Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34484 * 126.83637 * 2 1 4 4 N 1.36452 * 108.86077 * 180.26020 * 3 2 1 5 5 H 0.96992 * 124.85157 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29433 * 359.97438 * 4 3 2 7 7 C 1.36773 * 108.40067 * 359.97438 * 6 4 3 8 8 C 1.47253 * 126.94446 * 180.02562 * 7 6 4 9 9 O 1.21632 * 120.00074 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99978 * 359.95851 * 8 7 6 11 11 C 1.47020 * 125.65099 * 0.02562 * 10 8 7 12 12 C 1.54317 * 107.27491 * 181.02089 * 11 10 8 13 13 C 1.55165 * 102.94262 * 22.19464 * 12 11 10 14 14 H 1.08999 * 111.00150 * 82.60888 * 13 12 11 15 15 N 1.46494 * 111.00224 * 206.42353 * 13 12 11 16 16 C 1.46502 * 120.00384 * 60.00145 * 15 13 12 17 17 C 1.36943 * 119.99959 * 239.99625 * 15 13 12 18 18 H 1.07998 * 119.99975 * 23.24531 * 17 15 13 19 19 C 1.38816 * 119.99903 * 203.25016 * 17 15 13 20 20 N 1.31620 * 120.00111 * 13.76263 * 19 17 15 21 21 Si 1.86795 * 119.99691 * 193.76823 * 19 17 15 22 22 H 1.48502 * 109.47539 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47270 * 119.99901 * 21 19 17 24 24 H 1.48501 * 109.47017 * 239.99890 * 21 19 17 25 25 C 1.47424 * 125.64846 * 179.71559 * 10 8 7 26 26 H 1.08998 * 109.47503 * 269.69148 * 1 2 3 27 27 H 1.09003 * 109.47100 * 29.69405 * 1 2 3 28 28 H 1.09007 * 109.47051 * 149.68701 * 1 2 3 29 29 H 1.08002 * 125.57214 * 0.23043 * 3 2 1 30 30 H 1.08002 * 125.79782 * 179.97438 * 6 4 3 31 31 H 1.09003 * 109.87858 * 300.43906 * 11 10 8 32 32 H 1.09000 * 109.88134 * 61.44592 * 11 10 8 33 33 H 1.09009 * 110.72036 * 140.55420 * 12 11 10 34 34 H 1.09003 * 110.72382 * 263.65406 * 12 11 10 35 35 H 1.08996 * 109.47702 * 95.15358 * 16 15 13 36 36 H 1.08996 * 109.47265 * 215.15849 * 16 15 13 37 37 H 1.09003 * 109.46562 * 335.15519 * 16 15 13 38 38 H 0.96996 * 119.99985 * 179.97438 * 20 19 17 39 39 H 1.08995 * 110.37012 * 274.74930 * 25 10 8 40 40 H 1.09004 * 110.37089 * 37.07110 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0763 0.0000 4 7 3.6111 0.6552 -0.0059 5 1 4.3840 1.2413 -0.0074 6 6 3.6656 -0.6902 -0.0092 7 6 2.3863 -1.1741 -0.0049 8 6 1.9749 -2.5880 -0.0058 9 8 0.7936 -2.8777 -0.0011 10 7 2.9073 -3.5612 -0.0123 11 6 4.3627 -3.3534 -0.0182 12 6 5.0245 -4.7471 -0.0507 13 6 3.9046 -5.6500 -0.6324 14 1 3.8813 -5.5914 -1.7205 15 7 4.0640 -7.0366 -0.1873 16 6 4.0348 -7.3550 1.2424 17 6 4.2400 -8.0352 -1.1077 18 1 4.6309 -7.8037 -2.0875 19 6 3.9160 -9.3450 -0.7813 20 7 3.1966 -9.5971 0.2916 21 14 4.5012 -10.7495 -1.8648 22 1 5.2863 -10.2042 -3.0012 23 1 5.3547 -11.6669 -1.0680 24 1 3.3272 -11.4941 -2.3870 25 6 2.6367 -5.0104 -0.0080 26 1 -0.3634 -0.0055 1.0276 27 1 -0.3633 0.8927 -0.5091 28 1 -0.3633 -0.8872 -0.5187 29 1 1.9868 2.1059 0.0035 30 1 4.5664 -1.2860 -0.0143 31 1 4.6523 -2.7848 -0.9020 32 1 4.6644 -2.8181 0.8821 33 1 5.8966 -4.7448 -0.7047 34 1 5.2987 -5.0674 0.9544 35 1 3.0267 -7.6559 1.5272 36 1 4.7288 -8.1702 1.4473 37 1 4.3274 -6.4758 1.8164 38 1 2.9699 -10.5123 0.5195 39 1 2.4924 -5.3664 1.0120 40 1 1.7605 -5.2346 -0.6164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980389786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = 23.240693 kcal Electronic energy + Delta-G solvation = -21648.543767 eV Core-core repulsion = 18464.225968 eV Total energy + Delta-G solvation = -3184.317798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.14421 -40.55458 -38.66966 -36.55059 -33.55603 -33.30958 -31.59614 -30.88326 -28.94004 -28.05821 -27.43108 -25.65934 -24.23885 -22.47865 -21.16691 -20.81267 -19.68304 -18.93264 -18.53317 -17.52731 -17.38909 -16.46421 -16.10433 -15.63803 -15.17873 -15.01026 -14.74318 -14.56712 -14.34324 -14.25309 -13.94481 -13.64023 -13.56661 -13.40997 -13.26401 -12.98272 -12.79576 -12.43292 -12.39312 -12.26595 -12.09899 -12.02341 -11.77329 -11.41053 -10.88321 -10.64691 -9.76901 -9.42201 -9.14686 -8.78494 -7.83308 -5.33797 0.81050 1.47806 1.48945 1.52497 1.59690 2.01668 2.48398 2.55074 2.57396 3.28677 3.55930 3.77339 3.94099 3.99505 4.19103 4.20865 4.27795 4.33502 4.46809 4.53415 4.63760 4.73180 4.80599 4.86649 4.91223 4.94667 5.01537 5.13142 5.21496 5.28970 5.34934 5.37308 5.45515 5.65695 5.70748 5.86028 5.99864 6.31879 6.68225 6.75836 7.13311 7.31622 7.84118 8.28745 9.19609 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037142 B = 0.003777 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.687119 B = 7411.957988 C = 7753.301852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.155 4.155 3 C -0.003 4.003 4 N -0.531 5.531 5 H 0.440 0.560 6 C 0.060 3.940 7 C -0.266 4.266 8 C 0.587 3.413 9 O -0.603 6.603 10 N -0.614 5.614 11 C 0.100 3.900 12 C -0.139 4.139 13 C 0.166 3.834 14 H 0.073 0.927 15 N -0.600 5.600 16 C 0.178 3.822 17 C -0.267 4.267 18 H 0.077 0.923 19 C -0.053 4.053 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.100 3.900 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.206 0.794 30 H 0.210 0.790 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.073 0.927 35 H -0.002 1.002 36 H 0.019 0.981 37 H 0.036 0.964 38 H 0.248 0.752 39 H 0.047 0.953 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.953 24.419 -0.110 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.161 4.161 3 C -0.132 4.132 4 N -0.127 5.127 5 H 0.281 0.719 6 C -0.078 4.078 7 C -0.276 4.276 8 C 0.380 3.620 9 O -0.486 6.486 10 N -0.347 5.347 11 C -0.021 4.021 12 C -0.178 4.178 13 C 0.057 3.943 14 H 0.091 0.909 15 N -0.322 5.322 16 C 0.033 3.967 17 C -0.397 4.397 18 H 0.095 0.905 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.216 1.216 24 H -0.224 1.224 25 C -0.026 4.026 26 H 0.075 0.925 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.222 0.778 30 H 0.227 0.773 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.016 0.984 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.369 24.286 -0.048 25.107 hybrid contribution -0.252 -1.449 -0.224 1.488 sum 6.117 22.836 -0.272 23.643 Atomic orbital electron populations 1.20092 0.90186 1.01919 1.01400 1.20803 0.95939 0.91364 1.08023 1.21982 0.82342 0.99653 1.09193 1.41575 1.08769 1.06280 1.56035 0.71924 1.22942 0.98517 0.84731 1.01648 1.20292 0.95181 0.90900 1.21264 1.17783 0.83976 0.85039 0.75176 1.90695 1.19143 1.84490 1.54241 1.48360 1.08013 1.05491 1.72798 1.22536 0.78040 0.98249 1.03304 1.23095 0.98815 0.93137 1.02774 1.21666 0.91705 0.83768 0.97176 0.90876 1.44058 1.83448 1.02062 1.02595 1.20485 0.97757 0.95424 0.83050 1.19645 1.35661 0.87581 0.96799 0.90548 1.25865 0.98724 1.00704 0.99492 1.70262 1.40377 1.18831 1.29013 0.85140 0.77230 0.79202 0.78468 1.18614 1.21645 1.22382 1.22663 1.00001 0.80079 0.99835 0.92481 0.89768 0.94073 0.77776 0.77338 0.88401 0.88690 0.88181 0.90830 0.98408 0.96263 0.94606 0.94279 0.93452 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.00 9.97 71.23 0.71 -1.29 16 2 C -0.16 -3.83 6.35 -18.52 -0.12 -3.95 16 3 C 0.00 -0.05 11.82 83.11 0.98 0.93 16 4 N -0.53 -5.67 5.90 -194.55 -1.15 -6.82 16 5 H 0.44 0.81 8.96 -92.71 -0.83 -0.02 16 6 C 0.06 1.00 10.42 83.92 0.87 1.87 16 7 C -0.27 -7.41 6.26 -19.04 -0.12 -7.53 16 8 C 0.59 21.92 7.84 86.61 0.68 22.60 16 9 O -0.60 -28.15 15.58 -4.13 -0.06 -28.22 16 10 N -0.61 -20.93 3.32 -815.42 -2.71 -23.64 16 11 C 0.10 2.29 5.00 86.73 0.43 2.72 16 12 C -0.14 -3.90 6.49 31.78 0.21 -3.69 16 13 C 0.17 6.62 3.55 46.47 0.16 6.78 16 14 H 0.07 2.97 7.96 -2.39 -0.02 2.95 16 15 N -0.60 -29.76 2.96 -694.58 -2.05 -31.82 16 16 C 0.18 8.79 7.56 127.77 0.97 9.76 16 17 C -0.27 -14.53 9.60 84.03 0.81 -13.73 16 18 H 0.08 3.98 7.87 -2.91 -0.02 3.96 16 19 C -0.05 -2.96 5.08 84.86 0.43 -2.52 16 20 N -0.94 -56.49 10.77 21.65 0.23 -56.26 16 21 Si 0.97 45.10 29.58 68.60 2.03 47.13 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 25 C 0.10 4.18 6.46 86.93 0.56 4.74 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.34 6.87 -2.38 -0.02 1.32 16 29 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.21 2.22 4.42 -2.91 -0.01 2.21 16 31 H 0.10 1.64 6.87 -2.39 -0.02 1.63 16 32 H 0.10 1.62 7.02 -2.39 -0.02 1.60 16 33 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.07 2.15 6.47 -2.39 -0.02 2.14 16 35 H 0.00 -0.14 7.33 -2.39 -0.02 -0.15 16 36 H 0.02 1.00 7.38 -2.39 -0.02 0.98 16 37 H 0.04 1.49 6.37 -2.39 -0.02 1.47 16 38 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.05 2.14 6.96 -2.39 -0.02 2.12 16 40 H 0.04 1.76 8.03 -2.38 -0.02 1.74 16 Total: -1.00 -80.32 319.14 3.10 -77.23 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.23 Total: 5.71 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.58 Total: 16.69 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -5.68 Total: -118.54 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.06 Total: -28.22 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -80.32 3.10 -77.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980389786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.466 kcal (2) G-P(sol) polarization free energy of solvation -80.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds