Wall clock time and date at job start Mon Mar 30 2020 01:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34660 * 125.79971 * 2 1 4 4 H 0.96995 * 124.85393 * 0.02562 * 3 2 1 5 5 C 1.36448 * 110.29563 * 180.29360 * 3 2 1 6 6 C 1.34492 * 108.85606 * 359.74969 * 5 3 2 7 7 C 1.36764 * 125.80175 * 179.86687 * 2 1 3 8 8 C 1.47269 * 126.94099 * 359.97438 * 7 2 1 9 9 O 1.21624 * 120.00338 * 359.70642 * 8 7 2 10 10 N 1.34777 * 119.99833 * 179.71465 * 8 7 2 11 11 C 1.47022 * 125.64811 * 359.95030 * 10 8 7 12 12 C 1.54327 * 107.27369 * 181.09913 * 11 10 8 13 13 C 1.55162 * 102.93707 * 22.19549 * 12 11 10 14 14 H 1.09004 * 111.03529 * 82.58720 * 13 12 11 15 15 N 1.46505 * 111.00454 * 206.42234 * 13 12 11 16 16 C 1.46498 * 119.99770 * 53.65093 * 15 13 12 17 17 C 1.36929 * 120.00023 * 233.65489 * 15 13 12 18 18 H 1.08001 * 120.00398 * 340.18532 * 17 15 13 19 19 C 1.38811 * 120.00175 * 159.91502 * 17 15 13 20 20 N 1.31615 * 119.99907 * 347.51904 * 19 17 15 21 21 Si 1.86799 * 120.00296 * 167.50951 * 19 17 15 22 22 H 1.48504 * 109.46885 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47148 * 120.00373 * 21 19 17 24 24 H 1.48502 * 109.47586 * 240.00211 * 21 19 17 25 25 C 1.47421 * 125.65028 * 180.02562 * 10 8 7 26 26 H 1.09007 * 109.47316 * 270.13317 * 1 2 3 27 27 H 1.09003 * 109.47234 * 30.13480 * 1 2 3 28 28 H 1.09006 * 109.47539 * 150.13445 * 1 2 3 29 29 H 1.08004 * 125.57248 * 179.76405 * 5 3 2 30 30 H 1.07994 * 126.83054 * 180.02562 * 6 5 3 31 31 H 1.08998 * 109.88888 * 300.51768 * 11 10 8 32 32 H 1.08997 * 109.88310 * 61.53168 * 11 10 8 33 33 H 1.08997 * 110.72016 * 263.83770 * 12 11 10 34 34 H 1.08994 * 110.72078 * 140.55537 * 12 11 10 35 35 H 1.09000 * 109.47115 * 264.84279 * 16 15 13 36 36 H 1.08997 * 109.47201 * 24.84219 * 16 15 13 37 37 H 1.09001 * 109.47050 * 144.84495 * 16 15 13 38 38 H 0.97000 * 120.00684 * 179.97438 * 20 19 17 39 39 H 1.08998 * 110.36529 * 36.98712 * 25 10 8 40 40 H 1.09003 * 110.36380 * 274.67200 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7275 -0.0066 6 6 3.6881 -0.6152 -0.0053 7 6 2.3070 -1.1092 0.0026 8 6 1.8701 -2.5156 0.0064 9 8 0.6839 -2.7839 0.0129 10 7 2.7849 -3.5054 0.0028 11 6 4.2438 -3.3238 -0.0059 12 6 4.8804 -4.7293 -0.0355 13 6 3.7436 -5.6135 -0.6129 14 1 3.7189 -5.5575 -1.7013 15 7 3.8785 -7.0016 -0.1643 16 6 3.9857 -7.3021 1.2656 17 6 3.9045 -8.0181 -1.0813 18 1 3.5153 -7.8582 -2.0760 19 6 4.4362 -9.2525 -0.7344 20 7 5.1323 -9.3808 0.3752 21 14 4.1638 -10.7316 -1.8423 22 1 3.3548 -10.3258 -3.0197 23 1 5.4757 -11.2554 -2.3003 24 1 3.4446 -11.7894 -1.0879 25 6 2.4883 -4.9495 0.0054 26 1 -0.3634 0.0024 1.0277 27 1 -0.3634 0.8888 -0.5159 28 1 -0.3634 -0.8912 -0.5118 29 1 4.4497 1.4060 -0.0116 30 1 4.5889 -1.2109 -0.0090 31 1 4.5424 -2.7630 -0.8916 32 1 4.5565 -2.7916 0.8924 33 1 5.1474 -5.0530 0.9705 34 1 5.7513 -4.7445 -0.6906 35 1 5.0369 -7.3870 1.5412 36 1 3.5229 -6.5004 1.8410 37 1 3.4773 -8.2424 1.4783 38 1 5.5036 -10.2434 0.6180 39 1 1.6095 -5.1573 -0.6050 40 1 2.3354 -5.3035 1.0249 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971298395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:06 Heat of formation + Delta-G solvation = 24.347383 kcal Electronic energy + Delta-G solvation = -21659.322593 eV Core-core repulsion = 18475.052785 eV Total energy + Delta-G solvation = -3184.269809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.17895 -40.57483 -38.68255 -36.55575 -33.56375 -32.42490 -32.08972 -31.17334 -29.29740 -28.07235 -27.34375 -25.42205 -24.04844 -22.53692 -21.59798 -20.88911 -19.44174 -18.94557 -18.47164 -17.49241 -17.10514 -16.44764 -16.21061 -15.72352 -15.27005 -14.98791 -14.73704 -14.53955 -14.35415 -14.17686 -14.00563 -13.70927 -13.50758 -13.39373 -13.32752 -12.86928 -12.81042 -12.48530 -12.40383 -12.20347 -12.10261 -12.05337 -11.76926 -11.43267 -10.86080 -10.64001 -9.80562 -9.59315 -9.03769 -8.80649 -7.82488 -5.29174 0.76675 1.47542 1.49535 1.59610 1.60097 2.02031 2.45732 2.54012 2.57805 3.29842 3.56492 3.77003 3.95705 3.96675 4.17847 4.21594 4.32200 4.35250 4.39310 4.49555 4.64512 4.72253 4.74542 4.80135 4.91133 4.99880 5.02503 5.08984 5.23436 5.29759 5.32150 5.35114 5.47091 5.63900 5.73450 5.83301 6.04128 6.31147 6.66460 6.74658 7.14508 7.30286 7.84968 8.28297 9.20962 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037961 B = 0.003751 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.423095 B = 7462.644003 C = 7798.287098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.536 5.536 4 H 0.434 0.566 5 C 0.000 4.000 6 C -0.198 4.198 7 C -0.267 4.267 8 C 0.591 3.409 9 O -0.598 6.598 10 N -0.611 5.611 11 C 0.113 3.887 12 C -0.142 4.142 13 C 0.167 3.833 14 H 0.073 0.927 15 N -0.603 5.603 16 C 0.181 3.819 17 C -0.266 4.266 18 H 0.072 0.928 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.292 1.292 25 C 0.099 3.901 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.211 0.789 30 H 0.164 0.836 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.011 0.989 36 H 0.024 0.976 37 H 0.016 0.984 38 H 0.248 0.752 39 H 0.051 0.949 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.586 24.508 -0.240 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.021 4.021 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.128 4.128 6 C -0.221 4.221 7 C -0.277 4.277 8 C 0.385 3.615 9 O -0.482 6.482 10 N -0.343 5.343 11 C -0.009 4.009 12 C -0.182 4.182 13 C 0.058 3.942 14 H 0.091 0.909 15 N -0.324 5.324 16 C 0.037 3.963 17 C -0.396 4.396 18 H 0.090 0.910 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.798 3.202 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.219 1.219 25 C -0.026 4.026 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.227 0.773 30 H 0.181 0.819 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.030 0.970 36 H 0.042 0.958 37 H 0.035 0.965 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.171 24.408 -0.172 24.505 hybrid contribution -0.195 -1.171 -0.261 1.215 sum -2.365 23.237 -0.432 23.361 Atomic orbital electron populations 1.20519 0.86592 1.04177 1.03613 1.20420 0.94262 0.86082 1.01378 1.41590 1.06032 1.08541 1.57160 0.72610 1.22370 0.86384 0.96177 1.07855 1.22788 0.95467 0.95049 1.08771 1.20108 0.95598 0.90536 1.21443 1.17629 0.83964 0.84837 0.75119 1.90674 1.17910 1.85030 1.54591 1.48237 1.07883 1.05567 1.72608 1.22392 0.78338 0.97261 1.02878 1.23104 0.99049 0.93872 1.02186 1.21505 0.92053 0.83483 0.97126 0.90878 1.44001 1.84749 1.00888 1.02795 1.20495 0.97638 0.95516 0.82685 1.19613 1.33125 0.91611 0.95267 0.91044 1.25697 0.98252 1.01226 0.99305 1.70244 1.37979 1.23636 1.26426 0.85169 0.77131 0.79505 0.78410 1.19323 1.21632 1.21942 1.22585 0.99645 0.80044 1.00332 0.90237 0.88697 0.91088 0.77273 0.81862 0.89215 0.89584 0.91578 0.89481 0.97034 0.95774 0.96484 0.94213 0.93009 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.79 9.88 71.24 0.70 -1.09 16 2 C 0.10 2.14 7.17 41.78 0.30 2.44 16 3 N -0.54 -7.03 5.90 -182.72 -1.08 -8.11 16 4 H 0.43 2.22 8.96 -92.71 -0.83 1.39 16 5 C 0.00 0.00 11.89 83.12 0.99 0.98 16 6 C -0.20 -4.01 9.39 23.62 0.22 -3.79 16 7 C -0.27 -7.41 6.23 -19.04 -0.12 -7.53 16 8 C 0.59 21.32 7.84 86.62 0.68 22.00 16 9 O -0.60 -25.35 15.07 -4.11 -0.06 -25.41 16 10 N -0.61 -21.27 3.33 -815.89 -2.71 -23.98 16 11 C 0.11 3.11 4.99 86.73 0.43 3.55 16 12 C -0.14 -4.75 6.51 31.79 0.21 -4.54 16 13 C 0.17 6.92 3.54 46.38 0.16 7.08 16 14 H 0.07 3.06 7.94 -2.38 -0.02 3.04 16 15 N -0.60 -30.53 2.96 -695.06 -2.06 -32.59 16 16 C 0.18 9.13 7.59 127.77 0.97 10.10 16 17 C -0.27 -14.77 9.65 84.03 0.81 -13.96 16 18 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 19 C -0.05 -2.80 5.12 84.86 0.43 -2.36 16 20 N -0.94 -55.21 10.51 21.65 0.23 -54.98 16 21 Si 0.97 45.50 29.57 68.60 2.03 47.53 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 C 0.10 3.99 6.46 86.85 0.56 4.55 16 26 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.88 6.47 -2.38 -0.02 1.87 16 29 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.16 2.89 4.79 -2.91 -0.01 2.88 16 31 H 0.09 2.08 6.84 -2.39 -0.02 2.07 16 32 H 0.09 2.03 7.00 -2.39 -0.02 2.01 16 33 H 0.07 2.35 7.08 -2.39 -0.02 2.34 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 35 H 0.01 0.61 7.42 -2.39 -0.02 0.60 16 36 H 0.02 1.07 6.34 -2.39 -0.02 1.05 16 37 H 0.02 0.92 7.12 -2.39 -0.02 0.90 16 38 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 39 H 0.05 2.25 8.04 -2.39 -0.02 2.23 16 40 H 0.05 2.26 6.33 -2.39 -0.02 2.24 16 Total: -1.00 -74.10 317.88 2.93 -71.17 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.23 Total: 8.95 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.35 Total: 17.43 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.63 Total: -119.66 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.06 Total: -25.41 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -74.10 2.93 -71.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971298395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.516 kcal (2) G-P(sol) polarization free energy of solvation -74.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds