Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34653 * 125.80070 * 2 1 4 4 H 0.97000 * 124.85155 * 359.96516 * 3 2 1 5 5 C 1.36451 * 110.30021 * 179.82765 * 3 2 1 6 6 C 1.34491 * 108.85354 * 0.44058 * 5 3 2 7 7 C 1.36774 * 125.79990 * 180.30801 * 2 1 3 8 8 C 1.47265 * 126.94372 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99703 * 336.63260 * 8 7 2 10 10 N 1.34770 * 119.99799 * 156.63557 * 8 7 2 11 11 C 1.47425 * 125.65156 * 3.83828 * 10 8 7 12 12 C 1.54914 * 104.83318 * 204.09586 * 11 10 8 13 13 C 1.55161 * 101.57743 * 322.98783 * 12 11 10 14 14 H 1.08993 * 110.71951 * 276.95990 * 13 12 11 15 15 N 1.46506 * 110.71700 * 153.86727 * 13 12 11 16 16 C 1.46504 * 119.99687 * 300.00510 * 15 13 12 17 17 C 1.36937 * 119.99937 * 119.99722 * 15 13 12 18 18 H 1.07991 * 120.00124 * 320.05339 * 17 15 13 19 19 C 1.38814 * 119.99431 * 140.05479 * 17 15 13 20 20 N 1.31616 * 119.99722 * 157.77500 * 19 17 15 21 21 Si 1.86804 * 120.00093 * 337.76998 * 19 17 15 22 22 H 1.48501 * 109.47060 * 95.23697 * 21 19 17 23 23 H 1.48500 * 109.46691 * 215.23462 * 21 19 17 24 24 H 1.48495 * 109.47278 * 335.23576 * 21 19 17 25 25 C 1.47019 * 125.64636 * 183.53437 * 10 8 7 26 26 H 1.09000 * 109.46757 * 269.68907 * 1 2 3 27 27 H 1.08996 * 109.47285 * 29.68720 * 1 2 3 28 28 H 1.09001 * 109.47147 * 149.69406 * 1 2 3 29 29 H 1.07995 * 125.57664 * 180.18162 * 5 3 2 30 30 H 1.07999 * 126.83374 * 179.78014 * 6 5 3 31 31 H 1.09003 * 110.36737 * 322.93417 * 11 10 8 32 32 H 1.09003 * 110.36517 * 85.14509 * 11 10 8 33 33 H 1.08997 * 111.00247 * 81.06393 * 12 11 10 34 34 H 1.09000 * 111.00183 * 204.87997 * 12 11 10 35 35 H 1.08998 * 109.47269 * 84.75256 * 16 15 13 36 36 H 1.09000 * 109.46597 * 204.75169 * 16 15 13 37 37 H 1.08999 * 109.47243 * 324.74717 * 16 15 13 38 38 H 0.97002 * 120.00106 * 179.97438 * 20 19 17 39 39 H 1.09000 * 109.88330 * 298.39074 * 25 10 8 40 40 H 1.09006 * 109.88693 * 59.55833 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 -0.0005 5 6 3.6096 0.7275 0.0038 6 6 3.6883 -0.6151 -0.0034 7 6 2.3071 -1.1093 -0.0060 8 6 1.8702 -2.5156 -0.0141 9 8 0.7663 -2.8118 0.4017 10 7 2.6937 -3.4743 -0.4820 11 6 4.0802 -3.2683 -0.9389 12 6 4.3566 -4.4434 -1.9097 13 6 3.5941 -5.6045 -1.2183 14 1 4.2032 -6.0523 -0.4332 15 7 3.1902 -6.6156 -2.1986 16 6 2.3061 -6.2485 -3.3076 17 6 3.6392 -7.9036 -2.0784 18 1 4.6587 -8.0942 -1.7774 19 6 2.7839 -8.9643 -2.3435 20 7 3.2760 -10.1435 -2.6591 21 14 0.9344 -8.7181 -2.2521 22 1 0.4068 -8.4224 -3.6084 23 1 0.2958 -9.9534 -1.7310 24 1 0.6304 -7.5829 -1.3444 25 6 2.3603 -4.9000 -0.6156 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 0.8927 -0.5089 28 1 -0.3633 -0.8872 -0.5186 29 1 4.4497 1.4060 0.0075 30 1 4.5891 -1.2109 -0.0060 31 1 4.1700 -2.3157 -1.4610 32 1 4.7673 -3.3029 -0.0934 33 1 3.9445 -4.2390 -2.8978 34 1 5.4237 -4.6574 -1.9703 35 1 2.8993 -5.8384 -4.1249 36 1 1.7720 -7.1331 -3.6546 37 1 1.5889 -5.5009 -2.9684 38 1 2.6784 -10.8848 -2.8440 39 1 2.1324 -5.3208 0.3637 40 1 1.5053 -5.0200 -1.2811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971298396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = 45.695950 kcal Electronic energy + Delta-G solvation = -21863.733100 eV Core-core repulsion = 18680.389035 eV Total energy + Delta-G solvation = -3183.344065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.34670 -39.29569 -37.26310 -34.86349 -31.98564 -31.65340 -31.15552 -30.00319 -28.08037 -26.53435 -26.11538 -24.06166 -22.43641 -21.51175 -20.77470 -19.19978 -18.38047 -17.69604 -17.03834 -16.08586 -15.84139 -15.14528 -15.07472 -14.63498 -13.87115 -13.74879 -13.53568 -13.32381 -13.23658 -12.82156 -12.76865 -12.68290 -12.29127 -12.21577 -11.96172 -11.76591 -11.64411 -11.50649 -10.83791 -10.68806 -10.51812 -10.14456 -9.92933 -9.63145 -9.57662 -8.91162 -8.51422 -8.40434 -8.08631 -6.80137 -6.02415 -3.47395 1.79559 2.34368 2.96552 3.34133 3.45171 3.49953 3.58056 3.65740 4.52920 4.70329 4.79521 4.92720 5.00459 5.06738 5.16573 5.28289 5.39368 5.48224 5.54142 5.56213 5.74792 5.78004 5.84968 5.87638 5.99457 6.06222 6.21044 6.37655 6.41543 6.50096 6.61089 6.66759 6.72852 6.76273 6.87535 6.89590 7.29135 7.94591 8.03775 8.37422 8.58608 8.95555 9.67777 10.09515 11.12533 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.004463 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.858903 B = 6272.454510 C = 6848.665450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.095 3.905 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.223 4.223 8 C 0.598 3.402 9 O -0.555 6.555 10 N -0.607 5.607 11 C 0.100 3.900 12 C -0.151 4.151 13 C 0.169 3.831 14 H 0.087 0.913 15 N -0.595 5.595 16 C 0.108 3.892 17 C -0.275 4.275 18 H 0.080 0.920 19 C 0.041 3.959 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.286 1.286 23 H -0.300 1.300 24 H -0.266 1.266 25 C 0.085 3.915 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.150 0.850 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.017 0.983 36 H 0.049 0.951 37 H 0.030 0.970 38 H 0.264 0.736 39 H 0.062 0.938 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 23.835 3.864 24.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.022 4.022 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.193 4.193 7 C -0.232 4.232 8 C 0.389 3.611 9 O -0.436 6.436 10 N -0.340 5.340 11 C -0.024 4.024 12 C -0.191 4.191 13 C 0.060 3.940 14 H 0.105 0.895 15 N -0.317 5.317 16 C -0.037 4.037 17 C -0.404 4.404 18 H 0.098 0.902 19 C -0.160 4.160 20 N -0.537 5.537 21 Si 0.706 3.294 22 H -0.214 1.214 23 H -0.228 1.228 24 H -0.191 1.191 25 C -0.039 4.039 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.185 0.815 30 H 0.168 0.832 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.233 23.620 4.046 23.965 hybrid contribution -1.051 0.449 0.010 1.143 sum -1.284 24.069 4.055 24.442 Atomic orbital electron populations 1.20452 0.87161 1.03479 1.03491 1.20256 0.93601 0.85645 1.02717 1.41546 1.06259 1.08217 1.59032 0.75011 1.21727 0.85586 0.96466 1.11168 1.22330 0.96120 0.93507 1.07392 1.20153 0.93351 0.91993 1.17748 1.17039 0.83503 0.83510 0.77055 1.90744 1.21332 1.83005 1.48474 1.48264 1.14131 1.08467 1.63153 1.22544 0.82722 0.99709 0.97403 1.23312 1.01587 0.95348 0.98890 1.21552 0.92184 0.88658 0.91559 0.89454 1.44027 1.56936 1.06869 1.23900 1.21330 0.93291 0.98559 0.90476 1.18771 0.95766 0.79856 1.45992 0.90227 1.25546 0.97925 0.94891 0.97678 1.69868 1.35225 1.02162 1.46444 0.86924 0.87333 0.77161 0.77943 1.21356 1.22751 1.19055 1.22778 1.01041 0.78944 1.01151 0.90277 0.91988 0.88975 0.81459 0.83201 0.90431 0.91710 0.90850 0.90235 0.96468 0.93215 0.95166 0.92592 0.91912 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.75 36.01 0.35 -0.56 16 2 C 0.10 1.11 7.17 -81.88 -0.59 0.53 16 3 N -0.55 -4.58 5.90 -9.11 -0.05 -4.64 16 4 H 0.41 1.93 8.96 -40.82 -0.37 1.56 16 5 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 6 C -0.17 -1.89 9.06 -37.49 -0.34 -2.23 16 7 C -0.22 -3.17 6.00 -103.35 -0.62 -3.79 16 8 C 0.60 10.63 7.71 -12.59 -0.10 10.53 16 9 O -0.56 -11.53 15.80 5.26 0.08 -11.44 16 10 N -0.61 -10.40 3.33 -171.83 -0.57 -10.97 16 11 C 0.10 1.36 5.28 -2.53 -0.01 1.35 16 12 C -0.15 -2.37 6.66 -24.58 -0.16 -2.54 16 13 C 0.17 3.32 3.43 -66.09 -0.23 3.09 16 14 H 0.09 1.72 7.95 -51.93 -0.41 1.31 16 15 N -0.60 -14.03 2.44 -171.38 -0.42 -14.45 16 16 C 0.11 2.39 8.33 59.85 0.50 2.89 16 17 C -0.28 -7.61 9.83 -15.06 -0.15 -7.76 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 19 C 0.04 1.18 5.25 -17.43 -0.09 1.09 16 20 N -0.90 -27.21 13.97 55.49 0.78 -26.44 16 21 Si 0.88 22.53 25.18 -169.99 -4.28 18.25 16 22 H -0.29 -7.15 6.69 56.52 0.38 -6.77 16 23 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.09 1.67 6.47 -3.06 -0.02 1.65 16 26 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.09 1.17 7.13 -51.93 -0.37 0.80 16 29 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.15 1.47 5.91 -52.49 -0.31 1.16 16 31 H 0.08 0.94 6.01 -51.93 -0.31 0.63 16 32 H 0.06 0.78 7.79 -51.93 -0.40 0.38 16 33 H 0.07 1.20 7.16 -51.93 -0.37 0.83 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.35 7.89 -51.93 -0.41 -0.06 16 36 H 0.05 1.19 3.86 -51.93 -0.20 0.99 16 37 H 0.03 0.62 6.07 -51.93 -0.32 0.31 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.48 5.90 -51.93 -0.31 1.17 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -34.18 316.00 -6.84 -41.02 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.47 Total: 0.05 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.66 Total: 3.86 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.27 Total: -56.49 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.28 Total: 18.25 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.18 -6.84 -41.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971298396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.713 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds