Wall clock time and date at job start Mon Mar 30 2020 02:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 110.64046 * 2 1 4 4 C 1.54316 * 110.72327 * 123.14440 * 2 1 3 5 5 N 1.47026 * 107.27365 * 140.55544 * 4 2 1 6 6 C 1.36933 * 125.65326 * 180.79632 * 5 4 2 7 7 H 1.08005 * 119.99541 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00564 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99514 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00305 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47209 * 89.99775 * 10 8 6 12 12 H 1.48501 * 109.47422 * 209.99954 * 10 8 6 13 13 H 1.48504 * 109.47192 * 329.99911 * 10 8 6 14 14 C 1.47425 * 108.70074 * 1.05989 * 5 4 2 15 15 C 1.54910 * 104.83231 * 335.87083 * 14 5 4 16 16 H 1.09002 * 111.00267 * 155.08153 * 15 14 5 17 17 N 1.46496 * 111.03806 * 278.91717 * 15 14 5 18 18 C 1.34770 * 120.00229 * 267.21591 * 17 15 14 19 19 O 1.21629 * 120.00016 * 359.97438 * 18 17 15 20 20 C 1.47267 * 119.99985 * 179.97438 * 18 17 15 21 21 C 1.46687 * 126.94071 * 359.68695 * 20 18 17 22 22 C 1.34490 * 106.33020 * 179.88994 * 21 20 18 23 23 N 1.36449 * 108.85476 * 0.36955 * 22 21 20 24 24 H 0.96999 * 124.84808 * 179.76854 * 23 22 21 25 25 C 1.34656 * 110.30250 * 359.75794 * 23 22 21 26 26 H 1.09003 * 109.47103 * 298.30580 * 1 2 3 27 27 H 1.09000 * 109.47385 * 58.30874 * 1 2 3 28 28 H 1.09004 * 109.47258 * 178.30986 * 1 2 3 29 29 H 1.08998 * 109.46762 * 181.68782 * 3 2 1 30 30 H 1.08993 * 109.47001 * 301.69203 * 3 2 1 31 31 H 1.09008 * 109.46751 * 61.69343 * 3 2 1 32 32 H 1.09004 * 109.88447 * 21.14413 * 4 2 1 33 33 H 1.08996 * 110.01243 * 260.04843 * 4 2 1 34 34 H 0.97002 * 119.99999 * 179.97438 * 9 8 6 35 35 H 1.09001 * 110.36478 * 94.71036 * 14 5 4 36 36 H 1.08998 * 110.36859 * 217.03414 * 14 5 4 37 37 H 0.97001 * 119.99335 * 87.21561 * 17 15 14 38 38 H 1.07996 * 126.83241 * 0.02562 * 21 20 18 39 39 H 1.07994 * 125.57043 * 180.09368 * 22 21 20 40 40 H 1.07999 * 125.80592 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2445 -1.5495 0.7415 6 6 4.0070 -2.3910 1.5066 7 1 3.7666 -2.5396 2.5491 8 6 5.0895 -3.0524 0.9429 9 7 5.3827 -2.8709 -0.3273 10 14 6.1300 -4.1998 1.9869 11 1 5.5719 -5.5742 1.9183 12 1 7.5245 -4.2057 1.4764 13 1 6.1208 -3.7317 3.3962 14 6 3.4632 -1.2509 -0.6856 15 6 2.0789 -0.7974 -1.2125 16 1 2.1849 -0.1552 -2.0869 17 7 1.2266 -1.9508 -1.5119 18 6 1.2021 -2.4654 -2.7572 19 8 1.8873 -1.9721 -3.6327 20 6 0.3458 -3.6252 -3.0579 21 6 -0.5311 -4.3394 -2.1238 22 6 -1.1179 -5.3211 -2.8313 23 7 -0.6647 -5.2691 -4.1173 24 1 -0.9356 -5.8744 -4.8253 25 6 0.2119 -4.2575 -4.2633 26 1 -0.3633 0.4873 0.9048 27 1 -0.3634 0.5399 -0.8744 28 1 -0.3634 -1.0272 -0.0303 29 1 3.1586 1.4097 -0.0303 30 1 1.6922 1.9621 -0.8744 31 1 1.7413 1.9436 0.9049 32 1 1.3130 -1.4733 1.5799 33 1 2.3735 -0.1010 1.9997 34 1 6.1393 -3.3327 -0.7212 35 1 4.1931 -0.4491 -0.7978 36 1 3.7959 -2.1445 -1.2135 37 1 0.6799 -2.3439 -0.8137 38 1 -0.6780 -4.1192 -1.0767 39 1 -1.8279 -6.0366 -2.4438 40 1 0.7221 -3.9904 -5.1770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974620151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:18 Heat of formation + Delta-G solvation = 36.259354 kcal Electronic energy + Delta-G solvation = -22274.616828 eV Core-core repulsion = 19090.863561 eV Total energy + Delta-G solvation = -3183.753267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92644 -39.24375 -37.43335 -33.69442 -32.83591 -30.85121 -30.58710 -29.02044 -27.93118 -26.67481 -25.52000 -23.67343 -22.15327 -20.60283 -20.01772 -19.19870 -18.74208 -18.16065 -16.62928 -15.75550 -15.52597 -14.62202 -14.35818 -13.85212 -13.77895 -13.66716 -13.61101 -13.34390 -13.05781 -12.90635 -12.50810 -12.05957 -11.92020 -11.79674 -11.64071 -11.19581 -11.06617 -10.90389 -10.70329 -10.28762 -10.11421 -9.84415 -9.69285 -9.59415 -9.27037 -8.72851 -8.59292 -8.30727 -8.04870 -6.71466 -5.54339 -2.97269 2.08068 2.56495 3.25013 3.44731 3.49230 3.51856 4.00109 4.15256 4.55739 5.02173 5.12073 5.22339 5.35917 5.40195 5.45225 5.60780 5.61403 5.73608 5.93182 5.96830 5.98495 6.13434 6.16964 6.23105 6.31509 6.39537 6.54459 6.57887 6.72955 6.79912 6.83500 6.92094 7.00051 7.18280 7.49269 7.63085 7.71262 7.99725 8.32385 8.49528 9.01530 9.30683 9.92471 10.57251 11.47995 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.006688 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.515786 B = 4185.614014 C = 5394.481928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.223 4.223 7 H 0.076 0.924 8 C -0.010 4.010 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.146 3.854 15 C 0.125 3.875 16 H 0.087 0.913 17 N -0.695 5.695 18 C 0.588 3.412 19 O -0.560 6.560 20 C -0.221 4.221 21 C -0.166 4.166 22 C -0.024 4.024 23 N -0.558 5.558 24 H 0.415 0.585 25 C 0.066 3.934 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.020 0.980 33 H 0.022 0.978 34 H 0.251 0.749 35 H 0.019 0.981 36 H 0.113 0.887 37 H 0.396 0.604 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 -0.923 -4.937 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.185 4.185 4 C 0.018 3.982 5 N -0.326 5.326 6 C -0.352 4.352 7 H 0.093 0.907 8 C -0.206 4.206 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.020 3.980 15 C 0.020 3.980 16 H 0.105 0.895 17 N -0.344 5.344 18 C 0.376 3.624 19 O -0.441 6.441 20 C -0.231 4.231 21 C -0.191 4.191 22 C -0.152 4.152 23 N -0.153 5.153 24 H 0.250 0.750 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.130 0.870 37 H 0.231 0.769 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.326 -0.783 -5.618 15.408 hybrid contribution 0.261 -1.139 0.733 1.379 sum -14.065 -1.922 -4.885 15.013 Atomic orbital electron populations 1.21706 0.94678 1.01304 1.01044 1.21841 0.94836 0.95664 0.96602 1.21681 1.01863 0.94212 1.00775 1.21395 0.90265 0.92947 0.93639 1.44457 1.30506 1.50361 1.07320 1.19015 1.06284 1.17206 0.92656 0.90655 1.24785 0.98824 1.00642 0.96309 1.69820 1.29914 1.45979 1.10695 0.86126 0.79730 0.80811 0.79115 1.21764 1.21754 1.20837 1.22316 0.89384 1.01303 0.84992 1.22456 0.93132 0.86301 0.96139 0.89529 1.45541 1.45612 1.32749 1.10503 1.17276 0.80749 0.81974 0.82400 1.90734 1.44254 1.62229 1.46858 1.20538 1.06097 1.01954 0.94493 1.22092 1.00156 0.97759 0.99081 1.21705 1.05438 1.03816 0.84230 1.41585 1.35783 1.26978 1.10926 0.74957 1.21799 0.95158 0.90310 0.99718 0.92931 0.92916 0.92843 0.91826 0.93143 0.92793 0.96179 0.95992 0.93785 0.96339 0.86977 0.76930 0.83888 0.81687 0.80751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.15 37.16 0.30 -1.52 16 2 C -0.09 -1.54 0.80 -152.68 -0.12 -1.66 16 3 C -0.13 -2.02 8.44 37.16 0.31 -1.71 16 4 C 0.14 2.97 6.41 -3.07 -0.02 2.95 16 5 N -0.60 -15.38 3.39 -170.07 -0.58 -15.96 16 6 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 7 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 8 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.72 10.09 55.49 0.56 -27.16 16 10 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.15 3.70 5.27 -2.53 -0.01 3.69 16 15 C 0.13 2.56 2.67 -65.78 -0.18 2.39 16 16 H 0.09 1.82 7.44 -51.93 -0.39 1.43 16 17 N -0.70 -13.31 4.51 -52.85 -0.24 -13.54 16 18 C 0.59 11.77 7.81 -12.59 -0.10 11.67 16 19 O -0.56 -13.00 16.55 5.25 0.09 -12.92 16 20 C -0.22 -3.63 6.29 -103.35 -0.65 -4.28 16 21 C -0.17 -2.26 10.56 -37.50 -0.40 -2.66 16 22 C -0.02 -0.26 11.89 -16.82 -0.20 -0.46 16 23 N -0.56 -5.50 5.90 -12.85 -0.08 -5.58 16 24 H 0.41 2.45 8.96 -40.82 -0.37 2.08 16 25 C 0.07 0.88 11.69 -16.84 -0.20 0.69 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.73 6.34 -51.93 -0.33 0.40 16 29 H 0.06 1.13 7.47 -51.93 -0.39 0.74 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.02 0.41 7.82 -51.93 -0.41 0.00 16 33 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 34 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 36 H 0.11 3.33 5.87 -51.93 -0.30 3.02 16 37 H 0.40 6.95 6.25 -40.82 -0.26 6.69 16 38 H 0.14 1.78 7.69 -52.49 -0.40 1.37 16 39 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -34.67 325.31 -7.60 -42.27 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.73 Total: 8.12 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -1.51 Total: 2.29 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.33 Total: -62.24 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.67 -7.60 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974620151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.529 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds