Wall clock time and date at job start Mon Mar 30 2020 01:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34483 * 125.56821 * 2 1 4 4 C 1.46688 * 106.33204 * 180.02562 * 3 2 1 5 5 C 1.47263 * 126.94094 * 180.02562 * 4 3 2 6 6 O 1.21631 * 119.99351 * 204.31499 * 5 4 3 7 7 N 1.34770 * 120.00219 * 24.31729 * 5 4 3 8 8 C 1.47425 * 125.64977 * 5.20817 * 7 5 4 9 9 C 1.55125 * 104.72219 * 155.81943 * 8 7 5 10 10 C 1.55160 * 101.49035 * 37.29475 * 9 8 7 11 11 H 1.09003 * 110.71847 * 82.69215 * 10 9 8 12 12 N 1.46493 * 110.72348 * 205.97039 * 10 9 8 13 13 C 1.36946 * 119.99944 * 199.97602 * 12 10 9 14 14 H 1.08002 * 119.99456 * 0.02562 * 13 12 10 15 15 C 1.38812 * 119.99983 * 180.02562 * 13 12 10 16 16 N 1.31613 * 119.99813 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99899 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46653 * 90.00489 * 17 15 13 19 19 H 1.48502 * 109.46955 * 209.99931 * 17 15 13 20 20 H 1.48501 * 109.47560 * 330.00142 * 17 15 13 21 21 C 1.47026 * 125.64884 * 185.51907 * 7 5 4 22 22 C 1.36767 * 106.11783 * 0.02562 * 4 3 2 23 23 C 1.50696 * 125.80786 * 179.73114 * 22 4 3 24 24 N 1.34660 * 108.39316 * 0.02562 * 22 4 3 25 25 H 0.96999 * 124.85280 * 179.97438 * 24 22 4 26 26 H 1.08999 * 109.47401 * 89.99558 * 1 2 3 27 27 H 1.09005 * 109.47098 * 209.99142 * 1 2 3 28 28 H 1.08998 * 109.47413 * 329.99276 * 1 2 3 29 29 H 1.08005 * 126.83588 * 0.02562 * 3 2 1 30 30 H 1.08995 * 110.36936 * 274.74852 * 8 7 5 31 31 H 1.09000 * 110.36563 * 37.07019 * 8 7 5 32 32 H 1.08999 * 111.19399 * 279.19231 * 9 8 7 33 33 H 1.08996 * 110.90808 * 155.27793 * 9 8 7 34 34 H 0.96994 * 120.00508 * 19.97621 * 12 10 9 35 35 H 0.97000 * 120.00282 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.88482 * 300.44133 * 21 7 5 37 37 H 1.09002 * 109.88187 * 61.44746 * 21 7 5 38 38 H 1.09009 * 109.46836 * 90.00131 * 23 22 4 39 39 H 1.08994 * 109.47876 * 210.00524 * 23 22 4 40 40 H 1.09003 * 109.46850 * 330.01195 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2892 1.0939 0.0000 4 6 3.6742 0.6106 -0.0006 5 6 4.8976 1.4303 -0.0003 6 8 5.9370 0.9716 -0.4346 7 7 4.8656 2.6887 0.4811 8 6 3.7092 3.3301 1.1330 9 6 4.3246 4.4432 2.0210 10 6 5.4893 4.9438 1.1264 11 1 5.1285 5.6612 0.3893 12 7 6.5555 5.5290 1.9429 13 6 7.4638 6.3816 1.3741 14 1 7.3938 6.6228 0.3237 15 6 8.4745 6.9358 2.1477 16 7 9.3477 7.7548 1.6009 17 14 8.5950 6.5191 3.9646 18 1 9.4558 5.3221 4.1418 19 1 9.1868 7.6672 4.6975 20 1 7.2385 6.2369 4.4989 21 6 5.9760 3.6514 0.4376 22 6 3.5998 -0.7550 -0.0015 23 6 4.7722 -1.7019 -0.0082 24 7 2.3008 -1.1098 -0.0021 25 1 1.9758 -2.0237 -0.0031 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3633 -0.8901 0.5137 28 1 -0.3634 0.8899 0.5139 29 1 1.9627 2.1234 0.0004 30 1 3.0439 3.7623 0.3856 31 1 3.1720 2.6082 1.7481 32 1 4.7003 4.0358 2.9596 33 1 3.6024 5.2389 2.2036 34 1 6.6182 5.3127 2.8863 35 1 10.0537 8.1424 2.1415 36 1 6.8370 3.2487 0.9710 37 1 6.2458 3.8594 -0.5979 38 1 5.0598 -1.9311 1.0180 39 1 4.4933 -2.6220 -0.5215 40 1 5.6115 -1.2372 -0.5255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970112159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:17 Heat of formation + Delta-G solvation = -2.052369 kcal Electronic energy + Delta-G solvation = -21376.262424 eV Core-core repulsion = 18190.847836 eV Total energy + Delta-G solvation = -3185.414588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30293 -40.58078 -38.57367 -36.02065 -33.65379 -33.49658 -32.18910 -31.21079 -30.00467 -29.22464 -26.43831 -25.24707 -23.89112 -22.74842 -21.57085 -21.25133 -19.95170 -19.24984 -18.04187 -17.50432 -16.92554 -16.47072 -16.25373 -15.90122 -15.44917 -15.01182 -14.78484 -14.60142 -14.35994 -14.11543 -14.05512 -13.81376 -13.67708 -13.47713 -13.19046 -12.99521 -12.97953 -12.87296 -12.48145 -12.37986 -12.28427 -12.12983 -11.84196 -11.56332 -11.08154 -10.88868 -9.82469 -9.57129 -9.39824 -8.91061 -8.03817 -5.39635 0.76803 1.37468 1.42219 1.48074 1.48687 1.98973 2.37824 2.46007 2.47854 3.25851 3.53003 3.70445 3.78701 3.89702 4.04436 4.24834 4.27429 4.32502 4.37696 4.48730 4.53575 4.64755 4.68187 4.74286 4.88134 4.90203 4.92862 5.01366 5.06409 5.15521 5.21352 5.26741 5.35034 5.42435 5.75838 5.84292 6.03898 6.20144 6.63002 6.70191 7.04777 7.27166 7.78691 7.98093 9.17417 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029719 B = 0.003860 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.918460 B = 7252.041071 C = 7657.053675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.021 3.979 3 C -0.182 4.182 4 C -0.259 4.259 5 C 0.590 3.410 6 O -0.601 6.601 7 N -0.611 5.611 8 C 0.111 3.889 9 C -0.131 4.131 10 C 0.170 3.830 11 H 0.072 0.928 12 N -0.740 5.740 13 C -0.238 4.238 14 H 0.058 0.942 15 C -0.062 4.062 16 N -0.982 5.982 17 Si 0.955 3.045 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.244 1.244 21 C 0.095 3.905 22 C 0.096 3.904 23 C -0.096 4.096 24 N -0.534 5.534 25 H 0.431 0.569 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.159 0.841 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.369 0.631 35 H 0.259 0.741 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.505 -20.108 0.526 31.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.206 4.206 4 C -0.269 4.269 5 C 0.383 3.617 6 O -0.484 6.484 7 N -0.343 5.343 8 C -0.011 4.011 9 C -0.169 4.169 10 C 0.060 3.940 11 H 0.090 0.910 12 N -0.382 5.382 13 C -0.369 4.369 14 H 0.076 0.924 15 C -0.253 4.253 16 N -0.632 5.632 17 Si 0.782 3.218 18 H -0.212 1.212 19 H -0.220 1.220 20 H -0.168 1.168 21 C -0.032 4.032 22 C -0.023 4.023 23 C -0.154 4.154 24 N -0.132 5.132 25 H 0.271 0.729 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.177 0.823 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.203 0.797 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.960 -20.369 0.126 31.449 hybrid contribution 1.232 -0.097 0.616 1.381 sum -22.729 -20.467 0.742 30.595 Atomic orbital electron populations 1.20447 0.84766 1.04815 1.03786 1.20761 0.95007 0.85204 1.07887 1.22144 0.89392 0.99343 1.09681 1.20028 0.92851 0.92982 1.21018 1.17720 0.87731 0.79996 0.76251 1.90689 1.34543 1.72436 1.50740 1.48363 1.15503 1.11855 1.58619 1.22650 0.87881 0.94754 0.95774 1.23127 0.97263 0.98701 0.97850 1.21363 0.88167 0.90895 0.93552 0.90964 1.42668 1.32930 1.54269 1.08354 1.19051 1.04974 1.18048 0.94780 0.92413 1.25528 0.97346 0.99533 1.02912 1.69884 1.19231 1.36734 1.37363 0.85417 0.79003 0.76961 0.80461 1.21190 1.21953 1.16775 1.22688 0.89826 0.90910 0.99726 1.20334 0.86281 0.93695 1.02004 1.20552 0.93730 0.97423 1.03666 1.41484 1.04102 1.09825 1.57807 0.72948 0.90036 0.89970 0.88852 0.82333 0.89076 0.88364 0.90797 0.86906 0.79718 0.93255 0.94313 0.94334 0.90086 0.88609 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.41 71.24 0.74 0.23 16 2 C 0.02 0.31 7.13 40.98 0.29 0.60 16 3 C -0.18 -3.68 9.09 23.62 0.21 -3.47 16 4 C -0.26 -7.18 5.89 -19.04 -0.11 -7.29 16 5 C 0.59 21.50 7.74 86.62 0.67 22.17 16 6 O -0.60 -26.60 15.40 -4.13 -0.06 -26.67 16 7 N -0.61 -20.74 3.32 -815.41 -2.71 -23.45 16 8 C 0.11 2.64 5.24 86.93 0.46 3.10 16 9 C -0.13 -3.47 6.71 32.06 0.22 -3.26 16 10 C 0.17 6.41 3.59 46.18 0.17 6.58 16 11 H 0.07 2.75 8.12 -2.39 -0.02 2.73 16 12 N -0.74 -34.57 4.98 -317.33 -1.58 -36.15 16 13 C -0.24 -13.70 10.46 84.03 0.88 -12.82 16 14 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 15 C -0.06 -3.68 5.50 84.86 0.47 -3.21 16 16 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 17 Si 0.95 45.85 27.73 68.60 1.90 47.75 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.24 -10.27 6.52 99.48 0.65 -9.63 16 21 C 0.09 3.85 6.62 86.73 0.57 4.42 16 22 C 0.10 2.14 7.17 41.78 0.30 2.44 16 23 C -0.10 -1.95 10.13 71.23 0.72 -1.23 16 24 N -0.53 -7.62 5.90 -171.08 -1.01 -8.63 16 25 H 0.43 2.88 8.96 -92.71 -0.83 2.05 16 26 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.16 2.67 6.18 -2.91 -0.02 2.65 16 30 H 0.09 1.76 7.34 -2.39 -0.02 1.74 16 31 H 0.10 1.97 6.91 -2.39 -0.02 1.95 16 32 H 0.07 1.99 8.00 -2.39 -0.02 1.97 16 33 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.37 16.40 5.58 -92.71 -0.52 15.89 16 35 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 36 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.98 6.34 -2.39 -0.02 1.96 16 Total: -1.00 -81.26 326.55 2.09 -79.18 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.34 Total: 23.31 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.59 Total: 8.26 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -5.00 Total: -131.83 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.06 Total: -26.67 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Total: -81.26 2.09 -79.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970112159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.127 kcal (2) G-P(sol) polarization free energy of solvation -81.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds