Wall clock time and date at job start Mon Mar 30 2020 01:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39836 * 126.45692 * 2 1 4 4 C 1.35454 * 107.86712 * 179.97438 * 3 2 1 5 5 N 1.35542 * 108.87016 * 0.02562 * 4 3 2 6 6 H 0.96991 * 125.67563 * 180.02562 * 5 4 3 7 7 C 1.37650 * 108.64294 * 359.75426 * 5 4 3 8 8 C 1.46675 * 126.23666 * 180.26692 * 7 5 4 9 9 O 1.21692 * 120.00448 * 180.14770 * 8 7 5 10 10 N 1.34784 * 119.99510 * 0.15255 * 8 7 5 11 11 C 1.47022 * 125.64936 * 0.02562 * 10 8 7 12 12 C 1.54325 * 107.27049 * 181.02424 * 11 10 8 13 13 C 1.55160 * 102.94082 * 22.19215 * 12 11 10 14 14 H 1.08994 * 111.00690 * 82.61516 * 13 12 11 15 15 N 1.46503 * 111.00218 * 206.42697 * 13 12 11 16 16 C 1.46503 * 120.00134 * 59.99703 * 15 13 12 17 17 C 1.36940 * 119.99599 * 239.99972 * 15 13 12 18 18 H 1.07996 * 120.00108 * 23.24600 * 17 15 13 19 19 C 1.38816 * 119.99845 * 203.24356 * 17 15 13 20 20 N 1.31617 * 119.99671 * 13.76509 * 19 17 15 21 21 Si 1.86797 * 120.00288 * 193.76980 * 19 17 15 22 22 H 1.48505 * 109.46683 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47512 * 119.99519 * 21 19 17 24 24 H 1.48498 * 109.47310 * 240.00259 * 21 19 17 25 25 C 1.47426 * 125.64382 * 179.71508 * 10 8 7 26 26 H 1.08994 * 109.47078 * 90.02694 * 1 2 3 27 27 H 1.09007 * 109.46686 * 210.02392 * 1 2 3 28 28 H 1.09000 * 109.46687 * 330.02304 * 1 2 3 29 29 H 1.08003 * 126.06925 * 359.95851 * 3 2 1 30 30 H 1.07994 * 125.56584 * 179.97438 * 4 3 2 31 31 H 1.09004 * 109.87732 * 300.43881 * 11 10 8 32 32 H 1.08991 * 109.88321 * 61.44877 * 11 10 8 33 33 H 1.08999 * 110.72144 * 140.54925 * 12 11 10 34 34 H 1.08994 * 110.71965 * 263.65230 * 12 11 10 35 35 H 1.08999 * 109.47002 * 95.16106 * 16 15 13 36 36 H 1.08998 * 109.46900 * 215.15899 * 16 15 13 37 37 H 1.08999 * 109.47201 * 335.15864 * 16 15 13 38 38 H 0.97006 * 120.00097 * 179.97438 * 20 19 17 39 39 H 1.08999 * 110.36394 * 274.74449 * 25 10 8 40 40 H 1.08989 * 110.37173 * 37.06635 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6285 -0.6625 0.0004 6 1 4.4191 -1.2243 0.0010 7 6 2.3264 -1.1089 0.0052 8 6 1.8899 -2.5092 0.0122 9 8 0.7027 -2.7766 0.0133 10 7 2.8038 -3.4998 0.0175 11 6 4.2629 -3.3196 0.0175 12 6 4.8983 -4.7258 -0.0018 13 6 3.7645 -5.6115 -0.5827 14 1 3.7476 -5.5603 -1.6713 15 7 3.8952 -6.9977 -0.1269 16 6 3.8530 -7.3051 1.3048 17 6 4.0569 -8.0060 -1.0393 18 1 4.4570 -7.7890 -2.0187 19 6 3.7066 -9.3070 -0.7053 20 7 2.9772 -9.5377 0.3657 21 14 4.2704 -10.7302 -1.7758 22 1 5.0713 -10.2079 -2.9120 23 1 5.1025 -11.6578 -0.9681 24 1 3.0852 -11.4562 -2.2987 25 6 2.5058 -4.9436 0.0307 26 1 -0.3633 -0.0005 -1.0276 27 1 -0.3633 -0.8899 0.5143 28 1 -0.3633 0.8902 0.5135 29 1 2.0137 2.1549 -0.0006 30 1 4.4972 1.3253 0.0003 31 1 4.5676 -2.7629 -0.8688 32 1 4.5702 -2.7837 0.9154 33 1 5.7735 -4.7447 -0.6513 34 1 5.1614 -5.0440 1.0069 35 1 2.8379 -7.5848 1.5866 36 1 4.5304 -8.1318 1.5190 37 1 4.1594 -6.4275 1.8741 38 1 2.7320 -10.4468 0.5989 39 1 2.3498 -5.2894 1.0525 40 1 1.6286 -5.1555 -0.5804 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971446179.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:39 Heat of formation + Delta-G solvation = 24.884749 kcal Electronic energy + Delta-G solvation = -21740.177551 eV Core-core repulsion = 18555.931044 eV Total energy + Delta-G solvation = -3184.246507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.40730 -40.56518 -38.84815 -36.67926 -33.82784 -33.24677 -31.54801 -30.87620 -29.18496 -28.11149 -27.89781 -25.43087 -24.12066 -22.35344 -21.74638 -21.01161 -19.90682 -18.98640 -18.65842 -17.60479 -17.22088 -16.58687 -16.24072 -15.75763 -15.20358 -15.04499 -14.78662 -14.54454 -14.42426 -14.27377 -13.91916 -13.77468 -13.60324 -13.50385 -13.16777 -13.10828 -12.82684 -12.57042 -12.50902 -12.43755 -12.21729 -12.08481 -11.84632 -11.51216 -11.07675 -10.67934 -9.89562 -9.66529 -9.09285 -8.82852 -7.86423 -5.37174 0.45140 1.46292 1.47790 1.58125 1.80056 1.84829 2.28958 2.29878 2.50166 3.25055 3.44790 3.54983 3.79946 3.98124 4.03789 4.19164 4.23280 4.28012 4.33916 4.44064 4.46421 4.73224 4.76391 4.87795 4.88255 4.90678 4.97722 5.11598 5.14511 5.19643 5.24276 5.37015 5.45984 5.62462 5.67889 5.81253 6.00396 6.28492 6.44428 6.58226 7.02688 7.10398 7.80144 8.24499 9.16444 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037185 B = 0.003830 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.804913 B = 7308.916849 C = 7650.814686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.093 4.093 3 C -0.227 4.227 4 C 0.049 3.951 5 N -0.535 5.535 6 H 0.428 0.572 7 C -0.086 4.086 8 C 0.590 3.410 9 O -0.578 6.578 10 N -0.617 5.617 11 C 0.096 3.904 12 C -0.136 4.136 13 C 0.166 3.834 14 H 0.075 0.925 15 N -0.599 5.599 16 C 0.176 3.824 17 C -0.269 4.269 18 H 0.077 0.923 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.099 3.901 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.165 0.835 30 H 0.219 0.781 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.000 1.000 36 H 0.019 0.981 37 H 0.035 0.965 38 H 0.249 0.751 39 H 0.052 0.948 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.762 22.013 -0.167 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.251 4.251 4 C -0.088 4.088 5 N -0.137 5.137 6 H 0.272 0.728 7 C -0.199 4.199 8 C 0.382 3.618 9 O -0.459 6.459 10 N -0.350 5.350 11 C -0.027 4.027 12 C -0.175 4.175 13 C 0.057 3.943 14 H 0.093 0.907 15 N -0.320 5.320 16 C 0.032 3.968 17 C -0.399 4.399 18 H 0.095 0.905 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.223 1.223 25 C -0.026 4.026 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.182 0.818 30 H 0.235 0.765 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.018 0.982 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.193 21.583 -0.105 22.454 hybrid contribution -0.093 -1.734 -0.250 1.754 sum 6.100 19.848 -0.355 20.768 Atomic orbital electron populations 1.20306 0.89869 1.02454 1.01996 1.20287 0.96189 0.91876 1.01885 1.21114 0.92080 0.98955 1.12908 1.22818 1.00592 0.82607 1.02802 1.42625 1.06579 1.08248 1.56208 0.72773 1.19857 0.85739 0.91757 1.22516 1.17260 0.84610 0.83737 0.76150 1.90770 1.17588 1.83927 1.53611 1.48443 1.07805 1.06035 1.72692 1.22386 0.78411 0.99280 1.02593 1.23061 0.99043 0.92268 1.03159 1.21652 0.91577 0.83778 0.97260 0.90698 1.44040 1.83800 1.01545 1.02633 1.20505 0.97854 0.95535 0.82929 1.19628 1.35403 0.87711 0.97123 0.90545 1.25852 0.98473 1.00837 0.99431 1.70253 1.39536 1.19589 1.28939 0.85151 0.77242 0.79260 0.78445 1.18664 1.21652 1.22328 1.22743 1.00229 0.79329 1.00298 0.91733 0.93084 0.89777 0.81786 0.76488 0.89042 0.89239 0.87948 0.90492 0.98217 0.96219 0.94630 0.94218 0.92989 0.93807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.29 9.84 71.24 0.70 -1.59 16 2 C -0.09 -2.39 6.21 -19.56 -0.12 -2.52 16 3 C -0.23 -4.02 10.76 22.01 0.24 -3.78 16 4 C 0.05 0.64 11.89 83.48 0.99 1.63 16 5 N -0.54 -9.47 5.61 -183.62 -1.03 -10.50 16 6 H 0.43 5.46 4.92 -92.71 -0.46 5.00 16 7 C -0.09 -2.38 6.89 40.35 0.28 -2.10 16 8 C 0.59 20.91 7.82 86.44 0.68 21.58 16 9 O -0.58 -25.19 15.05 -4.32 -0.07 -25.25 16 10 N -0.62 -20.07 3.33 -816.05 -2.71 -22.78 16 11 C 0.10 2.12 5.11 86.73 0.44 2.56 16 12 C -0.14 -3.68 6.49 31.78 0.21 -3.47 16 13 C 0.17 6.41 3.55 46.46 0.16 6.57 16 14 H 0.07 2.93 7.96 -2.39 -0.02 2.91 16 15 N -0.60 -28.91 2.96 -694.58 -2.05 -30.97 16 16 C 0.18 8.51 7.56 127.77 0.97 9.48 16 17 C -0.27 -14.34 9.60 84.03 0.81 -13.54 16 18 H 0.08 3.91 7.87 -2.91 -0.02 3.89 16 19 C -0.05 -2.79 5.08 84.86 0.43 -2.35 16 20 N -0.94 -55.44 10.77 21.65 0.23 -55.21 16 21 Si 0.97 44.43 29.58 68.60 2.03 46.46 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 25 C 0.10 3.96 6.46 86.93 0.56 4.52 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.61 6.47 -2.38 -0.02 1.60 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.22 0.69 8.06 -2.91 -0.02 0.66 16 31 H 0.09 1.53 7.08 -2.38 -0.02 1.51 16 32 H 0.09 1.52 7.23 -2.39 -0.02 1.50 16 33 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.08 2.17 6.47 -2.39 -0.02 2.15 16 35 H 0.00 -0.03 7.33 -2.39 -0.02 -0.04 16 36 H 0.02 1.00 7.38 -2.39 -0.02 0.99 16 37 H 0.04 1.43 6.37 -2.39 -0.02 1.42 16 38 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 39 H 0.05 2.24 6.96 -2.39 -0.02 2.22 16 40 H 0.04 1.99 8.03 -2.39 -0.02 1.97 16 Total: -1.00 -73.78 318.80 3.34 -70.44 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.60 Total: 10.81 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.34 Total: 17.00 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -5.56 Total: -119.46 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -73.78 3.34 -70.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971446179.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.328 kcal (2) G-P(sol) polarization free energy of solvation -73.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds