Wall clock time and date at job start Mon Mar 30 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34488 * 126.83535 * 2 1 4 4 N 1.36448 * 108.85682 * 180.26694 * 3 2 1 5 5 H 0.96998 * 124.85050 * 179.68860 * 4 3 2 6 6 C 1.34656 * 110.29839 * 359.71638 * 4 3 2 7 7 C 1.36770 * 108.39524 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.94229 * 179.97438 * 7 6 4 9 9 O 1.21626 * 119.99999 * 180.02562 * 8 7 6 10 10 N 1.34778 * 119.99912 * 0.02932 * 8 7 6 11 11 C 1.46494 * 119.99891 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47269 * 324.99881 * 11 10 8 13 13 C 1.53003 * 109.47388 * 84.99712 * 11 10 8 14 14 C 1.52997 * 109.47346 * 204.99515 * 11 10 8 15 15 C 1.53493 * 114.21093 * 180.02562 * 14 11 10 16 16 N 1.47063 * 87.98878 * 87.52231 * 15 14 11 17 17 C 1.36937 * 136.06294 * 207.09193 * 16 15 14 18 18 H 1.08002 * 119.99154 * 8.42658 * 17 16 15 19 19 C 1.38809 * 120.00444 * 188.43562 * 17 16 15 20 20 N 1.31615 * 120.00184 * 174.84707 * 19 17 16 21 21 Si 1.86804 * 119.99817 * 354.84535 * 19 17 16 22 22 H 1.48500 * 109.46921 * 174.85685 * 21 19 17 23 23 H 1.48499 * 109.46931 * 294.85807 * 21 19 17 24 24 H 1.48497 * 109.47301 * 54.85270 * 21 19 17 25 25 C 1.47077 * 87.88326 * 27.34112 * 16 15 14 26 26 H 1.08997 * 109.47112 * 270.20034 * 1 2 3 27 27 H 1.09004 * 109.47159 * 30.19352 * 1 2 3 28 28 H 1.08995 * 109.47611 * 150.19773 * 1 2 3 29 29 H 1.08008 * 125.57241 * 359.97438 * 3 2 1 30 30 H 1.08000 * 125.80640 * 180.02562 * 6 4 3 31 31 H 0.96998 * 120.00081 * 359.97438 * 10 8 7 32 32 H 1.09001 * 109.47114 * 180.02562 * 13 11 10 33 33 H 1.08997 * 109.46839 * 300.00194 * 13 11 10 34 34 H 1.09001 * 109.47234 * 60.00090 * 13 11 10 35 35 H 1.09006 * 113.40935 * 46.79695 * 14 11 10 36 36 H 1.08997 * 113.46804 * 332.73869 * 15 14 11 37 37 H 1.09009 * 113.52158 * 202.31079 * 15 14 11 38 38 H 0.97003 * 120.00032 * 357.02883 * 20 19 17 39 39 H 1.09000 * 113.46243 * 87.44347 * 25 16 15 40 40 H 1.08997 * 113.46338 * 217.88020 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0060 5 1 4.3840 1.2413 -0.0116 6 6 3.6656 -0.6902 -0.0037 7 6 2.3864 -1.1740 0.0045 8 6 1.9749 -2.5880 0.0091 9 8 0.7936 -2.8776 0.0160 10 7 2.9073 -3.5612 0.0057 11 6 2.4979 -4.9678 0.0108 12 1 1.5915 -5.0803 0.6056 13 6 2.2265 -5.4252 -1.4238 14 6 3.6142 -5.8216 0.6156 15 6 3.2976 -7.3225 0.6734 16 7 3.8400 -7.4365 -0.6888 17 6 3.6467 -8.2662 -1.7609 18 1 2.8442 -8.9888 -1.7466 19 6 4.4822 -8.1786 -2.8660 20 7 4.3616 -9.0417 -3.8523 21 14 5.7778 -6.8357 -2.9532 22 1 6.6144 -7.0329 -4.1641 23 1 5.1125 -5.5098 -3.0216 24 1 6.6362 -6.8967 -1.7430 25 6 4.6862 -6.2711 -0.3908 26 1 -0.3633 0.0036 1.0276 27 1 -0.3634 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5107 29 1 1.9868 2.1060 -0.0004 30 1 4.5664 -1.2861 -0.0069 31 1 3.8494 -3.3303 -0.0002 32 1 1.9214 -6.4717 -1.4199 33 1 1.4313 -4.8169 -1.8547 34 1 3.1329 -5.3128 -2.0187 35 1 4.0177 -5.4137 1.5424 36 1 2.2312 -7.5391 0.7355 37 1 3.8812 -7.8618 1.4195 38 1 3.7183 -9.7649 -3.7880 39 1 5.6364 -6.5324 0.0749 40 1 4.8027 -5.5920 -1.2354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970873901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:37 Heat of formation + Delta-G solvation = 47.820588 kcal Electronic energy + Delta-G solvation = -21813.937448 eV Core-core repulsion = 18630.685514 eV Total energy + Delta-G solvation = -3183.251934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.05828 -41.13686 -39.61398 -35.88132 -34.45789 -33.28947 -32.06568 -30.11931 -29.65083 -27.40678 -26.98350 -25.76663 -24.05826 -22.56589 -20.85770 -20.73654 -19.93529 -19.32306 -18.99860 -17.41978 -17.15313 -16.91533 -16.21608 -15.91901 -15.72894 -15.09971 -14.99722 -14.84588 -14.40837 -14.20639 -13.78375 -13.55535 -13.47417 -13.32350 -13.22904 -12.99572 -12.92790 -12.47543 -12.27597 -12.13550 -12.00579 -11.65392 -11.20025 -11.01709 -10.82010 -10.72059 -10.05849 -9.48005 -9.12823 -9.05749 -8.55291 -5.37952 0.85600 1.38332 1.51132 1.54729 1.69316 2.26069 2.53011 2.60208 2.65854 3.08933 3.29873 3.56949 3.83045 4.05191 4.11278 4.28479 4.35508 4.45112 4.51603 4.54721 4.71722 4.73435 4.75668 4.83319 4.88866 4.92986 4.96631 5.04593 5.10677 5.19689 5.29685 5.37528 5.39354 5.52839 5.69596 5.87710 6.01578 6.02735 6.72732 6.77738 6.81344 7.41233 7.46603 8.37001 8.98156 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025191 B = 0.004596 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.246293 B = 6090.381963 C = 6444.760964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.153 4.153 3 C -0.010 4.010 4 N -0.532 5.532 5 H 0.438 0.562 6 C 0.069 3.931 7 C -0.271 4.271 8 C 0.582 3.418 9 O -0.593 6.593 10 N -0.711 5.711 11 C 0.183 3.817 12 H 0.075 0.925 13 C -0.136 4.136 14 C -0.112 4.112 15 C 0.124 3.876 16 N -0.654 5.654 17 C -0.273 4.273 18 H 0.043 0.957 19 C -0.089 4.089 20 N -0.979 5.979 21 Si 1.106 2.894 22 H -0.314 1.314 23 H -0.269 1.269 24 H -0.253 1.253 25 C 0.091 3.909 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.042 0.958 29 H 0.202 0.798 30 H 0.205 0.795 31 H 0.410 0.590 32 H 0.058 0.942 33 H 0.024 0.976 34 H 0.045 0.955 35 H 0.127 0.873 36 H 0.041 0.959 37 H 0.064 0.936 38 H 0.243 0.757 39 H 0.065 0.935 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 24.890 12.935 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.279 0.721 6 C -0.069 4.069 7 C -0.281 4.281 8 C 0.373 3.627 9 O -0.475 6.475 10 N -0.362 5.362 11 C 0.078 3.922 12 H 0.093 0.907 13 C -0.195 4.195 14 C -0.131 4.131 15 C -0.001 4.001 16 N -0.383 5.383 17 C -0.401 4.401 18 H 0.061 0.939 19 C -0.279 4.279 20 N -0.626 5.626 21 Si 0.933 3.067 22 H -0.243 1.243 23 H -0.195 1.195 24 H -0.178 1.178 25 C -0.033 4.033 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.218 0.782 30 H 0.222 0.778 31 H 0.247 0.753 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.145 0.855 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.162 25.278 11.829 28.087 hybrid contribution -1.007 -1.534 0.346 1.867 sum 2.155 23.744 12.175 26.770 Atomic orbital electron populations 1.20089 0.90169 1.01834 1.01496 1.20806 0.95912 0.91516 1.07670 1.21957 0.82414 0.99713 1.09693 1.41528 1.08737 1.06382 1.56107 0.72099 1.22333 0.98202 0.84756 1.01623 1.20419 0.94870 0.91613 1.21232 1.17910 0.84939 0.85304 0.74564 1.90703 1.19255 1.84570 1.52978 1.45760 1.10017 1.05089 1.75335 1.20266 0.96817 0.79607 0.95529 0.90685 1.22028 0.99864 1.00713 0.96876 1.23020 0.95600 0.95056 0.99423 1.22560 0.98039 0.93106 0.86437 1.46090 1.47834 1.34494 1.09873 1.19855 1.11855 1.13393 0.94991 0.93906 1.27005 1.03095 1.04691 0.93139 1.71023 1.39077 1.17131 1.35328 0.83359 0.74254 0.73521 0.75614 1.24257 1.19526 1.17759 1.23112 0.95007 0.88539 0.96617 0.92192 0.90277 0.93857 0.78166 0.77790 0.75332 0.92338 0.95728 0.93645 0.85534 0.94094 0.91850 0.94808 0.91777 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.97 71.24 0.71 -1.13 16 2 C -0.15 -3.48 6.35 -18.51 -0.12 -3.59 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.85 16 4 N -0.53 -5.14 5.90 -194.55 -1.15 -6.29 16 5 H 0.44 0.64 8.96 -92.71 -0.83 -0.19 16 6 C 0.07 1.00 11.40 83.92 0.96 1.96 16 7 C -0.27 -6.66 6.29 -19.04 -0.12 -6.78 16 8 C 0.58 18.44 7.77 86.62 0.67 19.11 16 9 O -0.59 -24.01 14.99 -4.11 -0.06 -24.07 16 10 N -0.71 -19.48 5.07 -445.96 -2.26 -21.74 16 11 C 0.18 6.02 2.76 44.99 0.12 6.14 16 12 H 0.08 2.66 7.58 -2.39 -0.02 2.65 16 13 C -0.14 -5.67 8.06 71.98 0.58 -5.09 16 14 C -0.11 -3.28 4.25 -10.37 -0.04 -3.32 16 15 C 0.12 4.47 7.86 83.18 0.65 5.12 16 16 N -0.65 -30.04 2.09 -737.90 -1.54 -31.58 16 17 C -0.27 -15.72 9.92 84.03 0.83 -14.89 16 18 H 0.04 2.73 8.05 -2.91 -0.02 2.70 16 19 C -0.09 -5.30 5.50 84.86 0.47 -4.83 16 20 N -0.98 -64.43 13.71 21.65 0.30 -64.14 16 21 Si 1.11 52.57 24.89 68.60 1.71 54.27 16 22 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 23 H -0.27 -11.60 5.95 99.48 0.59 -11.01 16 24 H -0.25 -10.44 6.22 99.48 0.62 -9.82 16 25 C 0.09 3.31 4.68 83.27 0.39 3.70 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 29 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.21 1.44 7.45 -2.91 -0.02 1.42 16 31 H 0.41 8.18 7.55 -92.71 -0.70 7.48 16 32 H 0.06 2.77 5.93 -2.39 -0.01 2.76 16 33 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.04 1.98 5.50 -2.39 -0.01 1.97 16 35 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 36 H 0.04 1.51 8.12 -2.39 -0.02 1.49 16 37 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.24 16.16 8.73 -92.71 -0.81 15.35 16 39 H 0.06 2.13 7.61 -2.39 -0.02 2.11 16 40 H 0.05 1.93 3.47 -2.39 -0.01 1.92 16 Total: -1.00 -83.89 317.12 2.39 -81.50 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.70 Total: 14.80 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 6.09 Total: -2.76 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -4.65 Total: -123.74 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.06 Total: -24.07 kcal Atomic # 14 Polarization: 52.57 SS G_CDS: 1.71 Total: 54.27 kcal Total: -83.89 2.39 -81.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970873901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.322 kcal (2) G-P(sol) polarization free energy of solvation -83.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds