Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34660 * 125.79971 * 2 1 4 4 H 0.96995 * 124.85393 * 0.02562 * 3 2 1 5 5 C 1.36448 * 110.29563 * 180.29360 * 3 2 1 6 6 C 1.34492 * 108.85606 * 359.74969 * 5 3 2 7 7 C 1.36764 * 125.80175 * 179.86687 * 2 1 3 8 8 C 1.47269 * 126.94099 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00338 * 359.70642 * 8 7 2 10 10 N 1.34777 * 119.99833 * 179.71465 * 8 7 2 11 11 C 1.47022 * 125.64811 * 359.95030 * 10 8 7 12 12 C 1.54327 * 107.27369 * 181.09913 * 11 10 8 13 13 C 1.55162 * 102.93707 * 22.19549 * 12 11 10 14 14 H 1.09004 * 111.03529 * 82.58720 * 13 12 11 15 15 N 1.46505 * 111.00454 * 206.42234 * 13 12 11 16 16 C 1.46498 * 119.99770 * 53.65093 * 15 13 12 17 17 C 1.36929 * 120.00023 * 233.65489 * 15 13 12 18 18 H 1.08001 * 120.00398 * 340.18532 * 17 15 13 19 19 C 1.38811 * 120.00175 * 159.91502 * 17 15 13 20 20 N 1.31615 * 119.99907 * 347.51904 * 19 17 15 21 21 Si 1.86799 * 120.00296 * 167.50951 * 19 17 15 22 22 H 1.48504 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47148 * 120.00373 * 21 19 17 24 24 H 1.48502 * 109.47586 * 240.00211 * 21 19 17 25 25 C 1.47421 * 125.65028 * 180.02562 * 10 8 7 26 26 H 1.09007 * 109.47316 * 270.13317 * 1 2 3 27 27 H 1.09003 * 109.47234 * 30.13480 * 1 2 3 28 28 H 1.09006 * 109.47539 * 150.13445 * 1 2 3 29 29 H 1.08004 * 125.57248 * 179.76405 * 5 3 2 30 30 H 1.07994 * 126.83054 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.88888 * 300.51768 * 11 10 8 32 32 H 1.08997 * 109.88310 * 61.53168 * 11 10 8 33 33 H 1.08997 * 110.72016 * 263.83770 * 12 11 10 34 34 H 1.08994 * 110.72078 * 140.55537 * 12 11 10 35 35 H 1.09000 * 109.47115 * 264.84279 * 16 15 13 36 36 H 1.08997 * 109.47201 * 24.84219 * 16 15 13 37 37 H 1.09001 * 109.47050 * 144.84495 * 16 15 13 38 38 H 0.97000 * 120.00684 * 179.97438 * 20 19 17 39 39 H 1.08998 * 110.36529 * 36.98712 * 25 10 8 40 40 H 1.09003 * 110.36380 * 274.67200 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7275 -0.0066 6 6 3.6881 -0.6152 -0.0053 7 6 2.3070 -1.1092 0.0026 8 6 1.8701 -2.5156 0.0064 9 8 0.6839 -2.7839 0.0129 10 7 2.7849 -3.5054 0.0028 11 6 4.2438 -3.3238 -0.0059 12 6 4.8804 -4.7293 -0.0355 13 6 3.7436 -5.6135 -0.6129 14 1 3.7189 -5.5575 -1.7013 15 7 3.8785 -7.0016 -0.1643 16 6 3.9857 -7.3021 1.2656 17 6 3.9045 -8.0181 -1.0813 18 1 3.5153 -7.8582 -2.0760 19 6 4.4362 -9.2525 -0.7344 20 7 5.1323 -9.3808 0.3752 21 14 4.1638 -10.7316 -1.8423 22 1 3.3548 -10.3258 -3.0197 23 1 5.4757 -11.2554 -2.3003 24 1 3.4446 -11.7894 -1.0879 25 6 2.4883 -4.9495 0.0054 26 1 -0.3634 0.0024 1.0277 27 1 -0.3634 0.8888 -0.5159 28 1 -0.3634 -0.8912 -0.5118 29 1 4.4497 1.4060 -0.0116 30 1 4.5889 -1.2109 -0.0090 31 1 4.5424 -2.7630 -0.8916 32 1 4.5565 -2.7916 0.8924 33 1 5.1474 -5.0530 0.9705 34 1 5.7513 -4.7445 -0.6906 35 1 5.0369 -7.3870 1.5412 36 1 3.5229 -6.5004 1.8410 37 1 3.4773 -8.2424 1.4783 38 1 5.5036 -10.2434 0.6180 39 1 1.6095 -5.1573 -0.6050 40 1 2.3354 -5.3035 1.0249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971298395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = 45.980285 kcal Electronic energy + Delta-G solvation = -21658.384520 eV Core-core repulsion = 18475.052785 eV Total energy + Delta-G solvation = -3183.331736 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30282 -39.20686 -37.14506 -34.76132 -31.92767 -31.54026 -30.88937 -29.65245 -27.78912 -26.42336 -26.00736 -23.90404 -22.44389 -21.37382 -20.69335 -19.20804 -18.28922 -17.60333 -16.98037 -15.88923 -15.77530 -15.05616 -14.83883 -14.35170 -13.79396 -13.71401 -13.29722 -13.23033 -13.17562 -12.76600 -12.65107 -12.44860 -12.35213 -12.17447 -11.78205 -11.61897 -11.07129 -10.88821 -10.68344 -10.41576 -10.39743 -10.17095 -9.82534 -9.78874 -9.47651 -8.89015 -8.55130 -8.36668 -8.02858 -6.78842 -5.71734 -3.16412 1.80466 2.39013 3.01686 3.39833 3.46761 3.48989 3.54526 3.78129 4.50866 4.75599 4.85258 5.06562 5.11466 5.14884 5.39192 5.44267 5.47698 5.54617 5.65110 5.68770 5.80993 5.84785 5.91615 6.01140 6.11613 6.17606 6.41208 6.49483 6.66826 6.69352 6.74776 6.84889 6.91397 6.98212 7.33532 7.43633 7.74327 7.83626 8.01884 8.38203 8.64635 9.23808 9.86466 10.33948 11.33060 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037961 B = 0.003751 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.423095 B = 7462.644003 C = 7798.287098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.099 3.901 3 N -0.555 5.555 4 H 0.413 0.587 5 C -0.025 4.025 6 C -0.174 4.174 7 C -0.225 4.225 8 C 0.600 3.400 9 O -0.559 6.559 10 N -0.607 5.607 11 C 0.103 3.897 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.587 5.587 16 C 0.162 3.838 17 C -0.256 4.256 18 H 0.072 0.928 19 C 0.002 3.998 20 N -0.908 5.908 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.087 3.913 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.000 1.000 37 H 0.046 0.954 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 21.384 0.333 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.019 4.019 3 N -0.151 5.151 4 H 0.249 0.751 5 C -0.152 4.152 6 C -0.198 4.198 7 C -0.235 4.235 8 C 0.391 3.609 9 O -0.440 6.440 10 N -0.339 5.339 11 C -0.020 4.020 12 C -0.194 4.194 13 C 0.062 3.938 14 H 0.095 0.905 15 N -0.308 5.308 16 C 0.017 3.983 17 C -0.385 4.385 18 H 0.089 0.911 19 C -0.196 4.196 20 N -0.553 5.553 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C -0.037 4.037 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.185 0.815 30 H 0.173 0.827 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.027 21.209 0.415 21.428 hybrid contribution 0.118 -0.334 -0.434 0.560 sum -2.909 20.875 -0.019 21.076 Atomic orbital electron populations 1.20558 0.87094 1.04081 1.03356 1.20310 0.93661 0.85629 1.02291 1.41583 1.06313 1.08224 1.58990 0.75077 1.21756 0.85555 0.96540 1.11326 1.22647 0.96572 0.93611 1.06973 1.20163 0.93249 0.92048 1.18028 1.16980 0.84471 0.83402 0.76050 1.90707 1.16307 1.84233 1.52758 1.48181 1.06557 1.06801 1.72385 1.22301 0.80400 0.98709 1.00594 1.23255 0.99937 0.93263 1.02941 1.21398 0.90303 0.84881 0.97170 0.90460 1.43852 1.84410 0.99431 1.03087 1.20817 0.99147 0.96155 0.82140 1.19313 1.33732 0.90568 0.94893 0.91065 1.24967 0.98035 0.98813 0.97818 1.70097 1.36917 1.23416 1.24886 0.86154 0.77376 0.82928 0.79903 1.20294 1.21782 1.21616 1.22960 1.00876 0.78099 1.01768 0.90587 0.92096 0.87949 0.81519 0.82661 0.91611 0.91860 0.90588 0.90615 0.95107 0.98144 0.93510 0.93802 0.91037 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.88 36.00 0.36 -0.62 16 2 C 0.10 1.18 7.17 -81.89 -0.59 0.59 16 3 N -0.56 -4.79 5.90 -9.11 -0.05 -4.84 16 4 H 0.41 2.05 8.96 -40.82 -0.37 1.68 16 5 C -0.02 -0.22 11.89 -16.82 -0.20 -0.42 16 6 C -0.17 -2.05 9.39 -37.50 -0.35 -2.40 16 7 C -0.23 -3.29 6.23 -103.35 -0.64 -3.93 16 8 C 0.60 10.74 7.84 -12.59 -0.10 10.64 16 9 O -0.56 -11.40 15.07 5.26 0.08 -11.32 16 10 N -0.61 -10.60 3.33 -171.86 -0.57 -11.18 16 11 C 0.10 1.51 4.99 -3.06 -0.02 1.50 16 12 C -0.15 -2.64 6.51 -24.89 -0.16 -2.80 16 13 C 0.17 3.55 3.54 -65.79 -0.23 3.31 16 14 H 0.08 1.60 7.94 -51.93 -0.41 1.19 16 15 N -0.59 -14.57 2.96 -171.04 -0.51 -15.07 16 16 C 0.16 3.96 7.59 59.85 0.45 4.41 16 17 C -0.26 -6.98 9.65 -15.06 -0.15 -7.12 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 19 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 20 N -0.91 -26.20 10.51 55.49 0.58 -25.61 16 21 Si 0.91 21.84 29.57 -169.99 -5.03 16.82 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.09 1.71 6.46 -2.54 -0.02 1.69 16 26 H 0.08 0.75 8.14 -51.92 -0.42 0.32 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 1.33 6.47 -51.93 -0.34 0.99 16 29 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.16 1.65 4.79 -52.49 -0.25 1.40 16 31 H 0.07 0.86 6.84 -51.93 -0.36 0.50 16 32 H 0.06 0.83 7.00 -51.93 -0.36 0.47 16 33 H 0.08 1.38 7.08 -51.93 -0.37 1.01 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.03 0.80 7.42 -51.93 -0.39 0.42 16 36 H 0.00 0.00 6.34 -51.93 -0.33 -0.33 16 37 H 0.05 1.24 7.12 -51.93 -0.37 0.87 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 40 H 0.07 1.37 6.33 -51.93 -0.33 1.04 16 LS Contribution 317.88 15.07 4.79 4.79 Total: -1.00 -32.87 317.88 -7.96 -40.83 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.52 Total: 0.78 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -1.73 Total: 4.81 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.55 Total: -56.70 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.87 -7.96 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971298395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.811 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds