Wall clock time and date at job start Mon Mar 30 2020 02:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53002 * 110.78141 * 2 1 4 4 C 1.54322 * 110.72391 * 236.76120 * 2 1 3 5 5 N 1.47022 * 107.27324 * 219.44617 * 4 2 1 6 6 C 1.36934 * 125.64961 * 178.98878 * 5 4 2 7 7 H 1.08009 * 119.99682 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00235 * 179.97438 * 6 5 4 9 9 N 1.31612 * 119.99553 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00028 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47222 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47481 * 119.99752 * 10 8 6 13 13 H 1.48499 * 109.46959 * 239.99649 * 10 8 6 14 14 C 1.47424 * 108.70057 * 358.93585 * 5 4 2 15 15 C 1.54904 * 104.83355 * 24.13387 * 14 5 4 16 16 H 1.08998 * 111.03633 * 204.90187 * 15 14 5 17 17 N 1.46496 * 111.00603 * 81.06089 * 15 14 5 18 18 C 1.34785 * 119.99750 * 92.80637 * 17 15 14 19 19 O 1.21622 * 119.99947 * 359.97438 * 18 17 15 20 20 C 1.47262 * 119.99606 * 180.02562 * 18 17 15 21 21 C 1.46683 * 126.94309 * 359.95564 * 20 18 17 22 22 C 1.34485 * 106.33089 * 180.02562 * 21 20 18 23 23 N 1.36447 * 108.85967 * 0.02562 * 22 21 20 24 24 H 0.96996 * 124.85782 * 180.02562 * 23 22 21 25 25 C 1.34665 * 110.29669 * 359.97438 * 23 22 21 26 26 H 1.09005 * 109.47717 * 296.76060 * 1 2 3 27 27 H 1.08997 * 109.47657 * 56.76330 * 1 2 3 28 28 H 1.09001 * 109.47564 * 176.76222 * 1 2 3 29 29 H 1.08996 * 109.47706 * 183.23427 * 3 2 1 30 30 H 1.09006 * 109.47174 * 303.24189 * 3 2 1 31 31 H 1.09003 * 109.46878 * 63.23418 * 3 2 1 32 32 H 1.09003 * 109.87696 * 338.85973 * 4 2 1 33 33 H 1.08998 * 109.88343 * 100.02059 * 4 2 1 34 34 H 0.97005 * 119.99889 * 180.02562 * 9 8 6 35 35 H 1.08998 * 110.36847 * 265.28674 * 14 5 4 36 36 H 1.09002 * 110.36657 * 142.97395 * 14 5 4 37 37 H 0.96999 * 120.00404 * 272.79948 * 17 15 14 38 38 H 1.07994 * 126.83829 * 0.07224 * 21 20 18 39 39 H 1.08000 * 125.57683 * 180.02562 * 22 21 20 40 40 H 1.07999 * 125.80306 * 179.74142 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 -1.2072 5 7 3.2445 -1.5507 -0.7389 6 6 4.0044 -2.3967 -1.5017 7 1 3.7613 -2.5504 -2.5428 8 6 5.0872 -3.0568 -0.9370 9 7 5.3836 -2.8690 0.3315 10 14 6.1234 -4.2113 -1.9774 11 1 5.5850 -4.2487 -3.3609 12 1 7.5271 -3.7276 -2.0050 13 1 6.0815 -5.5760 -1.3934 14 6 3.4632 -1.2497 0.6876 15 6 2.0789 -0.7955 1.2138 16 1 2.1842 -0.1520 2.0872 17 7 1.2271 -1.9488 1.5144 18 6 1.2025 -2.4617 2.7606 19 8 1.8878 -1.9674 3.6353 20 6 0.3466 -3.6214 3.0626 21 6 -0.5350 -4.3329 2.1309 22 6 -1.1179 -5.3169 2.8385 23 7 -0.6647 -5.2634 4.1244 24 1 -0.9352 -5.8680 4.8331 25 6 0.2126 -4.2520 4.2689 26 1 -0.3635 0.4627 0.9176 27 1 -0.3634 0.5632 -0.8595 28 1 -0.3634 -1.0260 -0.0580 29 1 3.1609 1.4062 -0.0580 30 1 1.6750 1.9701 -0.8595 31 1 1.7689 1.9344 0.9176 32 1 1.3129 -1.4758 -1.5775 33 1 2.3740 -0.1024 -1.9977 34 1 6.1405 -3.3299 0.7261 35 1 4.1931 -0.4478 0.7985 36 1 3.7960 -2.1425 1.2170 37 1 0.6807 -2.3432 0.8167 38 1 -0.6855 -4.1113 1.0847 39 1 -1.8285 -6.0326 2.4522 40 1 0.7203 -3.9818 5.1830 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974620157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:20 Heat of formation + Delta-G solvation = 11.148174 kcal Electronic energy + Delta-G solvation = -22276.904898 eV Core-core repulsion = 19092.062728 eV Total energy + Delta-G solvation = -3184.842169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.95742 -40.80952 -39.04823 -35.61980 -34.41302 -32.58103 -31.91971 -30.08427 -29.58241 -27.99822 -27.38207 -25.35360 -23.66823 -21.96532 -21.44679 -20.67463 -19.89878 -19.44389 -18.67410 -17.33754 -17.02139 -16.48632 -15.83948 -15.57457 -15.34457 -14.95560 -14.73254 -14.60756 -14.54002 -14.03723 -13.85219 -13.68763 -13.62173 -13.06000 -13.00734 -12.93789 -12.81455 -12.60333 -12.54432 -12.03055 -11.76238 -11.73514 -11.40881 -11.32591 -10.89422 -10.72523 -9.95776 -9.62816 -9.23279 -8.81216 -7.72766 -5.18134 0.87113 1.44784 1.46302 1.56656 1.61301 2.26911 2.50396 2.65483 2.75209 3.36486 3.61843 3.72476 4.01725 4.09815 4.12221 4.23635 4.43089 4.45960 4.56413 4.57967 4.78681 4.86046 4.90956 4.94454 5.03013 5.07417 5.12774 5.20515 5.23395 5.34967 5.36909 5.51074 5.56499 5.76822 5.80934 5.88493 6.00860 6.33949 6.71518 6.84605 7.11609 7.49338 7.81643 8.46136 9.27923 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013516 B = 0.006695 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.105755 B = 4181.246443 C = 5390.867650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.125 4.125 4 C 0.139 3.861 5 N -0.617 5.617 6 C -0.230 4.230 7 H 0.085 0.915 8 C -0.072 4.072 9 N -0.949 5.949 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.296 1.296 13 H -0.296 1.296 14 C 0.155 3.845 15 C 0.136 3.864 16 H 0.077 0.923 17 N -0.689 5.689 18 C 0.579 3.421 19 O -0.606 6.606 20 C -0.267 4.267 21 C -0.193 4.193 22 C 0.001 3.999 23 N -0.536 5.536 24 H 0.437 0.563 25 C 0.070 3.930 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.027 0.973 34 H 0.242 0.758 35 H -0.015 1.015 36 H 0.066 0.934 37 H 0.404 0.596 38 H 0.149 0.851 39 H 0.210 0.790 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.062 -1.888 3.891 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.076 4.076 3 C -0.183 4.183 4 C 0.014 3.986 5 N -0.343 5.343 6 C -0.359 4.359 7 H 0.103 0.897 8 C -0.264 4.264 9 N -0.600 5.600 10 Si 0.807 3.193 11 H -0.185 1.185 12 H -0.223 1.223 13 H -0.223 1.223 14 C 0.028 3.972 15 C 0.029 3.971 16 H 0.095 0.905 17 N -0.338 5.338 18 C 0.369 3.631 19 O -0.490 6.490 20 C -0.277 4.277 21 C -0.217 4.217 22 C -0.127 4.127 23 N -0.132 5.132 24 H 0.277 0.723 25 C -0.068 4.068 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.003 0.997 36 H 0.084 0.916 37 H 0.241 0.759 38 H 0.167 0.833 39 H 0.227 0.773 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -17.501 -1.766 4.536 18.165 hybrid contribution 1.184 -0.864 -0.376 1.513 sum -16.316 -2.630 4.160 17.042 Atomic orbital electron populations 1.21655 0.91205 1.02228 1.02823 1.21837 0.97379 0.95459 0.92913 1.21685 1.00002 0.93641 1.02974 1.21638 0.88818 0.93069 0.95061 1.44684 1.31731 1.50456 1.07395 1.19493 1.06325 1.16673 0.93427 0.89676 1.25662 1.00519 1.02773 0.97455 1.70151 1.30015 1.47199 1.12587 0.84994 0.78047 0.77890 0.78327 1.18548 1.22310 1.22307 1.21937 0.91767 0.98116 0.85338 1.22156 0.91097 0.86962 0.96863 0.90496 1.45438 1.45158 1.32436 1.10718 1.17961 0.80558 0.82580 0.81956 1.90686 1.46379 1.63839 1.48133 1.20474 1.07915 1.02356 0.97000 1.22259 1.00866 0.98919 0.99616 1.22319 1.04146 1.02639 0.83619 1.41602 1.34012 1.25916 1.11643 0.72285 1.21907 0.95194 0.90659 0.99053 0.91909 0.90290 0.92466 0.94767 0.90040 0.91395 0.94755 0.95507 0.94874 0.99734 0.91580 0.75932 0.83340 0.77305 0.80103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.07 71.98 0.58 -2.47 16 2 C -0.07 -2.52 0.80 -51.00 -0.04 -2.56 16 3 C -0.13 -3.82 8.41 71.98 0.61 -3.21 16 4 C 0.14 5.62 6.41 86.73 0.56 6.17 16 5 N -0.62 -32.35 3.39 -691.99 -2.35 -34.70 16 6 C -0.23 -13.14 10.27 84.03 0.86 -12.27 16 7 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 8 C -0.07 -4.25 5.49 84.86 0.47 -3.78 16 9 N -0.95 -60.50 10.09 21.65 0.22 -60.28 16 10 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 13 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 14 C 0.15 8.35 5.27 86.85 0.46 8.81 16 15 C 0.14 5.72 2.67 46.38 0.12 5.85 16 16 H 0.08 3.39 7.44 -2.39 -0.02 3.37 16 17 N -0.69 -26.98 4.54 -439.37 -2.00 -28.97 16 18 C 0.58 24.08 7.81 86.61 0.68 24.75 16 19 O -0.61 -29.79 16.55 -4.10 -0.07 -29.86 16 20 C -0.27 -8.76 6.29 -19.04 -0.12 -8.88 16 21 C -0.19 -4.91 10.56 23.62 0.25 -4.66 16 22 C 0.00 0.02 11.89 83.12 0.99 1.00 16 23 N -0.54 -8.89 5.90 -194.55 -1.15 -10.03 16 24 H 0.44 3.47 8.96 -92.71 -0.83 2.64 16 25 C 0.07 1.80 11.69 83.91 0.98 2.79 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.40 6.48 -2.39 -0.02 1.38 16 29 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 30 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.03 1.31 7.76 -2.39 -0.02 1.29 16 33 H 0.03 1.08 7.84 -2.39 -0.02 1.06 16 34 H 0.24 15.10 8.31 -92.70 -0.77 14.33 16 35 H -0.02 -0.89 7.80 -2.39 -0.02 -0.91 16 36 H 0.07 4.21 5.88 -2.39 -0.01 4.20 16 37 H 0.40 14.16 6.30 -92.71 -0.58 13.57 16 38 H 0.15 3.45 7.69 -2.91 -0.02 3.43 16 39 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.18 4.30 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -80.91 325.54 2.72 -78.19 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: -0.36 Total: 24.66 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 6.39 Total: 11.52 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -5.27 Total: -133.99 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.07 Total: -29.86 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -80.91 2.72 -78.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974620157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.338 kcal (2) G-P(sol) polarization free energy of solvation -80.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds