Wall clock time and date at job start Mon Mar 30 2020 02:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34484 * 126.83637 * 2 1 4 4 N 1.36452 * 108.86077 * 180.26020 * 3 2 1 5 5 H 0.96992 * 124.85157 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29433 * 359.97438 * 4 3 2 7 7 C 1.36773 * 108.40067 * 359.97438 * 6 4 3 8 8 C 1.47253 * 126.94446 * 180.02562 * 7 6 4 9 9 O 1.21632 * 120.00074 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99978 * 359.95851 * 8 7 6 11 11 C 1.47020 * 125.65099 * 0.02562 * 10 8 7 12 12 C 1.54317 * 107.27491 * 181.02089 * 11 10 8 13 13 C 1.55165 * 102.94262 * 22.19464 * 12 11 10 14 14 H 1.08999 * 111.00150 * 82.60888 * 13 12 11 15 15 N 1.46494 * 111.00224 * 206.42353 * 13 12 11 16 16 C 1.46502 * 120.00384 * 60.00145 * 15 13 12 17 17 C 1.36943 * 119.99959 * 239.99625 * 15 13 12 18 18 H 1.07998 * 119.99975 * 23.24531 * 17 15 13 19 19 C 1.38816 * 119.99903 * 203.25016 * 17 15 13 20 20 N 1.31620 * 120.00111 * 13.76263 * 19 17 15 21 21 Si 1.86795 * 119.99691 * 193.76823 * 19 17 15 22 22 H 1.48502 * 109.47539 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47270 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47017 * 239.99890 * 21 19 17 25 25 C 1.47424 * 125.64846 * 179.71559 * 10 8 7 26 26 H 1.08998 * 109.47503 * 269.69148 * 1 2 3 27 27 H 1.09003 * 109.47100 * 29.69405 * 1 2 3 28 28 H 1.09007 * 109.47051 * 149.68701 * 1 2 3 29 29 H 1.08002 * 125.57214 * 0.23043 * 3 2 1 30 30 H 1.08002 * 125.79782 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.87858 * 300.43906 * 11 10 8 32 32 H 1.09000 * 109.88134 * 61.44592 * 11 10 8 33 33 H 1.09009 * 110.72036 * 140.55420 * 12 11 10 34 34 H 1.09003 * 110.72382 * 263.65406 * 12 11 10 35 35 H 1.08996 * 109.47702 * 95.15358 * 16 15 13 36 36 H 1.08996 * 109.47265 * 215.15849 * 16 15 13 37 37 H 1.09003 * 109.46562 * 335.15519 * 16 15 13 38 38 H 0.96996 * 119.99985 * 179.97438 * 20 19 17 39 39 H 1.08995 * 110.37012 * 274.74930 * 25 10 8 40 40 H 1.09004 * 110.37089 * 37.07110 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6552 -0.0059 5 1 4.3840 1.2413 -0.0074 6 6 3.6656 -0.6902 -0.0092 7 6 2.3863 -1.1741 -0.0049 8 6 1.9749 -2.5880 -0.0058 9 8 0.7936 -2.8777 -0.0011 10 7 2.9073 -3.5612 -0.0123 11 6 4.3627 -3.3534 -0.0182 12 6 5.0245 -4.7471 -0.0507 13 6 3.9046 -5.6500 -0.6324 14 1 3.8813 -5.5914 -1.7205 15 7 4.0640 -7.0366 -0.1873 16 6 4.0348 -7.3550 1.2424 17 6 4.2400 -8.0352 -1.1077 18 1 4.6309 -7.8037 -2.0875 19 6 3.9160 -9.3450 -0.7813 20 7 3.1966 -9.5971 0.2916 21 14 4.5012 -10.7495 -1.8648 22 1 5.2863 -10.2042 -3.0012 23 1 5.3547 -11.6669 -1.0680 24 1 3.3272 -11.4941 -2.3870 25 6 2.6367 -5.0104 -0.0080 26 1 -0.3634 -0.0055 1.0276 27 1 -0.3633 0.8927 -0.5091 28 1 -0.3633 -0.8872 -0.5187 29 1 1.9868 2.1059 0.0035 30 1 4.5664 -1.2860 -0.0143 31 1 4.6523 -2.7848 -0.9020 32 1 4.6644 -2.8181 0.8821 33 1 5.8966 -4.7448 -0.7047 34 1 5.2987 -5.0674 0.9544 35 1 3.0267 -7.6559 1.5272 36 1 4.7288 -8.1702 1.4473 37 1 4.3274 -6.4758 1.8164 38 1 2.9699 -10.5123 0.5195 39 1 2.4924 -5.3664 1.0120 40 1 1.7605 -5.2346 -0.6164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980389786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:52 Heat of formation + Delta-G solvation = 46.376071 kcal Electronic energy + Delta-G solvation = -21647.540542 eV Core-core repulsion = 18464.225968 eV Total energy + Delta-G solvation = -3183.314573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.25521 -39.21067 -37.13104 -34.77998 -32.43112 -31.77581 -30.15537 -29.62523 -27.50265 -26.55333 -26.03624 -24.17896 -22.59668 -21.36009 -20.08620 -19.24881 -18.72821 -17.57103 -17.00411 -16.20670 -15.78664 -14.86874 -14.75465 -14.31140 -13.87791 -13.73761 -13.42083 -13.28106 -13.05021 -12.67281 -12.55635 -12.35196 -12.34985 -12.18332 -11.86142 -11.48096 -11.19537 -10.89903 -10.74808 -10.48677 -10.43578 -10.24653 -9.87009 -9.81118 -9.45986 -8.67802 -8.57771 -8.33982 -8.14991 -6.78057 -5.74827 -3.22629 1.82675 2.36494 3.08731 3.37277 3.42920 3.46273 3.48383 3.79799 4.47790 4.79223 4.87817 5.00077 5.04523 5.24132 5.29202 5.39615 5.45335 5.49245 5.69177 5.80118 5.85782 5.89228 5.91765 6.04742 6.09542 6.28769 6.35217 6.42924 6.63280 6.68676 6.77727 6.85138 6.85183 6.93788 7.33971 7.34249 7.72274 7.79661 7.99286 8.36691 8.66677 9.20084 9.82670 10.31738 11.29513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037142 B = 0.003777 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.687119 B = 7411.957988 C = 7753.301852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.111 4.111 3 C -0.031 4.031 4 N -0.554 5.554 5 H 0.415 0.585 6 C 0.032 3.968 7 C -0.218 4.218 8 C 0.597 3.403 9 O -0.548 6.548 10 N -0.613 5.613 11 C 0.100 3.900 12 C -0.155 4.155 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.585 5.585 16 C 0.159 3.841 17 C -0.261 4.261 18 H 0.071 0.929 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.906 3.094 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.090 3.910 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.002 0.998 38 H 0.253 0.747 39 H 0.067 0.933 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 20.950 0.541 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.159 4.159 4 N -0.148 5.148 5 H 0.251 0.749 6 C -0.103 4.103 7 C -0.228 4.228 8 C 0.387 3.613 9 O -0.427 6.427 10 N -0.346 5.346 11 C -0.024 4.024 12 C -0.195 4.195 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.305 5.305 16 C 0.015 3.985 17 C -0.391 4.391 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.736 3.264 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C -0.034 4.034 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.200 0.800 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.162 20.733 0.619 20.982 hybrid contribution 0.740 -0.510 -0.413 0.989 sum 3.902 20.224 0.206 20.598 Atomic orbital electron populations 1.20185 0.89412 1.02476 1.01923 1.20570 0.95637 0.90390 1.05143 1.21539 0.82601 0.99035 1.12704 1.41533 1.08130 1.06796 1.58343 0.74864 1.22756 0.99461 0.83622 1.04508 1.20431 0.92645 0.92862 1.16870 1.17060 0.84595 0.83356 0.76271 1.90735 1.16793 1.83494 1.51651 1.48332 1.06065 1.07289 1.72954 1.22247 0.81116 0.98995 1.00033 1.23247 0.99865 0.93459 1.02941 1.21504 0.89943 0.85103 0.97219 0.90379 1.43865 1.83112 1.00638 1.02888 1.20806 1.00423 0.94928 0.82389 1.19257 1.36767 0.86746 0.96281 0.91171 1.25062 0.98118 0.98232 0.97980 1.70083 1.38629 1.18883 1.27084 0.86169 0.78055 0.82400 0.79799 1.20264 1.21596 1.21676 1.23073 1.01144 0.77371 1.01823 0.91917 0.92573 0.90224 0.81638 0.80016 0.91810 0.92058 0.90663 0.90522 0.94841 0.93985 0.97941 0.93671 0.91476 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.97 36.00 0.36 -0.68 16 2 C -0.11 -1.46 6.35 -102.54 -0.65 -2.11 16 3 C -0.03 -0.30 11.82 -16.82 -0.20 -0.50 16 4 N -0.55 -4.49 5.90 -12.84 -0.08 -4.56 16 5 H 0.42 1.74 8.96 -40.82 -0.37 1.38 16 6 C 0.03 0.34 10.42 -16.84 -0.18 0.17 16 7 C -0.22 -3.20 6.26 -103.35 -0.65 -3.85 16 8 C 0.60 10.92 7.84 -12.60 -0.10 10.82 16 9 O -0.55 -11.91 15.58 5.25 0.08 -11.83 16 10 N -0.61 -10.56 3.32 -171.71 -0.57 -11.13 16 11 C 0.10 1.32 5.00 -3.07 -0.02 1.31 16 12 C -0.15 -2.41 6.49 -24.90 -0.16 -2.57 16 13 C 0.17 3.46 3.55 -65.66 -0.23 3.23 16 14 H 0.08 1.59 7.96 -51.93 -0.41 1.18 16 15 N -0.58 -14.27 2.96 -170.89 -0.51 -14.77 16 16 C 0.16 3.82 7.56 59.85 0.45 4.27 16 17 C -0.26 -7.03 9.60 -15.05 -0.14 -7.18 16 18 H 0.07 1.84 7.87 -52.49 -0.41 1.43 16 19 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 20 N -0.90 -26.16 10.77 55.49 0.60 -25.56 16 21 Si 0.91 21.61 29.58 -169.99 -5.03 16.58 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.09 1.81 6.46 -2.41 -0.02 1.79 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.20 6.87 -51.92 -0.36 0.84 16 29 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.18 1.54 4.42 -52.49 -0.23 1.31 16 31 H 0.06 0.71 6.87 -51.93 -0.36 0.35 16 32 H 0.06 0.69 7.02 -51.93 -0.36 0.32 16 33 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.08 1.24 6.47 -51.93 -0.34 0.90 16 35 H 0.03 0.89 7.33 -51.93 -0.38 0.51 16 36 H 0.04 1.08 7.38 -51.93 -0.38 0.70 16 37 H 0.00 0.04 6.37 -51.93 -0.33 -0.29 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 1.43 6.96 -51.93 -0.36 1.07 16 40 H 0.07 1.61 8.03 -51.93 -0.42 1.20 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -33.64 319.14 -7.85 -41.48 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.54 Total: 0.22 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -1.62 Total: 4.75 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.55 Total: -56.02 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.64 -7.85 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980389786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.858 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds