Wall clock time and date at job start Mon Mar 30 2020 02:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 110.77814 * 2 1 4 4 C 1.54320 * 110.72257 * 236.76050 * 2 1 3 5 5 N 1.47020 * 107.27106 * 263.83054 * 4 2 1 6 6 C 1.36933 * 125.65018 * 181.09495 * 5 4 2 7 7 H 1.08002 * 119.99920 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00379 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00112 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00143 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47137 * 89.99895 * 10 8 6 12 12 H 1.48499 * 109.47302 * 209.99798 * 10 8 6 13 13 H 1.48498 * 109.47366 * 329.99789 * 10 8 6 14 14 C 1.47426 * 108.70303 * 1.05576 * 5 4 2 15 15 C 1.54902 * 104.83277 * 335.87661 * 14 5 4 16 16 H 1.08999 * 111.00349 * 155.12332 * 15 14 5 17 17 N 1.46505 * 111.00274 * 278.93067 * 15 14 5 18 18 C 1.34774 * 120.00172 * 273.55245 * 17 15 14 19 19 O 1.21690 * 120.00057 * 359.97438 * 18 17 15 20 20 C 1.46682 * 119.99744 * 180.02562 * 18 17 15 21 21 C 1.37871 * 126.22736 * 179.97438 * 20 18 17 22 22 C 1.39835 * 107.08355 * 179.97438 * 21 20 18 23 23 C 1.35454 * 107.86590 * 359.97438 * 22 21 20 24 24 N 1.35533 * 108.86952 * 0.02562 * 23 22 21 25 25 H 0.97004 * 125.67965 * 179.97438 * 24 23 22 26 26 H 1.09001 * 109.47442 * 296.76294 * 1 2 3 27 27 H 1.08995 * 109.47211 * 56.76261 * 1 2 3 28 28 H 1.09004 * 109.47006 * 176.76461 * 1 2 3 29 29 H 1.08999 * 109.46758 * 183.23532 * 3 2 1 30 30 H 1.08997 * 109.47086 * 303.23480 * 3 2 1 31 31 H 1.08998 * 109.47071 * 63.23625 * 3 2 1 32 32 H 1.08994 * 109.88365 * 144.41150 * 4 2 1 33 33 H 1.08998 * 109.88245 * 23.24557 * 4 2 1 34 34 H 0.96995 * 120.00508 * 180.02562 * 9 8 6 35 35 H 1.08999 * 110.36934 * 217.03073 * 14 5 4 36 36 H 1.09002 * 110.36525 * 94.71398 * 14 5 4 37 37 H 0.97006 * 119.99689 * 93.54557 * 17 15 14 38 38 H 1.07997 * 126.46086 * 359.97438 * 21 20 18 39 39 H 1.07998 * 126.06938 * 179.74000 * 22 21 20 40 40 H 1.07998 * 125.57010 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 2.3716 -2.1531 -0.7389 6 6 2.8945 -3.1633 -1.5013 7 1 3.1251 -2.9904 -2.5421 8 6 3.1282 -4.4095 -0.9364 9 7 2.8477 -4.6201 0.3322 10 14 3.8409 -5.7877 -1.9766 11 1 5.3235 -5.7503 -1.8993 12 1 3.3517 -7.0947 -1.4691 13 1 3.4143 -5.6138 -3.3883 14 6 2.0126 -2.2508 0.6876 15 6 2.0789 -0.7954 1.2138 16 1 1.4400 -0.6664 2.0875 17 7 3.4594 -0.4081 1.5145 18 6 3.9887 -0.6839 2.7229 19 8 3.3197 -1.2542 3.5644 20 6 5.3707 -0.2956 3.0241 21 6 6.0377 -0.5122 4.2112 22 6 7.3241 0.0153 4.0618 23 6 7.4186 0.5328 2.8136 24 7 6.2383 0.3505 2.1729 25 1 6.0381 0.6291 1.2656 26 1 -0.3634 0.4628 0.9176 27 1 -0.3633 0.5632 -0.8595 28 1 -0.3633 -1.0261 -0.0580 29 1 3.1609 1.4062 -0.0580 30 1 1.6751 1.9700 -0.8595 31 1 1.7690 1.9344 0.9176 32 1 2.9868 -0.3207 -1.5775 33 1 1.3263 -0.8255 -1.9977 34 1 3.0113 -5.4908 0.7271 35 1 2.7293 -2.8787 1.2170 36 1 1.0039 -2.6488 0.7985 37 1 3.9926 0.0467 0.8438 38 1 5.6413 -0.9976 5.0907 39 1 8.1027 0.0140 4.8102 40 1 8.2917 1.0132 2.3971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972801583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:13 Heat of formation + Delta-G solvation = 36.059144 kcal Electronic energy + Delta-G solvation = -22375.746307 eV Core-core repulsion = 19191.984358 eV Total energy + Delta-G solvation = -3183.761949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07169 -39.37662 -37.59706 -33.86630 -33.09638 -30.90194 -30.71647 -29.36475 -27.93660 -26.75818 -25.63429 -23.71126 -22.23362 -20.62869 -20.03442 -19.76852 -19.17158 -18.08048 -16.73133 -15.77989 -15.58643 -14.87740 -14.46454 -13.96075 -13.93746 -13.77908 -13.54234 -13.36900 -13.15459 -12.74007 -12.47803 -12.19151 -12.17860 -11.94233 -11.76006 -11.33633 -11.19852 -11.02282 -10.78485 -10.44737 -10.23660 -9.98166 -9.83092 -9.70736 -9.56868 -8.89936 -8.69091 -8.45186 -8.04405 -6.82152 -5.62935 -3.06749 1.73723 2.89327 3.22016 3.39090 3.43780 3.46834 3.58987 3.84735 4.47893 4.92786 5.09512 5.17356 5.20400 5.25118 5.45994 5.50976 5.57020 5.61687 5.75194 5.83219 5.97930 6.06728 6.13174 6.18984 6.21049 6.28338 6.38864 6.46007 6.57596 6.66410 6.70165 6.82346 6.94898 7.05258 7.44989 7.50262 7.61320 7.87557 8.01478 8.39610 8.67704 9.21532 9.83108 10.46995 11.39374 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013380 B = 0.006925 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.139174 B = 4042.446574 C = 5272.948444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.228 4.228 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.914 5.914 10 Si 0.912 3.088 11 H -0.290 1.290 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.145 3.855 15 C 0.126 3.874 16 H 0.087 0.913 17 N -0.703 5.703 18 C 0.586 3.414 19 O -0.530 6.530 20 C -0.040 4.040 21 C -0.116 4.116 22 C -0.213 4.213 23 C 0.012 3.988 24 N -0.539 5.539 25 H 0.415 0.585 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.024 0.976 34 H 0.253 0.747 35 H 0.114 0.886 36 H 0.021 0.979 37 H 0.388 0.612 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 14.037 2.352 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.357 4.357 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.562 5.562 10 Si 0.743 3.257 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.020 3.980 15 C 0.020 3.980 16 H 0.105 0.895 17 N -0.352 5.352 18 C 0.373 3.627 19 O -0.407 6.407 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.238 4.238 23 C -0.124 4.124 24 N -0.135 5.135 25 H 0.252 0.748 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.132 0.868 36 H 0.039 0.961 37 H 0.222 0.778 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.917 13.406 2.814 14.248 hybrid contribution 0.652 -0.453 -1.437 1.642 sum 4.569 12.954 1.377 13.805 Atomic orbital electron populations 1.21681 0.93382 1.02587 1.00919 1.21847 0.96175 0.94433 0.96422 1.21714 0.99996 0.95620 1.01451 1.21397 0.96321 0.86898 0.93640 1.44452 1.74221 1.06622 1.07363 1.18999 1.34502 0.89295 0.92853 0.90640 1.24805 1.01635 0.97639 0.96346 1.69798 1.53258 1.22395 1.10751 0.86121 0.78688 0.81843 0.79086 1.21719 1.21608 1.20795 1.22326 1.00223 0.90458 0.85024 1.22533 0.80897 0.98298 0.96243 0.89505 1.45698 1.15180 1.60227 1.14107 1.16978 0.84335 0.78998 0.82418 1.90824 1.60576 1.41768 1.47499 1.20679 0.92470 1.09081 0.93138 1.21288 0.93798 1.02324 0.96852 1.20846 0.98221 1.07406 0.97312 1.21946 0.89743 1.06220 0.94485 1.42051 1.11407 1.45708 1.14300 0.74828 0.92996 0.92683 0.91658 0.93371 0.92595 0.92694 0.96354 0.95815 0.93605 0.86798 0.96072 0.77772 0.83660 0.84227 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.41 37.16 0.31 -1.60 16 2 C -0.09 -1.43 0.81 -152.68 -0.12 -1.55 16 3 C -0.13 -1.65 8.07 37.16 0.30 -1.35 16 4 C 0.14 2.83 6.41 -3.07 -0.02 2.81 16 5 N -0.60 -14.91 3.39 -170.08 -0.58 -15.49 16 6 C -0.23 -6.28 10.27 -15.06 -0.15 -6.44 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.91 -27.29 10.09 55.49 0.56 -26.73 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.15 3.58 5.27 -2.53 -0.01 3.57 16 15 C 0.13 2.42 2.56 -65.78 -0.17 2.25 16 16 H 0.09 1.71 7.63 -51.93 -0.40 1.31 16 17 N -0.70 -12.44 4.69 -53.03 -0.25 -12.68 16 18 C 0.59 11.30 7.79 -12.85 -0.10 11.20 16 19 O -0.53 -12.15 16.63 5.20 0.09 -12.06 16 20 C -0.04 -0.65 7.06 -81.98 -0.58 -1.23 16 21 C -0.12 -1.79 10.65 -39.12 -0.42 -2.21 16 22 C -0.21 -2.64 10.81 -39.98 -0.43 -3.07 16 23 C 0.01 0.13 11.89 -16.91 -0.20 -0.07 16 24 N -0.54 -6.66 5.99 -9.39 -0.06 -6.72 16 25 H 0.41 4.10 8.19 -40.82 -0.33 3.76 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.11 7.57 -51.93 -0.39 0.72 16 29 H 0.05 0.57 6.35 -51.93 -0.33 0.24 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.35 7.76 -51.93 -0.40 -0.05 16 33 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.11 3.30 5.87 -51.93 -0.30 3.00 16 36 H 0.02 0.56 7.80 -51.93 -0.41 0.16 16 37 H 0.39 5.95 6.01 -40.82 -0.25 5.70 16 38 H 0.15 2.22 8.06 -52.49 -0.42 1.79 16 39 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -33.42 325.06 -7.78 -41.19 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.72 Total: 8.33 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.69 Total: 1.98 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.32 Total: -61.62 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.42 -7.78 -41.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972801583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.252 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds