40 H 1.09003 * 109.46850 * 330.01195 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2892 1.0939 0.0000 4 6 3.6742 0.6106 -0.0006 5 6 4.8976 1.4303 -0.0003 6 8 5.9370 0.9716 -0.4346 7 7 4.8656 2.6887 0.4811 8 6 3.7092 3.3301 1.1330 9 6 4.3246 4.4432 2.0210 10 6 5.4893 4.9438 1.1264 11 1 5.1285 5.6612 0.3893 12 7 6.5555 5.5290 1.9429 13 6 7.4638 6.3816 1.3741 14 1 7.3938 6.6228 0.3237 15 6 8.4745 6.9358 2.1477 16 7 9.3477 7.7548 1.6009 17 14 8.5950 6.5191 3.9646 18 1 9.4558 5.3221 4.1418 19 1 9.1868 7.6672 4.6975 20 1 7.2385 6.2369 4.4989 21 6 5.9760 3.6514 0.4376 22 6 3.5998 -0.7550 -0.0015 23 6 4.7722 -1.7019 -0.0082 24 7 2.3008 -1.1098 -0.0021 25 1 1.9758 -2.0237 -0.0031 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3634 0.8899 0.5139 29 1 1.9627 2.1234 0.0004 30 1 3.0439 3.7623 0.3856 31 1 3.1720 2.6082 1.7481 32 1 4.7003 4.0358 2.9596 33 1 3.6024 5.2389 2.2036 34 1 6.6182 5.3127 2.8863 35 1 10.0537 8.1424 2.1415 36 1 6.8370 3.2487 0.9710 37 1 6.2458 3.8594 -0.5979 38 1 5.0598 -1.9311 1.0180 39 1 4.4933 -2.6220 -0.5215 40 1 5.6115 -1.2372 -0.5255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970112159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:17 Heat of formation + Delta-G solvation = 23.148855 kcal Electronic energy + Delta-G solvation = -21375.169617 eV Core-core repulsion = 18190.847836 eV Total energy + Delta-G solvation = -3184.321781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.44405 -39.25013 -37.10309 -34.19095 -32.79496 -31.80821 -30.99215 -29.78835 -29.32163 -27.72801 -25.26787 -23.77628 -22.42800 -21.60311 -20.54720 -19.90636 -18.43390 -17.51399 -17.06413 -16.09258 -15.83541 -15.16939 -14.91521 -14.43988 -13.88178 -13.80959 -13.64670 -13.43942 -13.30508 -13.00471 -12.75507 -12.63085 -12.51173 -12.32775 -12.26196 -12.01766 -11.65985 -11.56888 -11.18181 -10.84149 -10.69500 -10.44074 -10.03778 -9.60583 -9.54705 -8.97107 -8.88652 -8.27600 -8.02741 -7.33337 -5.78117 -3.15595 1.79868 2.27823 2.92965 3.37610 3.41050 3.44939 3.48073 3.66963 4.58383 4.59425 4.73028 4.89198 4.92708 4.96898 5.10564 5.20329 5.22709 5.36385 5.42244 5.49102 5.54943 5.56606 5.65258 5.76014 5.78732 5.87656 5.93961 5.95959 6.14419 6.27802 6.36109 6.57042 6.66372 6.75841 6.86400 6.91695 7.30624 7.96159 7.97204 8.40739 8.61259 9.17657 9.89779 10.08079 11.39792 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.003860 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.918460 B = 7252.041071 C = 7657.053675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.004 3.996 3 C -0.164 4.164 4 C -0.221 4.221 5 C 0.600 3.400 6 O -0.553 6.553 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.145 4.145 10 C 0.177 3.823 11 H 0.073 0.927 12 N -0.738 5.738 13 C -0.251 4.251 14 H 0.093 0.907 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.276 1.276 21 C 0.086 3.914 22 C 0.097 3.903 23 C -0.098 4.098 24 N -0.551 5.551 25 H 0.412 0.588 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.364 0.636 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.399 -18.177 -1.166 27.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.188 4.188 4 C -0.231 4.231 5 C 0.390 3.610 6 O -0.433 6.433 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.184 4.184 10 C 0.066 3.934 11 H 0.091 0.909 12 N -0.380 5.380 13 C -0.380 4.380 14 H 0.110 0.890 15 C -0.188 4.188 16 N -0.578 5.578 17 Si 0.714 3.286 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.203 1.203 21 C -0.039 4.039 22 C -0.020 4.020 23 C -0.156 4.156 24 N -0.148 5.148 25 H 0.248 0.752 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.197 0.803 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.748 -18.393 -1.572 27.033 hybrid contribution 0.018 -0.611 1.286 1.424 sum -19.731 -19.004 -0.286 27.396 Atomic orbital electron populations 1.20306 0.87835 1.03238 1.02626 1.20204 0.93380 0.86040 1.10838 1.21986 0.90728 0.97875 1.08175 1.20132 0.93113 0.92108 1.17729 1.17035 0.86953 0.79820 0.77179 1.90726 1.32472 1.71432 1.48679 1.48303 1.15282 1.12202 1.58422 1.22418 0.88993 0.94950 0.95324 1.23153 0.98890 0.97626 0.98744 1.21175 0.87752 0.91719 0.92798 0.90896 1.42714 1.32659 1.54793 1.07806 1.19097 1.04409 1.18411 0.96115 0.88964 1.24676 0.97452 0.99055 0.97618 1.69699 1.18054 1.34651 1.35354 0.86562 0.77588 0.77737 0.86717 1.20979 1.21666 1.20255 1.23073 0.89508 0.89838 1.01527 1.20234 0.84775 0.94196 1.02772 1.20597 0.95075 0.96618 1.03285 1.41486 1.05308 1.08611 1.59384 0.75205 0.91109 0.91930 0.89980 0.83501 0.91596 0.90678 0.90851 0.89927 0.80282 0.92963 0.91050 0.92085 0.90752 0.91830 0.87688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.41 36.01 0.37 -0.09 16 2 C 0.00 0.04 7.13 -81.87 -0.58 -0.54 16 3 C -0.16 -1.88 9.09 -37.50 -0.34 -2.22 16 4 C -0.22 -3.17 5.89 -103.35 -0.61 -3.78 16 5 C 0.60 10.67 7.74 -12.60 -0.10 10.57 16 6 O -0.55 -11.54 15.40 5.25 0.08 -11.46 16 7 N -0.61 -10.31 3.32 -171.71 -0.57 -10.88 16 8 C 0.11 1.41 5.24 -2.41 -0.01 1.39 16 9 C -0.15 -2.13 6.71 -24.46 -0.16 -2.29 16 10 C 0.18 3.35 3.59 -66.10 -0.24 3.12 16 11 H 0.07 1.39 8.12 -51.93 -0.42 0.96 16 12 N -0.74 -17.27 4.98 -51.65 -0.26 -17.53 16 13 C -0.25 -7.02 10.46 -15.06 -0.16 -7.18 16 14 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 15 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 16 N -0.93 -29.24 13.97 55.49 0.78 -28.47 16 17 Si 0.88 22.08 27.73 -169.99 -4.71 17.36 16 18 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 21 C 0.09 1.67 6.62 -3.06 -0.02 1.65 16 22 C 0.10 1.16 7.17 -81.89 -0.59 0.57 16 23 C -0.10 -1.03 10.13 36.00 0.36 -0.67 16 24 N -0.55 -4.86 5.90 -5.43 -0.03 -4.90 16 25 H 0.41 2.22 8.96 -40.82 -0.37 1.86 16 26 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.15 1.49 6.18 -52.48 -0.32 1.16 16 30 H 0.07 0.75 7.34 -51.93 -0.38 0.37 16 31 H 0.07 0.89 6.91 -51.93 -0.36 0.53 16 32 H 0.07 1.10 8.00 -51.93 -0.42 0.69 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.36 8.37 5.58 -40.82 -0.23 8.14 16 35 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 36 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 1.39 6.34 -51.93 -0.33 1.06 16 LS Contribution 326.55 15.07 4.92 4.92 Total: -1.00 -34.96 326.55 -7.75 -42.72 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.79 Total: 7.56 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.17 Total: 0.67 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.09 Total: -61.77 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.96 -7.75 -42.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970112159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.864 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds