Wall clock time and date at job start Mon Mar 30 2020 02:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34481 * 126.83559 * 2 1 4 4 N 1.36447 * 108.85661 * 179.97438 * 3 2 1 5 5 H 0.97002 * 124.84835 * 180.02562 * 4 3 2 6 6 C 1.34654 * 110.30088 * 0.02562 * 4 3 2 7 7 C 1.36776 * 108.39323 * 359.74740 * 6 4 3 8 8 C 1.47267 * 126.93990 * 180.24403 * 7 6 4 9 9 O 1.21623 * 119.99495 * 180.15549 * 8 7 6 10 10 N 1.34772 * 120.00017 * 0.15554 * 8 7 6 11 11 C 1.47022 * 125.65008 * 359.69458 * 10 8 7 12 12 C 1.54331 * 107.26596 * 178.84900 * 11 10 8 13 13 C 1.55153 * 103.02049 * 338.13319 * 12 11 10 14 14 H 1.08997 * 111.00919 * 277.23325 * 13 12 11 15 15 N 1.46502 * 111.00283 * 153.38228 * 13 12 11 16 16 C 1.46503 * 120.00027 * 306.35238 * 15 13 12 17 17 C 1.36936 * 120.00089 * 126.35337 * 15 13 12 18 18 H 1.08002 * 120.00096 * 328.89264 * 17 15 13 19 19 C 1.38817 * 120.00391 * 148.89115 * 17 15 13 20 20 N 1.31612 * 120.00169 * 153.35445 * 19 17 15 21 21 Si 1.86798 * 119.99594 * 333.35918 * 19 17 15 22 22 H 1.48504 * 109.47097 * 94.68650 * 21 19 17 23 23 H 1.48496 * 109.46988 * 214.68152 * 21 19 17 24 24 H 1.48498 * 109.47551 * 334.68592 * 21 19 17 25 25 C 1.47421 * 125.64777 * 179.97438 * 10 8 7 26 26 H 1.08993 * 109.46787 * 90.02093 * 1 2 3 27 27 H 1.08998 * 109.46642 * 330.02363 * 1 2 3 28 28 H 1.08999 * 109.46692 * 210.02279 * 1 2 3 29 29 H 1.07999 * 125.57117 * 359.94745 * 3 2 1 30 30 H 1.07994 * 125.80211 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.87843 * 298.38994 * 11 10 8 32 32 H 1.08997 * 109.88477 * 59.55296 * 11 10 8 33 33 H 1.09002 * 110.84982 * 219.66986 * 12 11 10 34 34 H 1.09002 * 110.67285 * 96.52352 * 12 11 10 35 35 H 1.08999 * 109.46743 * 95.59867 * 16 15 13 36 36 H 1.09004 * 109.46901 * 215.59351 * 16 15 13 37 37 H 1.09000 * 109.47222 * 335.59518 * 16 15 13 38 38 H 0.97001 * 119.99807 * 179.97438 * 20 19 17 39 39 H 1.09002 * 110.37177 * 322.93307 * 25 10 8 40 40 H 1.09000 * 110.36568 * 85.14758 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6112 0.6552 0.0006 5 1 4.3841 1.2413 0.0011 6 6 3.6657 -0.6903 0.0004 7 6 2.3864 -1.1741 0.0054 8 6 1.9749 -2.5881 0.0121 9 8 0.7937 -2.8776 0.0132 10 7 2.9073 -3.5612 0.0169 11 6 4.3628 -3.3534 0.0098 12 6 5.0246 -4.7471 0.0488 13 6 3.9077 -5.6481 0.6385 14 1 3.8890 -5.5859 1.7265 15 7 4.0648 -7.0361 0.1967 16 6 4.1685 -7.3428 -1.2321 17 6 4.1147 -8.0468 1.1193 18 1 4.5324 -7.8641 2.0984 19 6 3.6284 -9.3062 0.7963 20 7 4.1090 -10.3721 1.4005 21 14 2.2920 -9.4881 -0.4960 22 1 2.9137 -9.7719 -1.8145 23 1 1.3911 -10.6078 -0.1223 24 1 1.5088 -8.2291 -0.5789 25 6 2.6368 -5.0104 0.0243 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3632 0.8902 0.5135 28 1 -0.3633 -0.8898 0.5142 29 1 1.9869 2.1058 -0.0008 30 1 4.5665 -1.2860 0.0004 31 1 4.6575 -2.8262 -0.8976 32 1 4.6596 -2.7794 0.8876 33 1 5.8999 -4.7429 0.6985 34 1 5.2935 -5.0736 -0.9558 35 1 5.2192 -7.4181 -1.5121 36 1 3.6689 -8.2896 -1.4376 37 1 3.6945 -6.5491 -1.8094 38 1 3.7689 -11.2521 1.1750 39 1 1.7657 -5.2306 0.6414 40 1 2.4820 -5.3725 -0.9921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980389799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:55 Heat of formation + Delta-G solvation = 54.920432 kcal Electronic energy + Delta-G solvation = -21757.489040 eV Core-core repulsion = 18574.544979 eV Total energy + Delta-G solvation = -3182.944062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.31753 -39.34449 -37.30271 -34.98436 -32.48440 -31.93076 -30.59465 -29.80439 -27.89067 -26.60894 -26.22396 -24.36526 -22.69656 -21.46351 -20.15700 -19.39752 -18.79204 -17.65871 -17.04851 -16.29443 -16.09265 -15.19124 -14.92071 -14.50458 -13.97806 -13.71106 -13.67155 -13.40381 -13.21365 -12.73426 -12.69401 -12.46769 -12.37815 -12.31354 -12.24161 -11.90576 -11.64941 -11.34211 -10.84087 -10.76615 -10.53085 -10.15177 -9.96160 -9.58004 -9.50752 -8.74033 -8.50551 -8.39363 -8.26700 -6.98364 -6.03875 -3.38039 1.76085 2.31124 3.02621 3.31439 3.35165 3.50003 3.55663 3.71551 4.51271 4.70569 4.80550 4.81001 4.95881 5.08013 5.18230 5.24359 5.32946 5.39770 5.46867 5.70259 5.73313 5.76393 5.84106 5.89034 6.03265 6.12866 6.22678 6.24512 6.31879 6.43976 6.56936 6.63171 6.68774 6.75464 6.79739 6.81851 7.28871 7.87985 7.94688 8.29799 8.57044 8.91109 9.67067 10.03100 11.11613 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032957 B = 0.004248 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.388163 B = 6589.914008 C = 7111.367229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.111 4.111 3 C -0.031 4.031 4 N -0.553 5.553 5 H 0.416 0.584 6 C 0.033 3.967 7 C -0.219 4.219 8 C 0.598 3.402 9 O -0.547 6.547 10 N -0.613 5.613 11 C 0.099 3.901 12 C -0.151 4.151 13 C 0.172 3.828 14 H 0.087 0.913 15 N -0.594 5.594 16 C 0.109 3.891 17 C -0.274 4.274 18 H 0.084 0.916 19 C 0.036 3.964 20 N -0.894 5.894 21 Si 0.878 3.122 22 H -0.286 1.286 23 H -0.302 1.302 24 H -0.270 1.270 25 C 0.084 3.916 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.022 0.978 36 H 0.040 0.960 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.075 0.925 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 23.147 -4.169 23.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.158 4.158 4 N -0.147 5.147 5 H 0.252 0.748 6 C -0.103 4.103 7 C -0.229 4.229 8 C 0.388 3.612 9 O -0.426 6.426 10 N -0.347 5.347 11 C -0.025 4.025 12 C -0.191 4.191 13 C 0.062 3.938 14 H 0.106 0.894 15 N -0.316 5.316 16 C -0.036 4.036 17 C -0.402 4.402 18 H 0.102 0.898 19 C -0.165 4.165 20 N -0.534 5.534 21 Si 0.709 3.291 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.195 1.195 25 C -0.040 4.040 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.200 0.800 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.229 22.922 -4.128 23.323 hybrid contribution -0.297 0.060 -0.829 0.883 sum 0.932 22.982 -4.957 23.529 Atomic orbital electron populations 1.20190 0.89402 1.02549 1.01887 1.20568 0.95639 0.90369 1.05134 1.21546 0.82583 0.99066 1.12610 1.41539 1.08163 1.06799 1.58236 0.74810 1.22748 0.99422 0.83653 1.04443 1.20403 0.92682 0.92768 1.17073 1.17072 0.84551 0.83379 0.76156 1.90735 1.16799 1.83491 1.51565 1.48311 1.06131 1.07064 1.73187 1.22270 0.80974 0.98930 1.00302 1.23169 0.99720 0.93361 1.02831 1.21590 0.89807 0.84342 0.98035 0.89441 1.44043 1.84096 1.01439 1.02030 1.21346 0.98655 0.98578 0.84987 1.18806 1.35696 0.88343 0.97373 0.89833 1.25303 0.97971 0.95463 0.97739 1.69908 1.40946 0.97893 1.44700 0.86991 0.83844 0.77334 0.80948 1.21428 1.23024 1.19496 1.23085 1.01475 0.77872 1.01611 0.91940 0.92520 0.90218 0.81595 0.80002 0.91854 0.91528 0.90172 0.90609 0.95970 0.94230 0.94518 0.92605 0.90618 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.98 36.01 0.36 -0.65 16 2 C -0.11 -1.40 6.35 -102.54 -0.65 -2.06 16 3 C -0.03 -0.28 11.82 -16.83 -0.20 -0.48 16 4 N -0.55 -4.23 5.90 -12.85 -0.08 -4.31 16 5 H 0.42 1.58 8.96 -40.82 -0.37 1.21 16 6 C 0.03 0.33 10.42 -16.84 -0.18 0.16 16 7 C -0.22 -3.09 6.26 -103.35 -0.65 -3.74 16 8 C 0.60 10.52 7.84 -12.59 -0.10 10.42 16 9 O -0.55 -11.53 15.57 5.26 0.08 -11.44 16 10 N -0.61 -10.03 3.33 -171.85 -0.57 -10.61 16 11 C 0.10 1.22 5.00 -3.06 -0.02 1.20 16 12 C -0.15 -2.18 6.51 -24.89 -0.16 -2.35 16 13 C 0.17 3.26 3.54 -65.79 -0.23 3.03 16 14 H 0.09 1.71 7.96 -51.93 -0.41 1.30 16 15 N -0.59 -13.71 2.62 -171.04 -0.45 -14.16 16 16 C 0.11 2.32 8.37 59.85 0.50 2.83 16 17 C -0.27 -7.51 9.89 -15.06 -0.15 -7.66 16 18 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 19 C 0.04 1.04 5.29 -17.43 -0.09 0.94 16 20 N -0.89 -27.02 13.97 55.49 0.78 -26.25 16 21 Si 0.88 22.40 25.10 -169.99 -4.27 18.13 16 22 H -0.29 -7.04 6.61 56.52 0.37 -6.67 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.08 1.59 6.46 -2.54 -0.02 1.58 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.17 6.84 -51.93 -0.36 0.81 16 29 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.18 1.42 4.42 -52.49 -0.23 1.18 16 31 H 0.06 0.65 7.05 -51.93 -0.37 0.28 16 32 H 0.07 0.69 6.85 -51.93 -0.36 0.33 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.11 7.07 -51.93 -0.37 0.74 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.93 2.54 -51.93 -0.13 0.80 16 37 H 0.04 0.69 6.34 -51.93 -0.33 0.36 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.08 1.59 8.04 -51.93 -0.42 1.17 16 40 H 0.06 1.25 6.34 -51.93 -0.33 0.92 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -34.55 314.43 -6.71 -41.26 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.36 Total: -0.59 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.58 Total: 3.22 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.32 Total: -55.32 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.27 Total: 18.13 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.55 -6.71 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980389799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.178 kcal (2) G-P(sol) polarization free energy of solvation -34.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds