Wall clock time and date at job start Mon Mar 30 2020 01:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39836 * 126.45692 * 2 1 4 4 C 1.35454 * 107.86712 * 179.97438 * 3 2 1 5 5 N 1.35542 * 108.87016 * 0.02562 * 4 3 2 6 6 H 0.96991 * 125.67563 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64294 * 359.75426 * 5 4 3 8 8 C 1.46675 * 126.23666 * 180.26692 * 7 5 4 9 9 O 1.21692 * 120.00448 * 180.14770 * 8 7 5 10 10 N 1.34784 * 119.99510 * 0.15255 * 8 7 5 11 11 C 1.47022 * 125.64936 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.27049 * 181.02424 * 11 10 8 13 13 C 1.55160 * 102.94082 * 22.19215 * 12 11 10 14 14 H 1.08994 * 111.00690 * 82.61516 * 13 12 11 15 15 N 1.46503 * 111.00218 * 206.42697 * 13 12 11 16 16 C 1.46503 * 120.00134 * 59.99703 * 15 13 12 17 17 C 1.36940 * 119.99599 * 239.99972 * 15 13 12 18 18 H 1.07996 * 120.00108 * 23.24600 * 17 15 13 19 19 C 1.38816 * 119.99845 * 203.24356 * 17 15 13 20 20 N 1.31617 * 119.99671 * 13.76509 * 19 17 15 21 21 Si 1.86797 * 120.00288 * 193.76980 * 19 17 15 22 22 H 1.48505 * 109.46683 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47512 * 119.99519 * 21 19 17 24 24 H 1.48498 * 109.47310 * 240.00259 * 21 19 17 25 25 C 1.47426 * 125.64382 * 179.71508 * 10 8 7 26 26 H 1.08994 * 109.47078 * 90.02694 * 1 2 3 27 27 H 1.09007 * 109.46686 * 210.02392 * 1 2 3 28 28 H 1.09000 * 109.46687 * 330.02304 * 1 2 3 29 29 H 1.08003 * 126.06925 * 359.95851 * 3 2 1 30 30 H 1.07994 * 125.56584 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.87732 * 300.43881 * 11 10 8 32 32 H 1.08991 * 109.88321 * 61.44877 * 11 10 8 33 33 H 1.08999 * 110.72144 * 140.54925 * 12 11 10 34 34 H 1.08994 * 110.71965 * 263.65230 * 12 11 10 35 35 H 1.08999 * 109.47002 * 95.16106 * 16 15 13 36 36 H 1.08998 * 109.46900 * 215.15899 * 16 15 13 37 37 H 1.08999 * 109.47201 * 335.15864 * 16 15 13 38 38 H 0.97006 * 120.00097 * 179.97438 * 20 19 17 39 39 H 1.08999 * 110.36394 * 274.74449 * 25 10 8 40 40 H 1.08989 * 110.37173 * 37.06635 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6285 -0.6625 0.0004 6 1 4.4191 -1.2243 0.0010 7 6 2.3264 -1.1089 0.0052 8 6 1.8899 -2.5092 0.0122 9 8 0.7027 -2.7766 0.0133 10 7 2.8038 -3.4998 0.0175 11 6 4.2629 -3.3196 0.0175 12 6 4.8983 -4.7258 -0.0018 13 6 3.7645 -5.6115 -0.5827 14 1 3.7476 -5.5603 -1.6713 15 7 3.8952 -6.9977 -0.1269 16 6 3.8530 -7.3051 1.3048 17 6 4.0569 -8.0060 -1.0393 18 1 4.4570 -7.7890 -2.0187 19 6 3.7066 -9.3070 -0.7053 20 7 2.9772 -9.5377 0.3657 21 14 4.2704 -10.7302 -1.7758 22 1 5.0713 -10.2079 -2.9120 23 1 5.1025 -11.6578 -0.9681 24 1 3.0852 -11.4562 -2.2987 25 6 2.5058 -4.9436 0.0307 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8899 0.5143 28 1 -0.3633 0.8902 0.5135 29 1 2.0137 2.1549 -0.0006 30 1 4.4972 1.3253 0.0003 31 1 4.5676 -2.7629 -0.8688 32 1 4.5702 -2.7837 0.9154 33 1 5.7735 -4.7447 -0.6513 34 1 5.1614 -5.0440 1.0069 35 1 2.8379 -7.5848 1.5866 36 1 4.5304 -8.1318 1.5190 37 1 4.1594 -6.4275 1.8741 38 1 2.7320 -10.4468 0.5989 39 1 2.3498 -5.2894 1.0525 40 1 1.6286 -5.1555 -0.5804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971446179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:40 Heat of formation + Delta-G solvation = 45.177652 kcal Electronic energy + Delta-G solvation = -21739.297585 eV Core-core repulsion = 18555.931044 eV Total energy + Delta-G solvation = -3183.366541 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44539 -39.27757 -37.38546 -34.95915 -32.64325 -31.69359 -30.06986 -29.79516 -27.81805 -26.85530 -26.11010 -23.92193 -22.61858 -21.28058 -20.75274 -19.43173 -18.91432 -17.51071 -17.11817 -16.10065 -15.97822 -15.03588 -14.90745 -14.38617 -13.87339 -13.73636 -13.49959 -13.29124 -13.07414 -12.72768 -12.63050 -12.47330 -12.40469 -12.23627 -12.06836 -11.58009 -11.54273 -10.97370 -10.85621 -10.56861 -10.56227 -10.35036 -9.96242 -9.91714 -9.71731 -8.84388 -8.66626 -8.51764 -8.10956 -6.86850 -5.81805 -3.30196 1.50286 2.67482 2.99729 3.22510 3.33346 3.40937 3.42717 3.49078 4.41177 4.65084 4.78438 4.90384 5.02216 5.11871 5.13733 5.28824 5.32016 5.52653 5.64980 5.71961 5.77177 5.87383 5.89275 5.91543 6.11157 6.20470 6.26164 6.35898 6.43362 6.53551 6.67998 6.73526 6.79184 6.94569 7.26034 7.31585 7.64090 7.70960 7.73089 8.28477 8.34080 9.12540 9.74644 10.23320 11.22540 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037185 B = 0.003830 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.804913 B = 7308.916849 C = 7650.814686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.081 4.081 3 C -0.212 4.212 4 C 0.015 3.985 5 N -0.544 5.544 6 H 0.418 0.582 7 C -0.049 4.049 8 C 0.597 3.403 9 O -0.530 6.530 10 N -0.615 5.615 11 C 0.094 3.906 12 C -0.152 4.152 13 C 0.174 3.826 14 H 0.079 0.921 15 N -0.583 5.583 16 C 0.158 3.842 17 C -0.264 4.264 18 H 0.071 0.929 19 C 0.007 3.993 20 N -0.902 5.902 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.089 3.911 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.140 0.860 30 H 0.169 0.831 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.002 0.998 38 H 0.254 0.746 39 H 0.070 0.930 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 18.827 0.473 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.237 4.237 4 C -0.121 4.121 5 N -0.145 5.145 6 H 0.260 0.740 7 C -0.162 4.162 8 C 0.387 3.613 9 O -0.407 6.407 10 N -0.349 5.349 11 C -0.030 4.030 12 C -0.192 4.192 13 C 0.063 3.937 14 H 0.098 0.902 15 N -0.304 5.304 16 C 0.014 3.986 17 C -0.393 4.393 18 H 0.089 0.911 19 C -0.193 4.193 20 N -0.546 5.546 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C -0.035 4.035 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.158 0.842 30 H 0.186 0.814 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.237 18.355 0.551 18.647 hybrid contribution 0.824 -0.918 -0.434 1.308 sum 4.061 17.438 0.117 17.905 Atomic orbital electron populations 1.20331 0.89390 1.02779 1.02142 1.19941 0.95869 0.90727 1.02406 1.20771 0.91858 0.98637 1.12436 1.21999 0.99485 0.83301 1.07312 1.42668 1.07700 1.07356 1.56728 0.73966 1.20310 0.83688 0.93580 1.18576 1.16736 0.85123 0.82378 0.77064 1.90805 1.15551 1.82994 1.51336 1.48450 1.05995 1.07710 1.72787 1.22166 0.81260 1.00038 0.99582 1.23226 1.00154 0.92522 1.03300 1.21500 0.89739 0.85209 0.97280 0.90235 1.43866 1.83423 1.00131 1.02932 1.20824 1.00459 0.95066 0.82272 1.19250 1.36592 0.86860 0.96647 0.91128 1.25070 0.97860 0.98357 0.97981 1.70079 1.37774 1.19659 1.27046 0.86157 0.78036 0.82429 0.79722 1.20235 1.21525 1.21605 1.23162 1.01347 0.76840 1.02149 0.91651 0.90096 0.92207 0.84174 0.81404 0.92124 0.92294 0.90355 0.90228 0.94747 0.93859 0.97985 0.93586 0.91172 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.84 36.01 0.35 -0.79 16 2 C -0.08 -1.11 6.21 -104.15 -0.65 -1.75 16 3 C -0.21 -2.31 10.76 -39.98 -0.43 -2.74 16 4 C 0.01 0.14 11.89 -16.91 -0.20 -0.06 16 5 N -0.54 -5.95 5.61 -9.39 -0.05 -6.01 16 6 H 0.42 3.72 4.92 -40.82 -0.20 3.52 16 7 C -0.05 -0.71 6.89 -81.98 -0.56 -1.27 16 8 C 0.60 10.45 7.82 -12.85 -0.10 10.35 16 9 O -0.53 -10.87 15.05 5.20 0.08 -10.80 16 10 N -0.62 -10.14 3.33 -171.92 -0.57 -10.71 16 11 C 0.09 1.19 5.11 -3.06 -0.02 1.17 16 12 C -0.15 -2.26 6.49 -24.89 -0.16 -2.43 16 13 C 0.17 3.36 3.55 -65.66 -0.23 3.13 16 14 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 15 N -0.58 -13.88 2.96 -170.89 -0.51 -14.39 16 16 C 0.16 3.71 7.56 59.85 0.45 4.16 16 17 C -0.26 -6.98 9.60 -15.06 -0.14 -7.13 16 18 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 19 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 20 N -0.90 -25.71 10.77 55.49 0.60 -25.11 16 21 Si 0.91 21.30 29.58 -169.99 -5.03 16.27 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.09 1.71 6.46 -2.41 -0.02 1.69 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.21 6.47 -51.92 -0.34 0.87 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 30 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.06 0.65 7.08 -51.93 -0.37 0.28 16 32 H 0.06 0.63 7.23 -51.93 -0.38 0.26 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.24 6.47 -51.93 -0.34 0.90 16 35 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 36 H 0.04 1.09 7.38 -51.93 -0.38 0.71 16 37 H 0.00 0.03 6.37 -51.93 -0.33 -0.30 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.07 1.44 6.96 -51.93 -0.36 1.08 16 40 H 0.08 1.62 8.03 -51.94 -0.42 1.20 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -31.55 318.80 -8.04 -39.59 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.56 Total: 1.92 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.80 Total: 4.43 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.53 Total: -56.22 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.55 -8.04 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971446179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.766 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds