Wall clock time and date at job start Mon Mar 30 2020 02:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 126.83450 * 2 1 4 4 N 1.36446 * 108.85893 * 180.26181 * 3 2 1 5 5 H 0.96998 * 124.85318 * 179.69018 * 4 3 2 6 6 C 1.34664 * 110.29469 * 359.70518 * 4 3 2 7 7 C 1.36762 * 108.39829 * 0.02562 * 6 4 3 8 8 C 1.47264 * 126.94185 * 179.97438 * 7 6 4 9 9 O 1.21633 * 119.99975 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99990 * 359.74999 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27781 * 10 8 7 12 12 H 1.09001 * 109.47451 * 34.99522 * 11 10 8 13 13 C 1.52997 * 109.46930 * 274.99613 * 11 10 8 14 14 C 1.52994 * 109.46860 * 154.99819 * 11 10 8 15 15 C 1.53946 * 113.74103 * 278.73553 * 14 11 10 16 16 N 1.47813 * 86.03776 * 222.08445 * 15 14 11 17 17 C 1.36937 * 134.45699 * 204.63837 * 16 15 14 18 18 H 1.08003 * 119.99640 * 179.87213 * 17 16 15 19 19 C 1.38815 * 120.00077 * 359.87723 * 17 16 15 20 20 N 1.31611 * 119.99972 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99812 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47384 * 89.99788 * 21 19 17 23 23 H 1.48499 * 109.46976 * 209.99637 * 21 19 17 24 24 H 1.48500 * 109.47052 * 329.99555 * 21 19 17 25 25 C 1.47579 * 91.04917 * 24.55131 * 16 15 14 26 26 H 1.08998 * 109.47246 * 270.20564 * 1 2 3 27 27 H 1.08996 * 109.47097 * 30.21547 * 1 2 3 28 28 H 1.09004 * 109.46734 * 150.20776 * 1 2 3 29 29 H 1.07999 * 125.56928 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.79630 * 180.02562 * 6 4 3 31 31 H 0.97000 * 119.99736 * 0.27056 * 10 8 7 32 32 H 1.08998 * 109.47338 * 180.02562 * 13 11 10 33 33 H 1.09001 * 109.46979 * 300.00198 * 13 11 10 34 34 H 1.09000 * 109.47470 * 59.99994 * 13 11 10 35 35 H 1.09000 * 112.94872 * 50.32747 * 14 11 10 36 36 H 1.09001 * 113.77282 * 336.35237 * 15 14 11 37 37 H 1.09005 * 113.76926 * 107.74919 * 15 14 11 38 38 H 0.97000 * 120.00134 * 180.02562 * 20 19 17 39 39 H 1.09006 * 113.76945 * 221.14715 * 25 16 15 40 40 H 1.08998 * 113.87187 * 89.76628 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0114 6 6 3.6656 -0.6902 -0.0033 7 6 2.3864 -1.1741 0.0039 8 6 1.9750 -2.5880 0.0084 9 8 0.7937 -2.8777 0.0142 10 7 2.9074 -3.5612 0.0003 11 6 2.4980 -4.9679 -0.0014 12 1 1.5848 -5.0799 -0.5859 13 6 2.2430 -5.4265 1.4358 14 6 3.6073 -5.8210 -0.6198 15 6 3.6026 -5.8228 -2.1592 16 7 3.8696 -7.2729 -2.0562 17 6 4.4521 -8.2015 -2.8770 18 1 4.5299 -9.2306 -2.5584 19 6 4.9424 -7.8203 -4.1184 20 7 4.8471 -6.5664 -4.5068 21 14 5.7376 -9.0870 -5.2377 22 1 4.7019 -9.6959 -6.1105 23 1 6.7680 -8.4268 -6.0789 24 1 6.3749 -10.1451 -4.4135 25 6 3.2588 -7.3176 -0.7135 26 1 -0.3633 0.0037 1.0276 27 1 -0.3633 0.8880 -0.5172 28 1 -0.3633 -0.8919 -0.5106 29 1 1.9867 2.1058 0.0004 30 1 4.5665 -1.2860 -0.0063 31 1 3.8495 -3.3302 -0.0045 32 1 1.9389 -6.4732 1.4346 33 1 3.1562 -5.3145 2.0203 34 1 1.4528 -4.8187 1.8764 35 1 4.5870 -5.6250 -0.1842 36 1 2.6327 -5.5845 -2.5959 37 1 4.4209 -5.2546 -2.6017 38 1 5.1894 -6.3000 -5.3744 39 1 3.8031 -7.9408 -0.0038 40 1 2.1878 -7.5196 -0.7226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970873902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:39 Heat of formation + Delta-G solvation = 30.404338 kcal Electronic energy + Delta-G solvation = -21271.042757 eV Core-core repulsion = 18087.035598 eV Total energy + Delta-G solvation = -3184.007159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.02980 -40.59145 -39.33707 -36.06696 -34.16436 -33.28126 -32.25893 -30.12996 -29.29459 -27.39774 -26.59525 -25.65924 -24.22828 -22.43219 -21.16863 -20.63215 -19.83110 -19.10015 -18.72227 -17.22094 -17.12996 -16.87134 -15.95755 -15.72501 -15.28163 -15.01257 -14.81766 -14.55557 -14.35221 -14.18228 -13.85746 -13.54205 -13.38184 -13.23488 -13.21888 -13.07180 -12.89223 -12.66103 -12.48981 -12.27334 -11.97121 -11.72222 -11.44698 -11.22385 -10.87767 -10.72171 -9.99386 -9.46093 -9.12328 -8.91169 -7.89529 -5.23338 0.86872 1.45389 1.47949 1.55300 1.56418 2.31502 2.48168 2.54685 2.68552 3.31205 3.40445 3.77367 3.98456 4.05713 4.17097 4.33536 4.35426 4.50151 4.56454 4.62493 4.75304 4.76941 4.85971 4.90444 4.93895 4.97623 5.04372 5.14731 5.21383 5.27390 5.36496 5.38886 5.53129 5.62723 5.73337 5.88778 5.94516 6.02081 6.73301 6.82342 6.92556 7.48927 7.61710 8.58124 9.27474 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023771 B = 0.003820 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.647128 B = 7327.633079 C = 7957.230009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.154 4.154 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.067 3.933 7 C -0.270 4.270 8 C 0.581 3.419 9 O -0.593 6.593 10 N -0.710 5.710 11 C 0.161 3.839 12 H 0.053 0.947 13 C -0.147 4.147 14 C -0.107 4.107 15 C 0.168 3.832 16 N -0.644 5.644 17 C -0.237 4.237 18 H 0.085 0.915 19 C -0.068 4.068 20 N -0.955 5.955 21 Si 0.979 3.021 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.265 1.265 25 C 0.129 3.871 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.202 0.798 30 H 0.201 0.799 31 H 0.409 0.591 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.108 0.892 36 H -0.001 1.001 37 H 0.044 0.956 38 H 0.248 0.752 39 H 0.066 0.934 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 16.593 13.564 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.160 4.160 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.278 0.722 6 C -0.072 4.072 7 C -0.280 4.280 8 C 0.372 3.628 9 O -0.476 6.476 10 N -0.361 5.361 11 C 0.056 3.944 12 H 0.072 0.928 13 C -0.206 4.206 14 C -0.126 4.126 15 C 0.043 3.957 16 N -0.371 5.371 17 C -0.365 4.365 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.604 5.604 21 Si 0.807 3.193 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.190 1.190 25 C 0.004 3.996 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.219 0.781 30 H 0.218 0.782 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.126 0.874 36 H 0.017 0.983 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.527 16.360 13.305 21.094 hybrid contribution 0.723 -0.511 -1.219 1.507 sum 0.195 15.849 12.086 19.932 Atomic orbital electron populations 1.20090 0.90007 1.01880 1.01540 1.20823 0.96004 0.91448 1.07687 1.21968 0.82360 0.99754 1.09712 1.41525 1.08777 1.06333 1.56207 0.72187 1.22299 0.98238 0.84791 1.01849 1.20459 0.94770 0.91868 1.20947 1.17880 0.84999 0.85292 0.74634 1.90689 1.19135 1.84575 1.53160 1.45782 1.09884 1.05350 1.75089 1.20765 0.96564 0.79885 0.97204 0.92837 1.22030 1.02161 1.01632 0.94738 1.23423 0.98802 0.94970 0.95442 1.22163 0.96043 0.85160 0.92358 1.46455 1.66861 1.06591 1.17176 1.19487 1.29446 0.90596 0.96985 0.89720 1.25642 1.02861 0.98488 0.99094 1.70020 1.52549 1.16945 1.20901 0.85067 0.77526 0.78121 0.78559 1.21707 1.21892 1.18957 1.22683 0.96267 0.94207 0.86436 0.92079 0.90269 0.93788 0.78090 0.78184 0.75526 0.90842 0.90627 0.93558 0.87442 0.98347 0.93809 0.94332 0.91548 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.97 71.24 0.71 -1.21 16 2 C -0.15 -3.76 6.35 -18.51 -0.12 -3.88 16 3 C -0.01 -0.15 11.82 83.12 0.98 0.83 16 4 N -0.53 -6.46 5.90 -194.56 -1.15 -7.61 16 5 H 0.44 1.74 8.96 -92.71 -0.83 0.90 16 6 C 0.07 1.15 11.40 83.91 0.96 2.11 16 7 C -0.27 -7.24 6.29 -19.04 -0.12 -7.36 16 8 C 0.58 19.39 7.77 86.62 0.67 20.07 16 9 O -0.59 -24.58 14.98 -4.14 -0.06 -24.64 16 10 N -0.71 -20.62 5.07 -445.95 -2.26 -22.88 16 11 C 0.16 5.22 2.38 44.99 0.11 5.32 16 12 H 0.05 2.11 7.41 -2.39 -0.02 2.10 16 13 C -0.15 -3.93 9.31 71.98 0.67 -3.26 16 14 C -0.11 -3.82 3.47 -10.14 -0.04 -3.86 16 15 C 0.17 8.25 7.08 86.44 0.61 8.86 16 16 N -0.64 -33.86 3.70 -716.07 -2.65 -36.51 16 17 C -0.24 -13.57 10.70 84.03 0.90 -12.68 16 18 H 0.09 4.61 7.83 -2.91 -0.02 4.58 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.96 -58.86 11.39 21.65 0.25 -58.62 16 21 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 C 0.13 5.16 7.64 86.49 0.66 5.83 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.37 16 29 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.20 2.14 7.45 -2.91 -0.02 2.12 16 31 H 0.41 9.30 7.55 -92.71 -0.70 8.60 16 32 H 0.07 1.84 7.52 -2.39 -0.02 1.82 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.00 -0.07 7.99 -2.39 -0.02 -0.09 16 37 H 0.04 2.36 7.17 -2.38 -0.02 2.34 16 38 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 39 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 Total: -1.00 -81.21 333.66 2.15 -79.07 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.47 Total: 15.54 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 6.47 Total: 7.29 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -5.81 Total: -125.61 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.64 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -81.21 2.15 -79.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970873902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.472 kcal (2) G-P(sol) polarization free energy of solvation -81.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds