Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34653 * 125.80070 * 2 1 4 4 H 0.97000 * 124.85155 * 359.96516 * 3 2 1 5 5 C 1.36451 * 110.30021 * 179.82765 * 3 2 1 6 6 C 1.34491 * 108.85354 * 0.44058 * 5 3 2 7 7 C 1.36774 * 125.79990 * 180.30801 * 2 1 3 8 8 C 1.47265 * 126.94372 * 0.02562 * 7 2 1 9 9 O 1.21622 * 119.99703 * 336.63260 * 8 7 2 10 10 N 1.34770 * 119.99799 * 156.63557 * 8 7 2 11 11 C 1.47425 * 125.65156 * 3.83828 * 10 8 7 12 12 C 1.54914 * 104.83318 * 204.09586 * 11 10 8 13 13 C 1.55161 * 101.57743 * 322.98783 * 12 11 10 14 14 H 1.08993 * 110.71951 * 276.95990 * 13 12 11 15 15 N 1.46506 * 110.71700 * 153.86727 * 13 12 11 16 16 C 1.46504 * 119.99687 * 300.00510 * 15 13 12 17 17 C 1.36937 * 119.99937 * 119.99722 * 15 13 12 18 18 H 1.07991 * 120.00124 * 320.05339 * 17 15 13 19 19 C 1.38814 * 119.99431 * 140.05479 * 17 15 13 20 20 N 1.31616 * 119.99722 * 157.77500 * 19 17 15 21 21 Si 1.86804 * 120.00093 * 337.76998 * 19 17 15 22 22 H 1.48501 * 109.47060 * 95.23697 * 21 19 17 23 23 H 1.48500 * 109.46691 * 215.23462 * 21 19 17 24 24 H 1.48495 * 109.47278 * 335.23576 * 21 19 17 25 25 C 1.47019 * 125.64636 * 183.53437 * 10 8 7 26 26 H 1.09000 * 109.46757 * 269.68907 * 1 2 3 27 27 H 1.08996 * 109.47285 * 29.68720 * 1 2 3 28 28 H 1.09001 * 109.47147 * 149.69406 * 1 2 3 29 29 H 1.07995 * 125.57664 * 180.18162 * 5 3 2 30 30 H 1.07999 * 126.83374 * 179.78014 * 6 5 3 31 31 H 1.09003 * 110.36737 * 322.93417 * 11 10 8 32 32 H 1.09003 * 110.36517 * 85.14509 * 11 10 8 33 33 H 1.08997 * 111.00247 * 81.06393 * 12 11 10 34 34 H 1.09000 * 111.00183 * 204.87997 * 12 11 10 35 35 H 1.08998 * 109.47269 * 84.75256 * 16 15 13 36 36 H 1.09000 * 109.46597 * 204.75169 * 16 15 13 37 37 H 1.08999 * 109.47243 * 324.74717 * 16 15 13 38 38 H 0.97002 * 120.00106 * 179.97438 * 20 19 17 39 39 H 1.09000 * 109.88330 * 298.39074 * 25 10 8 40 40 H 1.09006 * 109.88693 * 59.55833 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0073 -0.0005 5 6 3.6096 0.7275 0.0038 6 6 3.6883 -0.6151 -0.0034 7 6 2.3071 -1.1093 -0.0060 8 6 1.8702 -2.5156 -0.0141 9 8 0.7663 -2.8118 0.4017 10 7 2.6937 -3.4743 -0.4820 11 6 4.0802 -3.2683 -0.9389 12 6 4.3566 -4.4434 -1.9097 13 6 3.5941 -5.6045 -1.2183 14 1 4.2032 -6.0523 -0.4332 15 7 3.1902 -6.6156 -2.1986 16 6 2.3061 -6.2485 -3.3076 17 6 3.6392 -7.9036 -2.0784 18 1 4.6587 -8.0942 -1.7774 19 6 2.7839 -8.9643 -2.3435 20 7 3.2760 -10.1435 -2.6591 21 14 0.9344 -8.7181 -2.2521 22 1 0.4068 -8.4224 -3.6084 23 1 0.2958 -9.9534 -1.7310 24 1 0.6304 -7.5829 -1.3444 25 6 2.3603 -4.9000 -0.6156 26 1 -0.3633 -0.0056 1.0277 27 1 -0.3633 0.8927 -0.5089 28 1 -0.3633 -0.8872 -0.5186 29 1 4.4497 1.4060 0.0075 30 1 4.5891 -1.2109 -0.0060 31 1 4.1700 -2.3157 -1.4610 32 1 4.7673 -3.3029 -0.0934 33 1 3.9445 -4.2390 -2.8978 34 1 5.4237 -4.6574 -1.9703 35 1 2.8993 -5.8384 -4.1249 36 1 1.7720 -7.1331 -3.6546 37 1 1.5889 -5.5009 -2.9684 38 1 2.6784 -10.8848 -2.8440 39 1 2.1324 -5.3208 0.3637 40 1 1.5053 -5.0200 -1.2811 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971298396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = 21.728188 kcal Electronic energy + Delta-G solvation = -21864.772420 eV Core-core repulsion = 18680.389035 eV Total energy + Delta-G solvation = -3184.383386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18571 -40.62836 -38.77254 -36.59749 -33.86413 -32.49941 -32.31352 -31.35368 -29.50105 -28.10892 -27.37029 -25.57531 -23.98682 -22.63588 -21.60313 -20.82249 -19.50908 -19.04364 -18.50874 -17.71276 -17.17611 -16.78487 -16.26993 -15.87910 -15.39384 -14.99937 -14.74612 -14.63827 -14.53482 -14.28613 -14.20809 -13.79528 -13.63147 -13.47343 -13.44003 -13.20128 -13.05920 -12.59501 -12.51058 -12.37275 -12.20902 -12.08097 -11.70254 -11.48646 -10.94897 -10.66973 -9.79905 -9.58521 -9.04533 -8.75850 -8.24901 -5.65765 0.79111 1.26773 1.38874 1.50141 1.59294 1.98477 2.37980 2.44781 2.48695 3.02167 3.30798 3.70456 3.83951 3.93800 4.15379 4.25499 4.28851 4.32884 4.38268 4.47953 4.51760 4.65001 4.67948 4.70855 4.76348 4.90718 4.96683 4.99872 5.00625 5.07306 5.21621 5.26438 5.33926 5.41545 5.82310 5.91400 6.02997 6.17685 6.63728 6.73453 6.93319 7.26582 7.56329 8.01722 8.94234 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.004463 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.858903 B = 6272.454510 C = 6848.665450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.093 3.907 3 N -0.536 5.536 4 H 0.434 0.566 5 C 0.002 3.998 6 C -0.191 4.191 7 C -0.263 4.263 8 C 0.590 3.410 9 O -0.601 6.601 10 N -0.610 5.610 11 C 0.107 3.893 12 C -0.138 4.138 13 C 0.164 3.836 14 H 0.082 0.918 15 N -0.608 5.608 16 C 0.109 3.891 17 C -0.262 4.262 18 H 0.054 0.946 19 C -0.007 4.007 20 N -0.940 5.940 21 Si 0.932 3.068 22 H -0.274 1.274 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.094 3.906 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.212 0.788 30 H 0.161 0.839 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.036 0.964 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.044 0.956 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 27.854 3.750 28.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.027 4.027 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.125 4.125 6 C -0.214 4.214 7 C -0.274 4.274 8 C 0.383 3.617 9 O -0.484 6.484 10 N -0.342 5.342 11 C -0.015 4.015 12 C -0.178 4.178 13 C 0.056 3.944 14 H 0.100 0.900 15 N -0.331 5.331 16 C -0.035 4.035 17 C -0.392 4.392 18 H 0.071 0.929 19 C -0.205 4.205 20 N -0.584 5.584 21 Si 0.761 3.239 22 H -0.201 1.201 23 H -0.233 1.233 24 H -0.195 1.195 25 C -0.031 4.031 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.228 0.772 30 H 0.179 0.821 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.678 27.720 3.926 28.005 hybrid contribution -1.262 -0.667 0.086 1.429 sum -0.584 27.054 4.012 27.356 Atomic orbital electron populations 1.20418 0.86836 1.03638 1.03523 1.20344 0.94126 0.86177 1.02026 1.41559 1.06038 1.08484 1.57229 0.72603 1.22364 0.86342 0.96152 1.07667 1.22506 0.94975 0.94884 1.09042 1.20084 0.95794 0.90326 1.21152 1.17715 0.82867 0.85031 0.76081 1.90702 1.23282 1.83914 1.50503 1.48321 1.15559 1.07094 1.63258 1.22714 0.81064 0.99831 0.97858 1.23201 1.01921 0.93939 0.98689 1.21650 0.92445 0.88965 0.91312 0.89962 1.44098 1.57270 1.06249 1.25441 1.21324 0.93475 0.98062 0.90616 1.18716 0.94698 0.81718 1.44039 0.92855 1.26046 1.01249 0.94773 0.98424 1.69960 1.36405 1.03098 1.48910 0.86027 0.83206 0.76406 0.78243 1.20060 1.23267 1.19465 1.22414 1.00086 0.81074 0.99525 0.90277 0.88560 0.92060 0.77157 0.82117 0.87908 0.89447 0.91217 0.88393 0.94578 0.95086 0.93847 0.92605 0.93774 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.75 71.24 0.69 -0.99 16 2 C 0.09 1.96 7.17 41.78 0.30 2.26 16 3 N -0.54 -6.57 5.90 -182.72 -1.08 -7.65 16 4 H 0.43 1.92 8.96 -92.71 -0.83 1.09 16 5 C 0.00 0.03 11.89 83.12 0.99 1.02 16 6 C -0.19 -3.58 9.06 23.62 0.21 -3.36 16 7 C -0.26 -7.07 6.00 -19.04 -0.11 -7.18 16 8 C 0.59 20.99 7.71 86.62 0.67 21.66 16 9 O -0.60 -25.83 15.80 -4.10 -0.06 -25.90 16 10 N -0.61 -20.55 3.33 -815.81 -2.71 -23.26 16 11 C 0.11 2.66 5.28 86.86 0.46 3.12 16 12 C -0.14 -4.03 6.66 31.99 0.21 -3.82 16 13 C 0.16 6.37 3.43 46.18 0.16 6.52 16 14 H 0.08 3.25 7.95 -2.39 -0.02 3.23 16 15 N -0.61 -28.64 2.44 -696.12 -1.70 -30.35 16 16 C 0.11 4.77 8.33 127.77 1.06 5.83 16 17 C -0.26 -14.73 9.83 84.03 0.83 -13.91 16 18 H 0.05 3.24 8.06 -2.92 -0.02 3.21 16 19 C -0.01 -0.42 5.25 84.86 0.45 0.03 16 20 N -0.94 -58.48 13.97 21.65 0.30 -58.18 16 21 Si 0.93 47.63 25.18 68.60 1.73 49.36 16 22 H -0.27 -13.33 6.69 99.48 0.67 -12.66 16 23 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 24 H -0.27 -13.80 7.11 99.48 0.71 -13.09 16 25 C 0.09 3.75 6.47 86.73 0.56 4.31 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.59 7.13 -2.39 -0.02 1.57 16 29 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16 30 H 0.16 2.51 5.91 -2.91 -0.02 2.50 16 31 H 0.10 2.11 6.01 -2.39 -0.01 2.10 16 32 H 0.09 1.82 7.79 -2.39 -0.02 1.80 16 33 H 0.07 2.12 7.16 -2.39 -0.02 2.10 16 34 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.04 1.43 7.89 -2.39 -0.02 1.42 16 36 H 0.03 1.46 3.86 -2.39 -0.01 1.45 16 37 H 0.04 1.77 6.07 -2.39 -0.01 1.75 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 2.01 5.90 -2.38 -0.01 2.00 16 Total: -1.00 -77.64 316.00 3.14 -74.49 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.19 Total: 6.00 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.48 Total: 15.48 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -5.19 Total: -119.44 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.06 Total: -25.90 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.73 Total: 49.36 kcal Total: -77.64 3.14 -74.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971298396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.221 kcal (2) G-P(sol) polarization free energy of solvation -77.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds