Wall clock time and date at job start Mon Mar 30 2020 02:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.36936 * 125.64899 * 178.89496 * 5 4 2 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47048 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46969 * 120.00174 * 10 8 6 13 13 H 1.48497 * 109.47276 * 240.00208 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00165 * 204.88167 * 15 14 5 17 17 N 1.46495 * 111.00127 * 81.07022 * 15 14 5 18 18 C 1.34779 * 120.00474 * 86.45568 * 17 15 14 19 19 O 1.21692 * 119.99523 * 359.97438 * 18 17 15 20 20 C 1.46673 * 120.00147 * 179.97438 * 18 17 15 21 21 C 1.37875 * 126.23520 * 179.68824 * 20 18 17 22 22 C 1.39828 * 107.08869 * 179.84810 * 21 20 18 23 23 C 1.35456 * 107.86572 * 0.41412 * 22 21 20 24 24 N 1.35541 * 108.86871 * 359.74600 * 23 22 21 25 25 H 0.96992 * 125.67570 * 180.02562 * 24 23 22 26 26 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 27 27 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 28 28 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 29 29 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 30 30 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 31 31 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 32 32 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 33 33 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 34 34 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 36 36 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 37 37 H 0.97004 * 120.00040 * 266.44542 * 17 15 14 38 38 H 1.08002 * 126.44867 * 359.96327 * 21 20 18 39 39 H 1.07998 * 126.07247 * 180.13769 * 22 21 20 40 40 H 1.08002 * 125.56637 * 179.77374 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8980 -3.1616 1.5062 7 1 3.1271 -2.9866 2.5470 8 6 3.1334 -4.4087 0.9438 9 7 2.8538 -4.6221 -0.3245 10 14 3.8471 -5.7841 1.9871 11 1 4.0703 -5.2914 3.3701 12 1 2.8987 -6.9265 2.0161 13 1 5.1390 -6.2279 1.4047 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 1.4401 -0.6739 -2.0878 17 7 3.4589 -0.4107 -1.5152 18 6 3.9889 -0.6875 -2.7231 19 8 3.3213 -1.2614 -3.5633 20 6 5.3701 -0.2972 -3.0249 21 6 6.0398 -0.5203 -4.2093 22 6 7.3229 0.0158 -4.0631 23 6 7.4159 0.5372 -2.8163 24 7 6.2359 0.3534 -2.1752 25 1 6.0349 0.6339 -1.2688 26 1 -0.3633 0.4858 0.9056 27 1 -0.3633 0.5413 -0.8735 28 1 -0.3633 -1.0272 -0.0320 29 1 3.1621 1.4056 -0.0320 30 1 1.6957 1.9622 -0.8735 31 1 1.7476 1.9425 0.9056 32 1 1.3264 -0.8256 1.9977 33 1 2.9854 -0.3193 1.5792 34 1 3.0186 -5.4934 -0.7176 35 1 2.7337 -2.8821 -1.2130 36 1 1.0085 -2.6566 -0.7952 37 1 3.9912 0.0466 -0.8454 38 1 5.6466 -1.0143 -5.0855 39 1 8.1031 0.0108 -4.8098 40 1 8.2877 1.0208 -2.4011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972801591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:16 Heat of formation + Delta-G solvation = 36.530625 kcal Electronic energy + Delta-G solvation = -22373.907696 eV Core-core repulsion = 19190.166192 eV Total energy + Delta-G solvation = -3183.741504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07216 -39.36924 -37.59134 -33.87061 -33.09647 -30.90382 -30.71891 -29.36545 -27.94067 -26.75506 -25.63525 -23.71400 -22.23632 -20.62983 -20.03324 -19.76841 -19.17430 -18.08507 -16.73431 -15.77942 -15.59356 -14.88083 -14.46461 -13.95778 -13.93157 -13.77188 -13.54694 -13.37765 -13.16637 -12.71471 -12.47414 -12.19400 -12.18277 -11.95475 -11.77227 -11.34298 -11.19834 -11.02216 -10.80333 -10.43594 -10.20864 -9.97967 -9.82838 -9.71169 -9.57070 -8.90040 -8.69592 -8.45257 -8.04471 -6.82238 -5.63324 -3.06969 1.73559 2.89242 3.21877 3.39006 3.43666 3.47174 3.58802 3.84660 4.47669 4.92667 5.09400 5.17204 5.20658 5.24385 5.45932 5.50813 5.56543 5.61421 5.74952 5.82425 5.98142 6.06798 6.12877 6.18932 6.20726 6.28465 6.38917 6.45758 6.57457 6.66020 6.70376 6.82212 6.94642 7.05148 7.44910 7.50221 7.61683 7.87356 8.01247 8.39357 8.67572 9.21335 9.82909 10.46788 11.39089 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.006922 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.511137 B = 4043.912050 C = 5274.294498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.227 4.227 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.914 5.914 10 Si 0.912 3.088 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.291 1.291 14 C 0.145 3.855 15 C 0.126 3.874 16 H 0.087 0.913 17 N -0.703 5.703 18 C 0.586 3.414 19 O -0.530 6.530 20 C -0.040 4.040 21 C -0.116 4.116 22 C -0.213 4.213 23 C 0.012 3.988 24 N -0.539 5.539 25 H 0.415 0.585 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.252 0.748 35 H 0.114 0.886 36 H 0.022 0.978 37 H 0.388 0.612 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 14.073 -2.364 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.356 4.356 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.562 5.562 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.218 1.218 14 C 0.020 3.980 15 C 0.021 3.979 16 H 0.105 0.895 17 N -0.352 5.352 18 C 0.373 3.627 19 O -0.407 6.407 20 C -0.154 4.154 21 C -0.142 4.142 22 C -0.238 4.238 23 C -0.124 4.124 24 N -0.135 5.135 25 H 0.252 0.748 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.039 0.961 37 H 0.223 0.777 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.929 13.447 -2.819 14.290 hybrid contribution 0.636 -0.460 1.431 1.632 sum 4.565 12.988 -1.388 13.836 Atomic orbital electron populations 1.21682 0.93397 1.02564 1.00933 1.21887 0.96162 0.94411 0.96419 1.21708 1.00000 0.95601 1.01455 1.21389 0.96335 0.86906 0.93632 1.44458 1.74154 1.06667 1.07380 1.19048 1.34373 0.89322 0.92833 0.90582 1.24809 1.01661 0.97641 0.96350 1.69811 1.53353 1.22214 1.10803 0.86051 0.78443 0.82262 0.79010 1.20631 1.21707 1.21805 1.22324 1.00258 0.90444 0.85014 1.22573 0.80899 0.98210 0.96261 0.89501 1.45715 1.15268 1.60086 1.14178 1.16979 0.84326 0.79021 0.82411 1.90824 1.60619 1.41645 1.47571 1.20679 0.92505 1.08940 0.93252 1.21289 0.93815 1.02231 0.96911 1.20845 0.98286 1.07279 0.97375 1.21949 0.89768 1.06219 0.94455 1.42051 1.11470 1.45594 1.14358 0.74833 0.92648 0.93030 0.91675 0.93381 0.92688 0.92580 0.95845 0.96365 0.93659 0.86804 0.96057 0.77744 0.83659 0.84225 0.81558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.44 37.16 0.31 -1.59 16 2 C -0.09 -1.43 0.81 -152.54 -0.12 -1.55 16 3 C -0.13 -1.65 8.17 37.15 0.30 -1.35 16 4 C 0.14 2.83 6.40 -3.07 -0.02 2.81 16 5 N -0.60 -14.91 3.39 -170.07 -0.58 -15.48 16 6 C -0.23 -6.26 10.27 -15.06 -0.15 -6.42 16 7 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 9 N -0.91 -27.28 10.09 55.49 0.56 -26.72 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.15 3.58 5.27 -2.53 -0.01 3.56 16 15 C 0.13 2.43 2.57 -65.65 -0.17 2.26 16 16 H 0.09 1.71 7.63 -51.93 -0.40 1.31 16 17 N -0.70 -12.44 4.67 -52.90 -0.25 -12.68 16 18 C 0.59 11.30 7.79 -12.85 -0.10 11.20 16 19 O -0.53 -12.15 16.63 5.20 0.09 -12.06 16 20 C -0.04 -0.66 7.06 -81.98 -0.58 -1.23 16 21 C -0.12 -1.79 10.65 -39.12 -0.42 -2.21 16 22 C -0.21 -2.64 10.81 -39.98 -0.43 -3.07 16 23 C 0.01 0.13 11.89 -16.91 -0.20 -0.07 16 24 N -0.54 -6.65 5.99 -9.39 -0.06 -6.71 16 25 H 0.41 4.09 8.19 -40.82 -0.33 3.76 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.10 7.46 -51.93 -0.39 0.72 16 29 H 0.05 0.57 6.21 -51.93 -0.32 0.25 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 33 H 0.02 0.35 7.82 -51.93 -0.41 -0.06 16 34 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.11 3.30 5.87 -51.93 -0.31 3.00 16 36 H 0.02 0.57 7.73 -51.93 -0.40 0.17 16 37 H 0.39 5.95 5.94 -40.82 -0.24 5.70 16 38 H 0.15 2.22 8.06 -52.49 -0.42 1.79 16 39 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 324.85 15.07 4.90 4.90 Total: -1.00 -33.44 324.85 -7.76 -41.20 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.71 Total: 8.29 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.69 Total: 2.00 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.32 Total: -61.60 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.44 -7.76 -41.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972801591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.732 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds