Wall clock time and date at job start Mon Mar 30 2020 02:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.36936 * 125.64899 * 178.89496 * 5 4 2 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.38819 * 120.00094 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99956 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47048 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46969 * 120.00174 * 10 8 6 13 13 H 1.48497 * 109.47276 * 240.00208 * 10 8 6 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00165 * 204.88167 * 15 14 5 17 17 N 1.46495 * 111.00127 * 81.07022 * 15 14 5 18 18 C 1.34779 * 120.00474 * 86.45568 * 17 15 14 19 19 O 1.21692 * 119.99523 * 359.97438 * 18 17 15 20 20 C 1.46673 * 120.00147 * 179.97438 * 18 17 15 21 21 C 1.37875 * 126.23520 * 179.68824 * 20 18 17 22 22 C 1.39828 * 107.08869 * 179.84810 * 21 20 18 23 23 C 1.35456 * 107.86572 * 0.41412 * 22 21 20 24 24 N 1.35541 * 108.86871 * 359.74600 * 23 22 21 25 25 H 0.96992 * 125.67570 * 180.02562 * 24 23 22 26 26 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 27 27 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 28 28 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 29 29 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 30 30 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 31 31 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 32 32 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 33 33 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 34 34 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 35 35 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 36 36 H 1.09001 * 110.36709 * 265.18192 * 14 5 4 37 37 H 0.97004 * 120.00040 * 266.44542 * 17 15 14 38 38 H 1.08002 * 126.44867 * 359.96327 * 21 20 18 39 39 H 1.07998 * 126.07247 * 180.13769 * 22 21 20 40 40 H 1.08002 * 125.56637 * 179.77374 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8980 -3.1616 1.5062 7 1 3.1271 -2.9866 2.5470 8 6 3.1334 -4.4087 0.9438 9 7 2.8538 -4.6221 -0.3245 10 14 3.8471 -5.7841 1.9871 11 1 4.0703 -5.2914 3.3701 12 1 2.8987 -6.9265 2.0161 13 1 5.1390 -6.2279 1.4047 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 1.4401 -0.6739 -2.0878 17 7 3.4589 -0.4107 -1.5152 18 6 3.9889 -0.6875 -2.7231 19 8 3.3213 -1.2614 -3.5633 20 6 5.3701 -0.2972 -3.0249 21 6 6.0398 -0.5203 -4.2093 22 6 7.3229 0.0158 -4.0631 23 6 7.4159 0.5372 -2.8163 24 7 6.2359 0.3534 -2.1752 25 1 6.0349 0.6339 -1.2688 26 1 -0.3633 0.4858 0.9056 27 1 -0.3633 0.5413 -0.8735 28 1 -0.3633 -1.0272 -0.0320 29 1 3.1621 1.4056 -0.0320 30 1 1.6957 1.9622 -0.8735 31 1 1.7476 1.9425 0.9056 32 1 1.3264 -0.8256 1.9977 33 1 2.9854 -0.3193 1.5792 34 1 3.0186 -5.4934 -0.7176 35 1 2.7337 -2.8821 -1.2130 36 1 1.0085 -2.6566 -0.7952 37 1 3.9912 0.0466 -0.8454 38 1 5.6466 -1.0143 -5.0855 39 1 8.1031 0.0108 -4.8098 40 1 8.2877 1.0208 -2.4011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972801591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:15 Heat of formation + Delta-G solvation = 12.985847 kcal Electronic energy + Delta-G solvation = -22374.928674 eV Core-core repulsion = 19190.166192 eV Total energy + Delta-G solvation = -3184.762482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.19376 -40.85178 -39.14888 -35.72425 -34.61399 -32.63326 -31.95497 -30.68457 -29.41873 -28.00739 -27.41710 -25.34611 -23.68021 -22.12273 -21.29783 -21.06421 -20.53717 -19.42090 -18.72553 -17.39513 -16.94544 -16.52979 -16.06354 -15.63497 -15.40855 -15.10602 -14.76031 -14.63635 -14.56299 -14.08079 -13.74058 -13.70851 -13.52152 -13.18834 -13.07789 -13.03934 -12.89258 -12.66523 -12.60267 -12.08211 -11.81656 -11.79784 -11.47767 -11.39489 -11.14207 -10.79315 -10.08005 -9.92978 -9.15043 -8.86374 -7.77196 -5.22841 0.52306 1.42272 1.43457 1.53770 1.88364 2.11407 2.29880 2.46154 2.46682 3.32215 3.52497 3.66356 3.93133 3.95933 4.03985 4.34267 4.37768 4.44809 4.48680 4.54080 4.72492 4.80460 4.85202 4.89599 5.00378 5.06544 5.13727 5.17433 5.26164 5.29966 5.31266 5.46188 5.50306 5.63477 5.78954 5.82006 5.95585 6.29643 6.51394 6.65268 7.07009 7.22381 7.77315 8.41034 9.23171 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013378 B = 0.006922 C = 0.005307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.511137 B = 4043.912050 C = 5274.294498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.617 5.617 6 C -0.231 4.231 7 H 0.086 0.914 8 C -0.071 4.071 9 N -0.948 5.948 10 Si 0.977 3.023 11 H -0.261 1.261 12 H -0.296 1.296 13 H -0.296 1.296 14 C 0.153 3.847 15 C 0.136 3.864 16 H 0.079 0.921 17 N -0.691 5.691 18 C 0.580 3.420 19 O -0.582 6.582 20 C -0.081 4.081 21 C -0.131 4.131 22 C -0.227 4.227 23 C 0.045 3.955 24 N -0.528 5.528 25 H 0.427 0.573 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.242 0.758 35 H 0.067 0.933 36 H -0.014 1.014 37 H 0.402 0.598 38 H 0.131 0.869 39 H 0.166 0.834 40 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 17.138 -0.549 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.182 4.182 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.360 4.360 7 H 0.104 0.896 8 C -0.263 4.263 9 N -0.598 5.598 10 Si 0.806 3.194 11 H -0.185 1.185 12 H -0.223 1.223 13 H -0.224 1.224 14 C 0.027 3.973 15 C 0.030 3.970 16 H 0.097 0.903 17 N -0.341 5.341 18 C 0.369 3.631 19 O -0.463 6.463 20 C -0.194 4.194 21 C -0.158 4.158 22 C -0.250 4.250 23 C -0.092 4.092 24 N -0.125 5.125 25 H 0.267 0.733 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.004 0.996 37 H 0.239 0.761 38 H 0.149 0.851 39 H 0.183 0.817 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 5.912 16.578 -0.934 17.625 hybrid contribution 0.073 -1.378 0.866 1.629 sum 5.985 15.200 -0.068 16.336 Atomic orbital electron populations 1.21696 0.92325 1.01232 1.03188 1.21878 0.96994 0.95950 0.92557 1.21693 1.00537 0.92556 1.03371 1.21651 0.97214 0.84755 0.95082 1.44677 1.73882 1.08361 1.07359 1.19473 1.33067 0.90060 0.93437 0.89617 1.25665 1.02992 1.00257 0.97431 1.70136 1.55169 1.21887 1.12618 0.85020 0.76967 0.79057 0.78361 1.18472 1.22334 1.22366 1.21941 0.96755 0.93257 0.85353 1.22245 0.82083 0.95528 0.97128 0.90306 1.45541 1.14749 1.59642 1.14210 1.17495 0.85440 0.78038 0.82094 1.90781 1.62300 1.44087 1.49115 1.20224 0.91841 1.12459 0.94847 1.21505 0.95559 1.02277 0.96453 1.21199 0.97422 1.07368 0.99024 1.22788 0.89850 1.03138 0.93411 1.42038 1.11244 1.44617 1.14597 0.73348 0.90140 0.91020 0.94833 0.92452 0.91399 0.90094 0.95510 0.94583 0.94843 0.91487 0.99647 0.76111 0.85055 0.81666 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 8.44 71.98 0.61 -2.98 16 2 C -0.07 -2.25 0.81 -50.91 -0.04 -2.29 16 3 C -0.12 -2.66 8.17 71.98 0.59 -2.08 16 4 C 0.14 5.23 6.40 86.73 0.56 5.78 16 5 N -0.62 -31.16 3.39 -691.98 -2.35 -33.51 16 6 C -0.23 -12.87 10.27 84.04 0.86 -12.00 16 7 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 8 C -0.07 -4.13 5.49 84.86 0.47 -3.66 16 9 N -0.95 -59.74 10.09 21.65 0.22 -59.52 16 10 Si 0.98 46.81 29.55 68.60 2.03 48.83 16 11 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 12 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 13 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 14 C 0.15 8.00 5.27 86.86 0.46 8.45 16 15 C 0.14 5.38 2.57 46.47 0.12 5.50 16 16 H 0.08 3.25 7.63 -2.39 -0.02 3.23 16 17 N -0.69 -24.61 4.67 -439.51 -2.05 -26.66 16 18 C 0.58 23.21 7.79 86.45 0.67 23.88 16 19 O -0.58 -28.58 16.63 -4.32 -0.07 -28.65 16 20 C -0.08 -2.62 7.06 40.35 0.28 -2.33 16 21 C -0.13 -4.05 10.65 22.57 0.24 -3.81 16 22 C -0.23 -5.02 10.81 22.01 0.24 -4.79 16 23 C 0.04 0.79 11.89 83.48 0.99 1.78 16 24 N -0.53 -11.66 5.99 -183.61 -1.10 -12.77 16 25 H 0.43 7.05 8.19 -92.71 -0.76 6.29 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.03 1.14 7.46 -2.38 -0.02 1.13 16 29 H 0.06 1.13 6.21 -2.39 -0.01 1.12 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 1.02 7.84 -2.39 -0.02 1.00 16 33 H 0.04 1.26 7.82 -2.39 -0.02 1.25 16 34 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 35 H 0.07 4.17 5.87 -2.39 -0.01 4.16 16 36 H -0.01 -0.82 7.73 -2.39 -0.02 -0.84 16 37 H 0.40 11.74 5.94 -92.71 -0.55 11.19 16 38 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 39 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -79.20 324.85 2.46 -76.74 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.25 Total: 24.06 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.04 Total: 11.46 kcal Atomic # 7 Polarization: -127.17 SS G_CDS: -5.28 Total: -132.45 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.07 Total: -28.65 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -79.20 2.46 -76.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972801591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.725 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds