Wall clock time and date at job start Mon Mar 30 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34660 * 125.79963 * 2 1 4 4 H 0.96998 * 124.85502 * 359.97438 * 3 2 1 5 5 C 1.36448 * 110.29566 * 180.02562 * 3 2 1 6 6 C 1.34495 * 108.85465 * 359.74833 * 5 3 2 7 7 C 1.36770 * 125.80037 * 180.02562 * 2 1 3 8 8 C 1.47262 * 126.94316 * 359.94367 * 7 2 1 9 9 O 1.21628 * 119.99850 * 15.73289 * 8 7 2 10 10 N 1.34769 * 120.00133 * 195.73848 * 8 7 2 11 11 C 1.48212 * 119.97325 * 176.06210 * 10 8 7 12 12 C 1.47142 * 110.34307 * 102.46613 * 11 10 8 13 13 C 1.53792 * 111.84024 * 58.29866 * 12 11 10 14 14 N 1.43464 * 107.96085 * 281.66715 * 13 12 11 15 15 C 1.36930 * 118.94281 * 273.60898 * 14 13 12 16 16 H 1.08001 * 120.00052 * 22.09402 * 15 14 13 17 17 C 1.38815 * 120.00436 * 202.09670 * 15 14 13 18 18 N 1.31625 * 119.99515 * 34.06872 * 17 15 14 19 19 Si 1.86789 * 120.00227 * 214.06529 * 17 15 14 20 20 H 1.48501 * 109.47245 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47165 * 60.00359 * 19 17 15 22 22 H 1.48500 * 109.47789 * 300.00095 * 19 17 15 23 23 C 1.48858 * 122.11807 * 93.89121 * 14 13 12 24 24 C 1.43622 * 119.97157 * 356.04120 * 10 8 7 25 25 H 1.08995 * 109.47454 * 269.98453 * 1 2 3 26 26 H 1.09002 * 109.46825 * 29.98005 * 1 2 3 27 27 H 1.09000 * 109.46971 * 149.97807 * 1 2 3 28 28 H 1.07999 * 125.57552 * 180.02562 * 5 3 2 29 29 H 1.08004 * 126.82923 * 180.24668 * 6 5 3 30 30 H 1.09001 * 109.32625 * 342.20371 * 11 10 8 31 31 H 1.08998 * 109.18781 * 222.64381 * 11 10 8 32 32 H 1.09003 * 109.00376 * 297.69374 * 12 11 10 33 33 H 1.08995 * 108.94891 * 178.86781 * 12 11 10 34 34 H 1.09003 * 109.76642 * 162.04769 * 13 12 11 35 35 H 1.09006 * 109.80771 * 41.31084 * 13 12 11 36 36 H 0.97000 * 119.99881 * 5.89124 * 18 17 15 37 37 H 1.09002 * 109.48319 * 80.34377 * 23 14 13 38 38 H 1.09002 * 109.48144 * 200.38022 * 23 14 13 39 39 H 1.09003 * 108.87539 * 31.46375 * 24 10 8 40 40 H 1.09001 * 108.87835 * 150.00944 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6096 0.7275 -0.0006 6 6 3.6882 -0.6152 0.0046 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5156 0.0000 9 8 0.7214 -2.7956 -0.2846 10 7 2.7434 -3.4924 0.3160 11 6 2.2824 -4.8984 0.4017 12 6 2.6803 -5.6415 -0.8044 13 6 4.2041 -5.6219 -1.0118 14 7 4.5584 -4.3478 -1.5681 15 6 4.5052 -4.1798 -2.9261 16 1 3.8861 -4.8296 -3.5268 17 6 5.2471 -3.1743 -3.5307 18 7 6.4228 -2.8397 -3.0425 19 14 4.5769 -2.2961 -5.0369 20 1 5.5531 -1.2719 -5.4880 21 1 3.2912 -1.6367 -4.6943 22 1 4.3534 -3.2809 -6.1256 23 6 4.9880 -3.2045 -0.7172 24 6 4.1199 -3.1700 0.5691 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4498 1.4060 -0.0003 29 1 4.5890 -1.2110 0.0093 30 1 1.1966 -4.9170 0.4949 31 1 2.7278 -5.3686 1.2783 32 1 2.1980 -5.1929 -1.6729 33 1 2.3484 -6.6752 -0.7088 34 1 4.4928 -6.4173 -1.6989 35 1 4.7088 -5.7598 -0.0556 36 1 6.8090 -3.3513 -2.3144 37 1 6.0374 -3.3257 -0.4482 38 1 4.8590 -2.2728 -1.2679 39 1 4.1741 -2.1722 1.0046 40 1 4.5249 -3.8880 1.2822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980932737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:22 Heat of formation + Delta-G solvation = 60.645015 kcal Electronic energy + Delta-G solvation = -23161.952619 eV Core-core repulsion = 19979.256794 eV Total energy + Delta-G solvation = -3182.695825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06773 -39.11612 -36.85195 -34.27901 -33.16144 -31.29475 -30.97218 -30.14708 -27.78742 -26.06367 -25.16175 -23.55376 -22.88024 -20.84656 -20.28355 -19.66467 -17.93690 -17.31935 -17.04853 -15.75762 -15.71481 -14.86744 -14.51471 -14.33804 -13.91041 -13.52338 -13.37495 -13.17040 -12.98113 -12.68546 -12.56207 -12.39298 -12.23816 -12.06873 -11.60490 -11.28748 -10.98503 -10.67791 -10.60244 -10.22040 -10.20522 -10.15569 -9.92747 -9.39216 -9.16506 -8.44572 -8.13821 -8.02589 -7.75912 -6.82478 -6.04497 -3.05545 2.13846 2.77458 3.35980 3.55717 3.63323 3.77578 3.78919 4.05431 4.69725 5.06056 5.17109 5.23358 5.37047 5.42640 5.51904 5.64132 5.67707 5.71443 5.82282 5.86855 5.97247 6.08038 6.12426 6.15195 6.23903 6.31086 6.44118 6.50722 6.60037 6.80916 6.84610 7.05928 7.07051 7.09886 7.22939 7.37548 7.69140 8.13252 8.18137 8.64310 8.92634 9.22874 9.94881 10.34071 11.24098 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.009067 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.704681 B = 3087.518558 C = 4017.065793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.091 3.909 3 N -0.555 5.555 4 H 0.411 0.589 5 C -0.026 4.026 6 C -0.173 4.173 7 C -0.221 4.221 8 C 0.597 3.403 9 O -0.566 6.566 10 N -0.579 5.579 11 C 0.132 3.868 12 C -0.168 4.168 13 C 0.165 3.835 14 N -0.590 5.590 15 C -0.354 4.354 16 H 0.054 0.946 17 C -0.014 4.014 18 N -0.905 5.905 19 Si 1.043 2.957 20 H -0.287 1.287 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.129 3.871 24 C 0.068 3.932 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.167 0.833 29 H 0.170 0.830 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.030 0.970 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.298 5.789 10.331 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 N -0.151 5.151 4 H 0.246 0.754 5 C -0.153 4.153 6 C -0.197 4.197 7 C -0.231 4.231 8 C 0.388 3.612 9 O -0.448 6.448 10 N -0.309 5.309 11 C 0.010 3.990 12 C -0.209 4.209 13 C 0.036 3.964 14 N -0.313 5.313 15 C -0.483 4.483 16 H 0.072 0.928 17 C -0.217 4.217 18 N -0.545 5.545 19 Si 0.873 3.127 20 H -0.213 1.213 21 H -0.222 1.222 22 H -0.221 1.221 23 C 0.003 3.997 24 C -0.058 4.058 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.048 0.952 38 H 0.101 0.899 39 H 0.113 0.887 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.580 6.965 9.117 13.226 hybrid contribution -0.210 -0.873 0.829 1.222 sum -6.790 6.092 9.946 13.496 Atomic orbital electron populations 1.20545 0.87469 1.04326 1.02766 1.20212 0.93420 0.85763 1.03277 1.41536 1.06329 1.07991 1.59266 0.75358 1.21798 0.85392 0.96686 1.11379 1.23028 0.96993 0.93603 1.06031 1.20134 0.93311 0.92129 1.17515 1.17290 0.84365 0.84115 0.75416 1.90632 1.19554 1.83936 1.50642 1.47049 1.08574 1.06683 1.68557 1.20517 0.99988 0.80684 0.97783 1.21839 1.01685 0.98298 0.99118 1.20263 0.91332 0.88728 0.96038 1.43648 1.78800 1.05701 1.03111 1.19855 1.25278 1.20209 0.82974 0.92803 1.25488 0.93757 0.99548 1.02871 1.70825 1.12282 1.44519 1.26836 0.83856 0.75851 0.76942 0.76055 1.21265 1.22168 1.22117 1.22338 0.94065 0.93119 0.90177 1.22576 0.82236 1.01950 0.99016 0.91134 0.92144 0.87822 0.81526 0.81345 0.90512 0.92395 0.91123 0.92851 0.93679 0.95143 0.92309 0.95246 0.89935 0.88719 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 10.05 36.01 0.36 -0.88 16 2 C 0.09 1.43 7.17 -81.88 -0.59 0.84 16 3 N -0.56 -7.06 5.90 -9.10 -0.05 -7.11 16 4 H 0.41 3.56 8.96 -40.82 -0.37 3.19 16 5 C -0.03 -0.36 11.89 -16.82 -0.20 -0.56 16 6 C -0.17 -3.01 7.98 -37.50 -0.30 -3.31 16 7 C -0.22 -4.18 6.01 -103.35 -0.62 -4.80 16 8 C 0.60 12.60 7.63 -12.60 -0.10 12.50 16 9 O -0.57 -12.92 14.34 5.25 0.08 -12.84 16 10 N -0.58 -11.38 2.46 -177.76 -0.44 -11.82 16 11 C 0.13 2.37 5.68 -5.91 -0.03 2.34 16 12 C -0.17 -3.27 5.64 -29.13 -0.16 -3.43 16 13 C 0.16 3.49 5.63 -5.24 -0.03 3.46 16 14 N -0.59 -14.62 2.43 -171.77 -0.42 -15.04 16 15 C -0.35 -10.05 9.08 -15.06 -0.14 -10.19 16 16 H 0.05 1.59 8.02 -52.49 -0.42 1.17 16 17 C -0.01 -0.40 4.39 -17.43 -0.08 -0.48 16 18 N -0.91 -26.56 12.57 55.49 0.70 -25.86 16 19 Si 1.04 26.29 30.03 -169.99 -5.10 21.18 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 C 0.13 2.89 4.35 -1.56 -0.01 2.89 16 24 C 0.07 1.24 4.72 -4.39 -0.02 1.22 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.10 1.67 6.29 -51.93 -0.33 1.34 16 28 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.17 3.02 3.57 -52.48 -0.19 2.83 16 30 H 0.08 1.39 7.17 -51.93 -0.37 1.02 16 31 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.07 1.65 7.91 -51.93 -0.41 1.24 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.04 0.99 8.02 -51.93 -0.42 0.57 16 35 H 0.03 0.59 7.59 -51.93 -0.39 0.19 16 36 H 0.27 7.83 6.91 -40.82 -0.28 7.54 16 37 H 0.03 0.67 7.37 -51.93 -0.38 0.29 16 38 H 0.08 2.06 4.82 -51.93 -0.25 1.81 16 39 H 0.10 1.59 4.21 -51.93 -0.22 1.37 16 40 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -34.05 308.35 -7.84 -41.89 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.33 Total: 5.35 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.91 Total: -0.40 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.21 Total: -59.83 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.10 Total: 21.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.05 -7.84 -41.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980932737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.533 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds