Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34488 * 126.83535 * 2 1 4 4 N 1.36448 * 108.85682 * 180.26694 * 3 2 1 5 5 H 0.96998 * 124.85050 * 179.68860 * 4 3 2 6 6 C 1.34656 * 110.29839 * 359.71638 * 4 3 2 7 7 C 1.36770 * 108.39524 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.94229 * 179.97438 * 7 6 4 9 9 O 1.21626 * 119.99999 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99912 * 0.02932 * 8 7 6 11 11 C 1.46494 * 119.99891 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47269 * 324.99881 * 11 10 8 13 13 C 1.53003 * 109.47388 * 84.99712 * 11 10 8 14 14 C 1.52997 * 109.47346 * 204.99515 * 11 10 8 15 15 C 1.53493 * 114.21093 * 180.02562 * 14 11 10 16 16 N 1.47063 * 87.98878 * 87.52231 * 15 14 11 17 17 C 1.36937 * 136.06294 * 207.09193 * 16 15 14 18 18 H 1.08002 * 119.99154 * 8.42658 * 17 16 15 19 19 C 1.38809 * 120.00444 * 188.43562 * 17 16 15 20 20 N 1.31615 * 120.00184 * 174.84707 * 19 17 16 21 21 Si 1.86804 * 119.99817 * 354.84535 * 19 17 16 22 22 H 1.48500 * 109.46921 * 174.85685 * 21 19 17 23 23 H 1.48499 * 109.46931 * 294.85807 * 21 19 17 24 24 H 1.48497 * 109.47301 * 54.85270 * 21 19 17 25 25 C 1.47077 * 87.88326 * 27.34112 * 16 15 14 26 26 H 1.08997 * 109.47112 * 270.20034 * 1 2 3 27 27 H 1.09004 * 109.47159 * 30.19352 * 1 2 3 28 28 H 1.08995 * 109.47611 * 150.19773 * 1 2 3 29 29 H 1.08008 * 125.57241 * 359.97438 * 3 2 1 30 30 H 1.08000 * 125.80640 * 180.02562 * 6 4 3 31 31 H 0.96998 * 120.00081 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47114 * 180.02562 * 13 11 10 33 33 H 1.08997 * 109.46839 * 300.00194 * 13 11 10 34 34 H 1.09001 * 109.47234 * 60.00090 * 13 11 10 35 35 H 1.09006 * 113.40935 * 46.79695 * 14 11 10 36 36 H 1.08997 * 113.46804 * 332.73869 * 15 14 11 37 37 H 1.09009 * 113.52158 * 202.31079 * 15 14 11 38 38 H 0.97003 * 120.00032 * 357.02883 * 20 19 17 39 39 H 1.09000 * 113.46243 * 87.44347 * 25 16 15 40 40 H 1.08997 * 113.46338 * 217.88020 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0060 5 1 4.3840 1.2413 -0.0116 6 6 3.6656 -0.6902 -0.0037 7 6 2.3864 -1.1740 0.0045 8 6 1.9749 -2.5880 0.0091 9 8 0.7936 -2.8776 0.0160 10 7 2.9073 -3.5612 0.0057 11 6 2.4979 -4.9678 0.0108 12 1 1.5915 -5.0803 0.6056 13 6 2.2265 -5.4252 -1.4238 14 6 3.6142 -5.8216 0.6156 15 6 3.2976 -7.3225 0.6734 16 7 3.8400 -7.4365 -0.6888 17 6 3.6467 -8.2662 -1.7609 18 1 2.8442 -8.9888 -1.7466 19 6 4.4822 -8.1786 -2.8660 20 7 4.3616 -9.0417 -3.8523 21 14 5.7778 -6.8357 -2.9532 22 1 6.6144 -7.0329 -4.1641 23 1 5.1125 -5.5098 -3.0216 24 1 6.6362 -6.8967 -1.7430 25 6 4.6862 -6.2711 -0.3908 26 1 -0.3633 0.0036 1.0276 27 1 -0.3634 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5107 29 1 1.9868 2.1060 -0.0004 30 1 4.5664 -1.2861 -0.0069 31 1 3.8494 -3.3303 -0.0002 32 1 1.9214 -6.4717 -1.4199 33 1 1.4313 -4.8169 -1.8547 34 1 3.1329 -5.3128 -2.0187 35 1 4.0177 -5.4137 1.5424 36 1 2.2312 -7.5391 0.7355 37 1 3.8812 -7.8618 1.4195 38 1 3.7183 -9.7649 -3.7880 39 1 5.6364 -6.5324 0.0749 40 1 4.8027 -5.5920 -1.2354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970873901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = 74.112391 kcal Electronic energy + Delta-G solvation = -21812.797350 eV Core-core repulsion = 18630.685514 eV Total energy + Delta-G solvation = -3182.111836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27483 -39.68862 -38.26793 -34.44099 -32.48980 -32.36975 -30.80251 -28.84323 -27.91472 -26.62020 -25.39474 -24.15447 -22.75954 -20.99770 -19.84486 -19.51838 -18.65046 -18.24860 -17.37839 -16.23693 -15.74971 -15.19088 -14.91396 -14.76719 -14.08215 -13.88437 -13.72872 -13.48165 -13.18065 -13.15638 -12.71580 -12.42191 -12.31536 -11.83776 -11.64572 -11.42093 -11.24802 -11.14280 -10.74695 -10.49605 -10.26324 -10.02060 -9.56886 -9.16227 -9.05445 -8.82637 -8.82425 -8.54247 -8.40295 -7.06054 -6.26556 -3.18677 1.73936 2.30802 3.04221 3.37577 3.42527 3.53204 3.63594 3.75598 4.60774 4.70905 4.80700 4.90256 5.00792 5.07829 5.21916 5.32220 5.46732 5.56806 5.71905 5.77306 5.83495 5.95153 6.03715 6.11150 6.21974 6.24862 6.30566 6.34771 6.42604 6.60091 6.66837 6.71453 6.77854 6.85990 7.05999 7.16948 7.26764 7.35538 7.90283 8.27947 8.62812 9.01684 9.54291 10.41822 11.24538 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025191 B = 0.004596 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.246293 B = 6090.381963 C = 6444.760964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.110 4.110 3 C -0.031 4.031 4 N -0.551 5.551 5 H 0.416 0.584 6 C 0.044 3.956 7 C -0.222 4.222 8 C 0.587 3.413 9 O -0.545 6.545 10 N -0.723 5.723 11 C 0.174 3.826 12 H 0.083 0.917 13 C -0.150 4.150 14 C -0.145 4.145 15 C 0.131 3.869 16 N -0.623 5.623 17 C -0.297 4.297 18 H 0.082 0.918 19 C -0.024 4.024 20 N -0.937 5.937 21 Si 1.069 2.931 22 H -0.298 1.298 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.097 3.903 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.172 0.828 31 H 0.393 0.607 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.261 0.739 39 H 0.043 0.957 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.049 21.022 10.560 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.158 4.158 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.092 4.092 7 C -0.233 4.233 8 C 0.375 3.625 9 O -0.424 6.424 10 N -0.373 5.373 11 C 0.071 3.929 12 H 0.101 0.899 13 C -0.208 4.208 14 C -0.165 4.165 15 C 0.004 3.996 16 N -0.351 5.351 17 C -0.424 4.424 18 H 0.100 0.900 19 C -0.223 4.223 20 N -0.579 5.579 21 Si 0.902 3.098 22 H -0.225 1.225 23 H -0.220 1.220 24 H -0.216 1.216 25 C -0.029 4.029 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.189 0.811 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.411 21.350 9.377 23.322 hybrid contribution -0.048 -0.367 1.015 1.080 sum 0.363 20.983 10.392 23.418 Atomic orbital electron populations 1.20188 0.89378 1.02604 1.01858 1.20574 0.95660 0.90398 1.04971 1.21551 0.82486 0.99130 1.12626 1.41462 1.08242 1.06675 1.58172 0.74765 1.21952 0.98673 0.83825 1.04761 1.20502 0.92614 0.93130 1.17044 1.17365 0.85533 0.83864 0.75754 1.90728 1.17207 1.83714 1.50725 1.46005 1.09133 1.06544 1.75583 1.20557 0.96377 0.77866 0.98147 0.89860 1.22213 1.01240 1.02860 0.94463 1.23253 0.97618 0.96964 0.98624 1.22292 0.98121 0.90862 0.88369 1.46038 1.46209 1.33860 1.09032 1.20083 1.14104 1.14851 0.93329 0.90010 1.25640 1.00532 1.02889 0.93239 1.70908 1.37719 1.15793 1.33490 0.83758 0.76124 0.75021 0.74909 1.22507 1.21959 1.21577 1.22868 0.93861 0.90270 0.95865 0.91929 0.92551 0.90172 0.81563 0.81112 0.77419 0.89188 0.94471 0.92223 0.90501 0.93451 0.94279 0.92938 0.93965 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.97 36.01 0.36 -0.61 16 2 C -0.11 -1.34 6.35 -102.54 -0.65 -1.99 16 3 C -0.03 -0.27 11.82 -16.82 -0.20 -0.47 16 4 N -0.55 -4.05 5.90 -12.84 -0.08 -4.13 16 5 H 0.42 1.52 8.96 -40.82 -0.37 1.15 16 6 C 0.04 0.42 11.40 -16.84 -0.19 0.23 16 7 C -0.22 -2.96 6.29 -103.35 -0.65 -3.61 16 8 C 0.59 9.54 7.77 -12.59 -0.10 9.44 16 9 O -0.55 -10.71 14.99 5.25 0.08 -10.63 16 10 N -0.72 -10.79 5.07 -54.93 -0.28 -11.07 16 11 C 0.17 3.01 2.76 -67.93 -0.19 2.82 16 12 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.15 -3.08 8.06 37.16 0.30 -2.78 16 14 C -0.14 -2.41 4.25 -89.97 -0.38 -2.79 16 15 C 0.13 2.49 7.86 -8.51 -0.07 2.43 16 16 N -0.62 -14.64 2.09 -184.59 -0.39 -15.02 16 17 C -0.30 -8.33 9.92 -15.06 -0.15 -8.48 16 18 H 0.08 2.44 8.05 -52.49 -0.42 2.02 16 19 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 20 N -0.94 -29.52 13.71 55.49 0.76 -28.76 16 21 Si 1.07 26.45 24.89 -169.99 -4.23 22.22 16 22 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.29 -6.74 5.95 56.52 0.34 -6.40 16 24 H -0.29 -6.64 6.22 56.52 0.35 -6.29 16 25 C 0.10 1.94 4.68 -8.36 -0.04 1.90 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.15 6.86 -51.93 -0.36 0.79 16 29 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 30 H 0.17 1.12 7.45 -52.49 -0.39 0.73 16 31 H 0.39 4.77 7.55 -40.82 -0.31 4.46 16 32 H 0.09 2.06 5.93 -51.93 -0.31 1.75 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.32 5.50 -51.93 -0.29 1.04 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.26 8.14 8.73 -40.82 -0.36 7.78 16 39 H 0.04 0.83 7.61 -51.93 -0.40 0.44 16 40 H 0.06 1.13 3.47 -51.93 -0.18 0.95 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -35.34 317.12 -7.04 -42.38 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.63 Total: 4.97 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.05 Total: -4.73 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.02 Total: -58.98 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.23 Total: 22.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.34 -7.04 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970873901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.488 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds