Wall clock time and date at job start Mon Mar 30 2020 02:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 110.78141 * 2 1 4 4 C 1.54322 * 110.72391 * 236.76120 * 2 1 3 5 5 N 1.47022 * 107.27324 * 219.44617 * 4 2 1 6 6 C 1.36934 * 125.64961 * 178.98878 * 5 4 2 7 7 H 1.08009 * 119.99682 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00235 * 179.97438 * 6 5 4 9 9 N 1.31612 * 119.99553 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00028 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47222 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47481 * 119.99752 * 10 8 6 13 13 H 1.48499 * 109.46959 * 239.99649 * 10 8 6 14 14 C 1.47424 * 108.70057 * 358.93585 * 5 4 2 15 15 C 1.54904 * 104.83355 * 24.13387 * 14 5 4 16 16 H 1.08998 * 111.03633 * 204.90187 * 15 14 5 17 17 N 1.46496 * 111.00603 * 81.06089 * 15 14 5 18 18 C 1.34785 * 119.99750 * 92.80637 * 17 15 14 19 19 O 1.21622 * 119.99947 * 359.97438 * 18 17 15 20 20 C 1.47262 * 119.99606 * 180.02562 * 18 17 15 21 21 C 1.46683 * 126.94309 * 359.95564 * 20 18 17 22 22 C 1.34485 * 106.33089 * 180.02562 * 21 20 18 23 23 N 1.36447 * 108.85967 * 0.02562 * 22 21 20 24 24 H 0.96996 * 124.85782 * 180.02562 * 23 22 21 25 25 C 1.34665 * 110.29669 * 359.97438 * 23 22 21 26 26 H 1.09005 * 109.47717 * 296.76060 * 1 2 3 27 27 H 1.08997 * 109.47657 * 56.76330 * 1 2 3 28 28 H 1.09001 * 109.47564 * 176.76222 * 1 2 3 29 29 H 1.08996 * 109.47706 * 183.23427 * 3 2 1 30 30 H 1.09006 * 109.47174 * 303.24189 * 3 2 1 31 31 H 1.09003 * 109.46878 * 63.23418 * 3 2 1 32 32 H 1.09003 * 109.87696 * 338.85973 * 4 2 1 33 33 H 1.08998 * 109.88343 * 100.02059 * 4 2 1 34 34 H 0.97005 * 119.99889 * 180.02562 * 9 8 6 35 35 H 1.08998 * 110.36847 * 265.28674 * 14 5 4 36 36 H 1.09002 * 110.36657 * 142.97395 * 14 5 4 37 37 H 0.96999 * 120.00404 * 272.79948 * 17 15 14 38 38 H 1.07994 * 126.83829 * 0.07224 * 21 20 18 39 39 H 1.08000 * 125.57683 * 180.02562 * 22 21 20 40 40 H 1.07999 * 125.80306 * 179.74142 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2445 -1.5507 -0.7389 6 6 4.0044 -2.3967 -1.5017 7 1 3.7613 -2.5504 -2.5428 8 6 5.0872 -3.0568 -0.9370 9 7 5.3836 -2.8690 0.3315 10 14 6.1234 -4.2113 -1.9774 11 1 5.5850 -4.2487 -3.3609 12 1 7.5271 -3.7276 -2.0050 13 1 6.0815 -5.5760 -1.3934 14 6 3.4632 -1.2497 0.6876 15 6 2.0789 -0.7955 1.2138 16 1 2.1842 -0.1520 2.0872 17 7 1.2271 -1.9488 1.5144 18 6 1.2025 -2.4617 2.7606 19 8 1.8878 -1.9674 3.6353 20 6 0.3466 -3.6214 3.0626 21 6 -0.5350 -4.3329 2.1309 22 6 -1.1179 -5.3169 2.8385 23 7 -0.6647 -5.2634 4.1244 24 1 -0.9352 -5.8680 4.8331 25 6 0.2126 -4.2520 4.2689 26 1 -0.3635 0.4627 0.9176 27 1 -0.3634 0.5632 -0.8595 28 1 -0.3634 -1.0260 -0.0580 29 1 3.1609 1.4062 -0.0580 30 1 1.6750 1.9701 -0.8595 31 1 1.7689 1.9344 0.9176 32 1 1.3129 -1.4758 -1.5775 33 1 2.3740 -0.1024 -1.9977 34 1 6.1405 -3.3299 0.7261 35 1 4.1931 -0.4478 0.7985 36 1 3.7960 -2.1425 1.2170 37 1 0.6807 -2.3432 0.8167 38 1 -0.6855 -4.1113 1.0847 39 1 -1.8285 -6.0326 2.4522 40 1 0.7203 -3.9818 5.1830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974620157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:21 Heat of formation + Delta-G solvation = 35.637052 kcal Electronic energy + Delta-G solvation = -22275.842980 eV Core-core repulsion = 19092.062728 eV Total energy + Delta-G solvation = -3183.780252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92648 -39.24241 -37.43578 -33.69193 -32.83586 -30.85114 -30.58629 -29.02067 -27.92925 -26.68013 -25.52070 -23.67419 -22.15133 -20.60349 -20.02052 -19.19566 -18.74198 -18.15926 -16.63027 -15.74842 -15.52614 -14.62394 -14.36193 -13.84808 -13.77934 -13.67615 -13.61840 -13.33396 -13.04795 -12.90501 -12.53261 -12.05981 -11.91944 -11.79378 -11.62933 -11.19249 -11.07756 -10.89583 -10.71983 -10.29564 -10.09750 -9.83443 -9.69488 -9.60058 -9.26984 -8.72878 -8.59604 -8.30739 -8.04834 -6.71567 -5.54653 -2.97436 2.08074 2.56511 3.25004 3.44472 3.49255 3.52358 4.00197 4.15434 4.55535 5.02102 5.11426 5.22325 5.35564 5.40212 5.45615 5.60710 5.61503 5.73784 5.92879 5.96783 5.99173 6.13228 6.16764 6.23265 6.31362 6.39308 6.54228 6.58047 6.72980 6.79891 6.83498 6.91897 7.00044 7.18459 7.49269 7.63259 7.71528 7.99573 8.32527 8.49301 9.01598 9.30527 9.92318 10.57063 11.47790 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.006695 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.105755 B = 4181.246443 C = 5390.867650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.144 3.856 5 N -0.601 5.601 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.010 4.010 9 N -0.915 5.915 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.146 3.854 15 C 0.125 3.875 16 H 0.087 0.913 17 N -0.695 5.695 18 C 0.588 3.412 19 O -0.560 6.560 20 C -0.221 4.221 21 C -0.166 4.166 22 C -0.024 4.024 23 N -0.558 5.558 24 H 0.415 0.585 25 C 0.066 3.934 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.251 0.749 35 H 0.019 0.981 36 H 0.112 0.888 37 H 0.396 0.604 38 H 0.143 0.857 39 H 0.166 0.834 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.013 -0.910 4.918 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.185 4.185 4 C 0.018 3.982 5 N -0.327 5.327 6 C -0.351 4.351 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.020 3.980 15 C 0.020 3.980 16 H 0.105 0.895 17 N -0.344 5.344 18 C 0.376 3.624 19 O -0.441 6.441 20 C -0.231 4.231 21 C -0.191 4.191 22 C -0.152 4.152 23 N -0.153 5.153 24 H 0.250 0.750 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.130 0.870 37 H 0.230 0.770 38 H 0.161 0.839 39 H 0.183 0.817 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -14.381 -0.772 5.593 15.450 hybrid contribution 0.269 -1.140 -0.717 1.373 sum -14.112 -1.911 4.877 15.053 Atomic orbital electron populations 1.21695 0.94651 1.01249 1.01076 1.21848 0.94832 0.95680 0.96609 1.21681 1.01865 0.94221 1.00765 1.21401 0.90264 0.92923 0.93657 1.44464 1.30591 1.50200 1.07408 1.19064 1.06264 1.16944 0.92818 0.90596 1.24787 0.98834 1.00649 0.96319 1.69832 1.29786 1.45997 1.10766 0.86053 0.80175 0.80531 0.79051 1.20632 1.21853 1.21913 1.22310 0.89392 1.01283 0.85013 1.22473 0.93150 0.86315 0.96094 0.89532 1.45534 1.45655 1.32757 1.10457 1.17277 0.80752 0.81974 0.82399 1.90732 1.44237 1.62171 1.46934 1.20535 1.06013 1.01997 0.94524 1.22087 1.00144 0.97734 0.99126 1.21705 1.05457 1.03757 0.84261 1.41586 1.35779 1.27013 1.10902 0.74957 1.21800 0.95120 0.90381 0.99691 0.92896 0.92943 0.92877 0.91800 0.92835 0.93111 0.96153 0.95986 0.93838 0.96324 0.86995 0.76951 0.83890 0.81688 0.80755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.07 37.15 0.30 -1.52 16 2 C -0.09 -1.54 0.80 -152.68 -0.12 -1.66 16 3 C -0.13 -2.02 8.41 37.16 0.31 -1.71 16 4 C 0.14 2.96 6.41 -3.06 -0.02 2.94 16 5 N -0.60 -15.37 3.39 -170.07 -0.58 -15.95 16 6 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 8 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 9 N -0.92 -27.71 10.09 55.49 0.56 -27.15 16 10 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 C 0.15 3.70 5.27 -2.53 -0.01 3.69 16 15 C 0.13 2.56 2.67 -65.78 -0.18 2.38 16 16 H 0.09 1.81 7.44 -51.93 -0.39 1.43 16 17 N -0.70 -13.30 4.54 -52.85 -0.24 -13.54 16 18 C 0.59 11.77 7.81 -12.59 -0.10 11.67 16 19 O -0.56 -13.01 16.55 5.26 0.09 -12.92 16 20 C -0.22 -3.62 6.29 -103.35 -0.65 -4.27 16 21 C -0.17 -2.26 10.56 -37.50 -0.40 -2.66 16 22 C -0.02 -0.26 11.89 -16.83 -0.20 -0.46 16 23 N -0.56 -5.50 5.90 -12.85 -0.08 -5.58 16 24 H 0.41 2.45 8.96 -40.82 -0.37 2.08 16 25 C 0.07 0.88 11.69 -16.84 -0.20 0.68 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.72 6.48 -51.93 -0.34 0.39 16 29 H 0.06 1.14 7.57 -51.93 -0.39 0.74 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.41 7.76 -51.93 -0.40 0.01 16 33 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.02 0.51 7.80 -51.93 -0.41 0.11 16 36 H 0.11 3.32 5.88 -51.93 -0.31 3.02 16 37 H 0.40 6.94 6.30 -40.82 -0.26 6.69 16 38 H 0.14 1.77 7.69 -52.49 -0.40 1.37 16 39 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -34.68 325.54 -7.62 -42.30 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.75 Total: 8.05 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.51 Total: 2.31 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.33 Total: -62.22 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.68 -7.62 -42.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974620157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.939 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds