Wall clock time and date at job start Mon Mar 30 2020 02:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 126.83450 * 2 1 4 4 N 1.36446 * 108.85893 * 180.26181 * 3 2 1 5 5 H 0.96998 * 124.85318 * 179.69018 * 4 3 2 6 6 C 1.34664 * 110.29469 * 359.70518 * 4 3 2 7 7 C 1.36762 * 108.39829 * 0.02562 * 6 4 3 8 8 C 1.47264 * 126.94185 * 179.97438 * 7 6 4 9 9 O 1.21633 * 119.99975 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99990 * 359.74999 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27781 * 10 8 7 12 12 H 1.09001 * 109.47451 * 34.99522 * 11 10 8 13 13 C 1.52997 * 109.46930 * 274.99613 * 11 10 8 14 14 C 1.52994 * 109.46860 * 154.99819 * 11 10 8 15 15 C 1.53946 * 113.74103 * 278.73553 * 14 11 10 16 16 N 1.47813 * 86.03776 * 222.08445 * 15 14 11 17 17 C 1.36937 * 134.45699 * 204.63837 * 16 15 14 18 18 H 1.08003 * 119.99640 * 179.87213 * 17 16 15 19 19 C 1.38815 * 120.00077 * 359.87723 * 17 16 15 20 20 N 1.31611 * 119.99972 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99812 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47384 * 89.99788 * 21 19 17 23 23 H 1.48499 * 109.46976 * 209.99637 * 21 19 17 24 24 H 1.48500 * 109.47052 * 329.99555 * 21 19 17 25 25 C 1.47579 * 91.04917 * 24.55131 * 16 15 14 26 26 H 1.08998 * 109.47246 * 270.20564 * 1 2 3 27 27 H 1.08996 * 109.47097 * 30.21547 * 1 2 3 28 28 H 1.09004 * 109.46734 * 150.20776 * 1 2 3 29 29 H 1.07999 * 125.56928 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.79630 * 180.02562 * 6 4 3 31 31 H 0.97000 * 119.99736 * 0.27056 * 10 8 7 32 32 H 1.08998 * 109.47338 * 180.02562 * 13 11 10 33 33 H 1.09001 * 109.46979 * 300.00198 * 13 11 10 34 34 H 1.09000 * 109.47470 * 59.99994 * 13 11 10 35 35 H 1.09000 * 112.94872 * 50.32747 * 14 11 10 36 36 H 1.09001 * 113.77282 * 336.35237 * 15 14 11 37 37 H 1.09005 * 113.76926 * 107.74919 * 15 14 11 38 38 H 0.97000 * 120.00134 * 180.02562 * 20 19 17 39 39 H 1.09006 * 113.76945 * 221.14715 * 25 16 15 40 40 H 1.08998 * 113.87187 * 89.76628 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0114 6 6 3.6656 -0.6902 -0.0033 7 6 2.3864 -1.1741 0.0039 8 6 1.9750 -2.5880 0.0084 9 8 0.7937 -2.8777 0.0142 10 7 2.9074 -3.5612 0.0003 11 6 2.4980 -4.9679 -0.0014 12 1 1.5848 -5.0799 -0.5859 13 6 2.2430 -5.4265 1.4358 14 6 3.6073 -5.8210 -0.6198 15 6 3.6026 -5.8228 -2.1592 16 7 3.8696 -7.2729 -2.0562 17 6 4.4521 -8.2015 -2.8770 18 1 4.5299 -9.2306 -2.5584 19 6 4.9424 -7.8203 -4.1184 20 7 4.8471 -6.5664 -4.5068 21 14 5.7376 -9.0870 -5.2377 22 1 4.7019 -9.6959 -6.1105 23 1 6.7680 -8.4268 -6.0789 24 1 6.3749 -10.1451 -4.4135 25 6 3.2588 -7.3176 -0.7135 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5106 29 1 1.9867 2.1058 0.0004 30 1 4.5665 -1.2860 -0.0063 31 1 3.8495 -3.3302 -0.0045 32 1 1.9389 -6.4732 1.4346 33 1 3.1562 -5.3145 2.0203 34 1 1.4528 -4.8187 1.8764 35 1 4.5870 -5.6250 -0.1842 36 1 2.6327 -5.5845 -2.5959 37 1 4.4209 -5.2546 -2.6017 38 1 5.1894 -6.3000 -5.3744 39 1 3.8031 -7.9408 -0.0038 40 1 2.1878 -7.5196 -0.7226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970873902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:40 Heat of formation + Delta-G solvation = 55.574022 kcal Electronic energy + Delta-G solvation = -21269.951318 eV Core-core repulsion = 18087.035598 eV Total energy + Delta-G solvation = -3182.915720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20623 -39.20762 -37.76645 -34.60674 -32.43153 -32.19701 -30.94468 -29.05460 -27.45376 -26.56360 -24.85023 -24.01003 -22.89073 -21.01386 -19.83708 -19.60596 -18.61877 -18.22720 -16.70964 -16.05280 -15.76868 -14.91379 -14.81798 -14.13644 -13.92035 -13.81911 -13.73337 -13.31119 -13.10730 -12.87584 -12.66513 -12.35635 -12.31144 -11.98303 -11.58097 -11.38553 -11.23579 -11.22609 -10.87452 -10.66519 -10.28631 -9.89634 -9.67261 -9.50590 -9.31686 -8.77077 -8.75275 -8.49173 -8.34048 -6.82340 -5.72420 -3.04334 1.80654 2.36650 3.10907 3.41368 3.46024 3.47952 3.59073 3.81134 4.48967 4.78072 4.96543 5.05182 5.17980 5.34549 5.38247 5.40442 5.56799 5.62740 5.76259 5.78815 5.87852 5.91774 6.02696 6.08999 6.13944 6.28483 6.35566 6.46621 6.50468 6.67825 6.76207 6.78270 6.84301 6.97360 7.29729 7.33239 7.43567 7.61153 7.94681 8.02690 8.67624 9.09059 9.75319 10.65665 11.44702 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.003820 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.647128 B = 7327.633079 C = 7957.230009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.110 4.110 3 C -0.031 4.031 4 N -0.552 5.552 5 H 0.416 0.584 6 C 0.046 3.954 7 C -0.222 4.222 8 C 0.587 3.413 9 O -0.548 6.548 10 N -0.718 5.718 11 C 0.153 3.847 12 H 0.087 0.913 13 C -0.157 4.157 14 C -0.146 4.146 15 C 0.171 3.829 16 N -0.614 5.614 17 C -0.222 4.222 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.130 3.870 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.166 0.834 30 H 0.172 0.828 31 H 0.395 0.605 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.253 0.747 39 H 0.043 0.957 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 15.660 12.143 19.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.158 4.158 4 N -0.146 5.146 5 H 0.252 0.748 6 C -0.090 4.090 7 C -0.233 4.233 8 C 0.376 3.624 9 O -0.426 6.426 10 N -0.368 5.368 11 C 0.048 3.952 12 H 0.105 0.895 13 C -0.216 4.216 14 C -0.166 4.166 15 C 0.046 3.954 16 N -0.340 5.340 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.003 3.997 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.190 0.810 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.411 15.410 11.843 19.584 hybrid contribution 1.315 -0.276 -0.788 1.558 sum -1.096 15.134 11.055 18.773 Atomic orbital electron populations 1.20185 0.89428 1.02614 1.01772 1.20569 0.95630 0.90440 1.05031 1.21537 0.82518 0.99105 1.12682 1.41466 1.08221 1.06710 1.58171 0.74778 1.21968 0.98710 0.83795 1.04519 1.20482 0.92592 0.93120 1.17114 1.17383 0.85531 0.83926 0.75606 1.90722 1.17269 1.83753 1.50895 1.45924 1.09204 1.06245 1.75419 1.21031 0.98908 0.79046 0.96224 0.89524 1.22127 1.01307 1.01504 0.96642 1.23792 0.97202 0.95894 0.99690 1.22288 0.98616 0.85996 0.88500 1.46020 1.66435 1.06085 1.15437 1.19041 1.29840 0.89736 0.96347 0.90314 1.24770 1.01706 0.96544 0.97477 1.69821 1.51226 1.15031 1.20822 0.86139 0.78743 0.80292 0.80717 1.21646 1.21687 1.20649 1.22491 0.96047 0.92497 0.88640 0.92005 0.92580 0.90155 0.81624 0.81048 0.77186 0.91608 0.92923 0.92745 0.89562 0.95583 0.91136 0.93731 0.93849 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.97 36.01 0.36 -0.63 16 2 C -0.11 -1.38 6.35 -102.54 -0.65 -2.04 16 3 C -0.03 -0.29 11.82 -16.83 -0.20 -0.49 16 4 N -0.55 -4.32 5.90 -12.85 -0.08 -4.39 16 5 H 0.42 1.74 8.96 -40.82 -0.37 1.38 16 6 C 0.05 0.46 11.40 -16.84 -0.19 0.27 16 7 C -0.22 -3.03 6.29 -103.35 -0.65 -3.68 16 8 C 0.59 9.53 7.77 -12.59 -0.10 9.43 16 9 O -0.55 -10.67 14.98 5.25 0.08 -10.59 16 10 N -0.72 -10.50 5.07 -54.93 -0.28 -10.78 16 11 C 0.15 2.48 2.38 -67.93 -0.16 2.32 16 12 H 0.09 1.64 7.41 -51.93 -0.39 1.25 16 13 C -0.16 -2.22 9.31 37.16 0.35 -1.87 16 14 C -0.15 -2.67 3.47 -89.70 -0.31 -2.98 16 15 C 0.17 4.08 7.08 -2.84 -0.02 4.06 16 16 N -0.61 -16.02 3.70 -177.68 -0.66 -16.68 16 17 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 18 H 0.08 2.17 7.83 -52.48 -0.41 1.75 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.72 11.39 55.49 0.63 -27.09 16 21 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 C 0.13 2.66 7.64 -2.97 -0.02 2.64 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.16 6.86 -51.93 -0.36 0.81 16 29 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.17 1.22 7.45 -52.48 -0.39 0.83 16 31 H 0.39 4.78 7.55 -40.82 -0.31 4.47 16 32 H 0.06 0.89 7.52 -51.93 -0.39 0.50 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.03 0.66 7.99 -51.93 -0.41 0.25 16 37 H 0.07 1.83 7.17 -51.93 -0.37 1.46 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 333.66 15.07 5.03 5.03 Total: -1.00 -35.58 333.66 -8.06 -43.64 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.91 Total: 3.31 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.86 Total: 0.18 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.38 Total: -58.94 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.58 -8.06 -43.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970873902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.219 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds