Wall clock time and date at job start Mon Mar 30 2020 02:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34481 * 126.83559 * 2 1 4 4 N 1.36447 * 108.85661 * 179.97438 * 3 2 1 5 5 H 0.97002 * 124.84835 * 180.02562 * 4 3 2 6 6 C 1.34654 * 110.30088 * 0.02562 * 4 3 2 7 7 C 1.36776 * 108.39323 * 359.74740 * 6 4 3 8 8 C 1.47267 * 126.93990 * 180.24403 * 7 6 4 9 9 O 1.21623 * 119.99495 * 180.15549 * 8 7 6 10 10 N 1.34772 * 120.00017 * 0.15554 * 8 7 6 11 11 C 1.47022 * 125.65008 * 359.69458 * 10 8 7 12 12 C 1.54331 * 107.26596 * 178.84900 * 11 10 8 13 13 C 1.55153 * 103.02049 * 338.13319 * 12 11 10 14 14 H 1.08997 * 111.00919 * 277.23325 * 13 12 11 15 15 N 1.46502 * 111.00283 * 153.38228 * 13 12 11 16 16 C 1.46503 * 120.00027 * 306.35238 * 15 13 12 17 17 C 1.36936 * 120.00089 * 126.35337 * 15 13 12 18 18 H 1.08002 * 120.00096 * 328.89264 * 17 15 13 19 19 C 1.38817 * 120.00391 * 148.89115 * 17 15 13 20 20 N 1.31612 * 120.00169 * 153.35445 * 19 17 15 21 21 Si 1.86798 * 119.99594 * 333.35918 * 19 17 15 22 22 H 1.48504 * 109.47097 * 94.68650 * 21 19 17 23 23 H 1.48496 * 109.46988 * 214.68152 * 21 19 17 24 24 H 1.48498 * 109.47551 * 334.68592 * 21 19 17 25 25 C 1.47421 * 125.64777 * 179.97438 * 10 8 7 26 26 H 1.08993 * 109.46787 * 90.02093 * 1 2 3 27 27 H 1.08998 * 109.46642 * 330.02363 * 1 2 3 28 28 H 1.08999 * 109.46692 * 210.02279 * 1 2 3 29 29 H 1.07999 * 125.57117 * 359.94745 * 3 2 1 30 30 H 1.07994 * 125.80211 * 179.97438 * 6 4 3 31 31 H 1.09005 * 109.87843 * 298.38994 * 11 10 8 32 32 H 1.08997 * 109.88477 * 59.55296 * 11 10 8 33 33 H 1.09002 * 110.84982 * 219.66986 * 12 11 10 34 34 H 1.09002 * 110.67285 * 96.52352 * 12 11 10 35 35 H 1.08999 * 109.46743 * 95.59867 * 16 15 13 36 36 H 1.09004 * 109.46901 * 215.59351 * 16 15 13 37 37 H 1.09000 * 109.47222 * 335.59518 * 16 15 13 38 38 H 0.97001 * 119.99807 * 179.97438 * 20 19 17 39 39 H 1.09002 * 110.37177 * 322.93307 * 25 10 8 40 40 H 1.09000 * 110.36568 * 85.14758 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6112 0.6552 0.0006 5 1 4.3841 1.2413 0.0011 6 6 3.6657 -0.6903 0.0004 7 6 2.3864 -1.1741 0.0054 8 6 1.9749 -2.5881 0.0121 9 8 0.7937 -2.8776 0.0132 10 7 2.9073 -3.5612 0.0169 11 6 4.3628 -3.3534 0.0098 12 6 5.0246 -4.7471 0.0488 13 6 3.9077 -5.6481 0.6385 14 1 3.8890 -5.5859 1.7265 15 7 4.0648 -7.0361 0.1967 16 6 4.1685 -7.3428 -1.2321 17 6 4.1147 -8.0468 1.1193 18 1 4.5324 -7.8641 2.0984 19 6 3.6284 -9.3062 0.7963 20 7 4.1090 -10.3721 1.4005 21 14 2.2920 -9.4881 -0.4960 22 1 2.9137 -9.7719 -1.8145 23 1 1.3911 -10.6078 -0.1223 24 1 1.5088 -8.2291 -0.5789 25 6 2.6368 -5.0104 0.0243 26 1 -0.3633 -0.0004 -1.0276 27 1 -0.3632 0.8902 0.5135 28 1 -0.3633 -0.8898 0.5142 29 1 1.9869 2.1058 -0.0008 30 1 4.5665 -1.2860 0.0004 31 1 4.6575 -2.8262 -0.8976 32 1 4.6596 -2.7794 0.8876 33 1 5.8999 -4.7429 0.6985 34 1 5.2935 -5.0736 -0.9558 35 1 5.2192 -7.4181 -1.5121 36 1 3.6689 -8.2896 -1.4376 37 1 3.6945 -6.5491 -1.8094 38 1 3.7689 -11.2521 1.1750 39 1 1.7657 -5.2306 0.6414 40 1 2.4820 -5.3725 -0.9921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980389799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:54 Heat of formation + Delta-G solvation = 29.976637 kcal Electronic energy + Delta-G solvation = -21758.570685 eV Core-core repulsion = 18574.544979 eV Total energy + Delta-G solvation = -3184.025706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.15853 -40.61292 -38.77282 -36.66553 -33.86110 -33.31848 -32.00389 -30.92034 -29.19578 -28.09434 -27.44154 -25.82601 -24.26286 -22.51051 -21.19839 -20.85891 -19.69799 -19.02258 -18.56084 -17.79848 -17.47778 -16.84976 -16.13480 -15.73920 -15.30479 -14.98269 -14.73460 -14.67379 -14.53822 -14.34926 -14.14743 -13.90085 -13.67291 -13.58062 -13.43992 -13.25459 -13.15056 -12.55696 -12.38067 -12.31211 -12.16468 -11.98739 -11.58192 -11.44772 -10.90930 -10.60463 -9.79041 -9.44507 -9.15596 -8.89399 -8.24339 -5.53429 0.79920 1.26228 1.40929 1.50092 1.51609 1.98323 2.38432 2.50115 2.55538 3.00456 3.30279 3.71264 3.83525 3.98097 4.14413 4.17356 4.25460 4.27546 4.42420 4.50488 4.52617 4.62718 4.70878 4.73048 4.88053 4.90126 4.93606 4.94597 5.00114 5.12052 5.26780 5.29353 5.34041 5.40245 5.84971 5.86979 5.99120 6.12554 6.64914 6.74548 6.90861 7.29566 7.59200 7.98104 8.95594 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032957 B = 0.004248 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.388163 B = 6589.914008 C = 7111.367229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.155 4.155 3 C -0.004 4.004 4 N -0.531 5.531 5 H 0.440 0.560 6 C 0.060 3.940 7 C -0.266 4.266 8 C 0.588 3.412 9 O -0.601 6.601 10 N -0.614 5.614 11 C 0.099 3.901 12 C -0.136 4.136 13 C 0.165 3.835 14 H 0.073 0.927 15 N -0.607 5.607 16 C 0.108 3.892 17 C -0.260 4.260 18 H 0.055 0.945 19 C -0.016 4.016 20 N -0.940 5.940 21 Si 0.936 3.064 22 H -0.269 1.269 23 H -0.311 1.311 24 H -0.274 1.274 25 C 0.092 3.908 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.205 0.795 30 H 0.211 0.789 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.037 0.963 36 H 0.019 0.981 37 H 0.063 0.937 38 H 0.264 0.736 39 H 0.040 0.960 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 26.999 -5.576 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.161 4.161 3 C -0.133 4.133 4 N -0.127 5.127 5 H 0.281 0.719 6 C -0.078 4.078 7 C -0.277 4.277 8 C 0.382 3.618 9 O -0.484 6.484 10 N -0.347 5.347 11 C -0.022 4.022 12 C -0.175 4.175 13 C 0.056 3.944 14 H 0.092 0.908 15 N -0.330 5.330 16 C -0.036 4.036 17 C -0.390 4.390 18 H 0.073 0.927 19 C -0.213 4.213 20 N -0.584 5.584 21 Si 0.767 3.233 22 H -0.196 1.196 23 H -0.240 1.240 24 H -0.200 1.200 25 C -0.033 4.033 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.221 0.779 30 H 0.227 0.773 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.397 26.856 -5.561 27.635 hybrid contribution -0.898 -0.987 -0.329 1.375 sum 2.499 25.869 -5.890 26.648 Atomic orbital electron populations 1.20093 0.90188 1.01907 1.01417 1.20799 0.95924 0.91384 1.07976 1.21978 0.82373 0.99669 1.09246 1.41585 1.08763 1.06339 1.56001 0.71941 1.22955 0.98546 0.84705 1.01593 1.20288 0.95123 0.90938 1.21325 1.17752 0.83961 0.84994 0.75129 1.90695 1.19104 1.84456 1.54169 1.48336 1.08002 1.05422 1.72941 1.22557 0.77972 0.98234 1.03465 1.23057 0.98485 0.93004 1.02983 1.21680 0.91934 0.83097 0.97648 0.90828 1.44115 1.84551 1.02124 1.02178 1.21392 0.99617 0.98461 0.84135 1.18776 1.33781 0.89385 0.97058 0.92682 1.25822 0.99811 0.95395 1.00281 1.70003 1.42713 0.98344 1.47348 0.86029 0.81117 0.76475 0.79672 1.19604 1.23980 1.19958 1.22710 1.00079 0.80315 1.00228 0.92409 0.89887 0.94029 0.77872 0.77281 0.88302 0.88567 0.88338 0.90074 0.94440 0.96300 0.91866 0.92707 0.94128 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.98 71.24 0.71 -1.21 16 2 C -0.15 -3.66 6.35 -18.51 -0.12 -3.77 16 3 C 0.00 -0.06 11.82 83.11 0.98 0.92 16 4 N -0.53 -5.22 5.90 -194.56 -1.15 -6.37 16 5 H 0.44 0.51 8.96 -92.71 -0.83 -0.32 16 6 C 0.06 0.93 10.42 83.92 0.87 1.81 16 7 C -0.27 -7.04 6.26 -19.04 -0.12 -7.16 16 8 C 0.59 20.80 7.84 86.62 0.68 21.48 16 9 O -0.60 -26.84 15.57 -4.10 -0.06 -26.90 16 10 N -0.61 -19.46 3.33 -815.86 -2.71 -22.18 16 11 C 0.10 2.05 5.00 86.73 0.43 2.49 16 12 C -0.14 -3.49 6.51 31.78 0.21 -3.28 16 13 C 0.16 6.16 3.54 46.38 0.16 6.32 16 14 H 0.07 2.92 7.96 -2.39 -0.02 2.90 16 15 N -0.61 -27.85 2.62 -695.03 -1.82 -29.67 16 16 C 0.11 4.44 8.37 127.77 1.07 5.51 16 17 C -0.26 -14.58 9.89 84.03 0.83 -13.75 16 18 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 19 C -0.02 -0.94 5.29 84.86 0.45 -0.49 16 20 N -0.94 -58.49 13.97 21.65 0.30 -58.19 16 21 Si 0.94 47.44 25.10 68.60 1.72 49.17 16 22 H -0.27 -12.74 6.61 99.48 0.66 -12.08 16 23 H -0.31 -16.03 7.11 99.48 0.71 -15.33 16 24 H -0.27 -13.90 7.11 99.48 0.71 -13.19 16 25 C 0.09 3.54 6.46 86.85 0.56 4.10 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.04 1.31 6.84 -2.39 -0.02 1.29 16 29 H 0.20 1.22 8.06 -2.91 -0.02 1.19 16 30 H 0.21 1.94 4.42 -2.91 -0.01 1.93 16 31 H 0.10 1.44 7.05 -2.38 -0.02 1.43 16 32 H 0.10 1.48 6.85 -2.39 -0.02 1.47 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.04 7.07 -2.39 -0.02 2.03 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.02 0.87 2.54 -2.38 -0.01 0.86 16 37 H 0.06 2.25 6.34 -2.39 -0.02 2.23 16 38 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.04 1.80 8.04 -2.39 -0.02 1.79 16 40 H 0.05 2.18 6.34 -2.39 -0.02 2.16 16 Total: -1.00 -81.46 314.43 3.19 -78.26 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: 0.19 Total: 2.91 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.72 Total: 12.97 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -5.38 Total: -116.41 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.06 Total: -26.90 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.72 Total: 49.17 kcal Total: -81.46 3.19 -78.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980389799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.240 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds