Wall clock time and date at job start Mon Mar 30 2020 01:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34660 * 125.79963 * 2 1 4 4 H 0.96998 * 124.85502 * 359.97438 * 3 2 1 5 5 C 1.36448 * 110.29566 * 180.02562 * 3 2 1 6 6 C 1.34495 * 108.85465 * 359.74833 * 5 3 2 7 7 C 1.36770 * 125.80037 * 180.02562 * 2 1 3 8 8 C 1.47262 * 126.94316 * 359.94367 * 7 2 1 9 9 O 1.21628 * 119.99850 * 15.73289 * 8 7 2 10 10 N 1.34769 * 120.00133 * 195.73848 * 8 7 2 11 11 C 1.48212 * 119.97325 * 176.06210 * 10 8 7 12 12 C 1.47142 * 110.34307 * 102.46613 * 11 10 8 13 13 C 1.53792 * 111.84024 * 58.29866 * 12 11 10 14 14 N 1.43464 * 107.96085 * 281.66715 * 13 12 11 15 15 C 1.36930 * 118.94281 * 273.60898 * 14 13 12 16 16 H 1.08001 * 120.00052 * 22.09402 * 15 14 13 17 17 C 1.38815 * 120.00436 * 202.09670 * 15 14 13 18 18 N 1.31625 * 119.99515 * 34.06872 * 17 15 14 19 19 Si 1.86789 * 120.00227 * 214.06529 * 17 15 14 20 20 H 1.48501 * 109.47245 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.47165 * 60.00359 * 19 17 15 22 22 H 1.48500 * 109.47789 * 300.00095 * 19 17 15 23 23 C 1.48858 * 122.11807 * 93.89121 * 14 13 12 24 24 C 1.43622 * 119.97157 * 356.04120 * 10 8 7 25 25 H 1.08995 * 109.47454 * 269.98453 * 1 2 3 26 26 H 1.09002 * 109.46825 * 29.98005 * 1 2 3 27 27 H 1.09000 * 109.46971 * 149.97807 * 1 2 3 28 28 H 1.07999 * 125.57552 * 180.02562 * 5 3 2 29 29 H 1.08004 * 126.82923 * 180.24668 * 6 5 3 30 30 H 1.09001 * 109.32625 * 342.20371 * 11 10 8 31 31 H 1.08998 * 109.18781 * 222.64381 * 11 10 8 32 32 H 1.09003 * 109.00376 * 297.69374 * 12 11 10 33 33 H 1.08995 * 108.94891 * 178.86781 * 12 11 10 34 34 H 1.09003 * 109.76642 * 162.04769 * 13 12 11 35 35 H 1.09006 * 109.80771 * 41.31084 * 13 12 11 36 36 H 0.97000 * 119.99881 * 5.89124 * 18 17 15 37 37 H 1.09002 * 109.48319 * 80.34377 * 23 14 13 38 38 H 1.09002 * 109.48144 * 200.38022 * 23 14 13 39 39 H 1.09003 * 108.87539 * 31.46375 * 24 10 8 40 40 H 1.09001 * 108.87835 * 150.00944 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 -0.0004 5 6 3.6096 0.7275 -0.0006 6 6 3.6882 -0.6152 0.0046 7 6 2.3071 -1.1093 -0.0005 8 6 1.8702 -2.5156 0.0000 9 8 0.7214 -2.7956 -0.2846 10 7 2.7434 -3.4924 0.3160 11 6 2.2824 -4.8984 0.4017 12 6 2.6803 -5.6415 -0.8044 13 6 4.2041 -5.6219 -1.0118 14 7 4.5584 -4.3478 -1.5681 15 6 4.5052 -4.1798 -2.9261 16 1 3.8861 -4.8296 -3.5268 17 6 5.2471 -3.1743 -3.5307 18 7 6.4228 -2.8397 -3.0425 19 14 4.5769 -2.2961 -5.0369 20 1 5.5531 -1.2719 -5.4880 21 1 3.2912 -1.6367 -4.6943 22 1 4.3534 -3.2809 -6.1256 23 6 4.9880 -3.2045 -0.7172 24 6 4.1199 -3.1700 0.5691 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4498 1.4060 -0.0003 29 1 4.5890 -1.2110 0.0093 30 1 1.1966 -4.9170 0.4949 31 1 2.7278 -5.3686 1.2783 32 1 2.1980 -5.1929 -1.6729 33 1 2.3484 -6.6752 -0.7088 34 1 4.4928 -6.4173 -1.6989 35 1 4.7088 -5.7598 -0.0556 36 1 6.8090 -3.3513 -2.3144 37 1 6.0374 -3.3257 -0.4482 38 1 4.8590 -2.2728 -1.2679 39 1 4.1741 -2.1722 1.0046 40 1 4.5249 -3.8880 1.2822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980932737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:22 Heat of formation + Delta-G solvation = 38.369361 kcal Electronic energy + Delta-G solvation = -23162.918564 eV Core-core repulsion = 19979.256794 eV Total energy + Delta-G solvation = -3183.661770 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30485 -40.60845 -38.56876 -36.07549 -34.76281 -32.85644 -32.42874 -31.51950 -29.46881 -27.46656 -26.70649 -25.46664 -24.38638 -22.15985 -21.73749 -21.39015 -19.52719 -18.99855 -18.42251 -17.33606 -17.18980 -16.37137 -16.23675 -15.78264 -15.56109 -15.29213 -14.92377 -14.64404 -14.59785 -14.19053 -13.85977 -13.73965 -13.58670 -13.40168 -13.28829 -12.86284 -12.57544 -12.50273 -12.15539 -12.02299 -11.99736 -11.89397 -11.77687 -11.36024 -10.71440 -10.29451 -9.72282 -9.49967 -9.03577 -8.85232 -8.24967 -5.23851 0.81694 1.50718 1.55867 1.57840 1.76827 2.15844 2.47798 2.58186 2.63669 3.14414 3.61735 3.87969 3.96472 4.13299 4.17160 4.24356 4.33282 4.36454 4.41867 4.50696 4.64846 4.69847 4.72147 4.75150 4.85204 4.98349 5.00749 5.06995 5.10864 5.18020 5.24008 5.32183 5.45794 5.79830 5.83893 5.90115 6.02894 6.43737 6.63669 6.74988 7.15484 7.39103 7.88091 8.24933 8.99730 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.009067 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.704681 B = 3087.518558 C = 4017.065793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.095 3.905 3 N -0.534 5.534 4 H 0.434 0.566 5 C -0.005 4.005 6 C -0.207 4.207 7 C -0.268 4.268 8 C 0.583 3.417 9 O -0.597 6.597 10 N -0.584 5.584 11 C 0.128 3.872 12 C -0.153 4.153 13 C 0.160 3.840 14 N -0.605 5.605 15 C -0.361 4.361 16 H 0.031 0.969 17 C -0.054 4.054 18 N -0.919 5.919 19 Si 1.085 2.915 20 H -0.282 1.282 21 H -0.300 1.300 22 H -0.281 1.281 23 C 0.137 3.863 24 C 0.079 3.921 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.205 0.795 29 H 0.157 0.843 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.022 0.978 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.257 0.743 37 H 0.023 0.977 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.595 7.248 11.654 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 N -0.131 5.131 4 H 0.274 0.726 5 C -0.132 4.132 6 C -0.231 4.231 7 C -0.278 4.278 8 C 0.376 3.624 9 O -0.482 6.482 10 N -0.313 5.313 11 C 0.007 3.993 12 C -0.193 4.193 13 C 0.033 3.967 14 N -0.328 5.328 15 C -0.491 4.491 16 H 0.049 0.951 17 C -0.253 4.253 18 N -0.560 5.560 19 Si 0.912 3.088 20 H -0.207 1.207 21 H -0.228 1.228 22 H -0.208 1.208 23 C 0.011 3.989 24 C -0.046 4.046 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.221 0.779 29 H 0.174 0.826 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.041 0.959 33 H 0.104 0.896 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.874 8.426 10.463 15.090 hybrid contribution -0.137 -1.334 0.430 1.409 sum -7.012 7.091 10.893 14.768 Atomic orbital electron populations 1.20542 0.85950 1.04305 1.03935 1.20498 0.94488 0.85813 1.01606 1.41502 1.05635 1.08588 1.57399 0.72604 1.22272 0.86637 0.96046 1.08275 1.22974 0.96052 0.95216 1.08812 1.20265 0.94861 0.91892 1.20785 1.17822 0.84233 0.85458 0.74930 1.90596 1.20755 1.84648 1.52161 1.47215 1.08801 1.07158 1.68106 1.20657 1.00184 0.80122 0.98359 1.21647 0.99711 1.00110 0.97878 1.20420 0.92598 0.86931 0.96765 1.43853 1.79013 1.07654 1.02317 1.19928 1.24180 1.20082 0.84900 0.95081 1.26412 0.93726 1.00247 1.04938 1.70907 1.12896 1.44877 1.27343 0.83240 0.74910 0.76395 0.74225 1.20726 1.22817 1.20762 1.22239 0.94437 0.91007 0.91205 1.22465 0.81061 1.04017 0.97078 0.89311 0.88890 0.90999 0.77864 0.82585 0.90878 0.88578 0.95918 0.89629 0.94968 0.92344 0.93331 0.95947 0.92790 0.86894 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 10.05 71.24 0.72 -1.53 16 2 C 0.10 2.85 7.17 41.78 0.30 3.15 16 3 N -0.53 -11.90 5.90 -182.71 -1.08 -12.98 16 4 H 0.43 5.71 8.96 -92.71 -0.83 4.88 16 5 C 0.00 -0.11 11.89 83.12 0.99 0.87 16 6 C -0.21 -7.04 7.98 23.62 0.19 -6.85 16 7 C -0.27 -10.07 6.01 -19.04 -0.11 -10.18 16 8 C 0.58 24.90 7.63 86.62 0.66 25.56 16 9 O -0.60 -28.01 14.34 -4.12 -0.06 -28.07 16 10 N -0.58 -22.73 2.46 -834.56 -2.05 -24.79 16 11 C 0.13 4.45 5.68 84.23 0.48 4.93 16 12 C -0.15 -5.87 5.64 29.04 0.16 -5.71 16 13 C 0.16 6.73 5.63 87.21 0.49 7.22 16 14 N -0.61 -30.46 2.43 -697.37 -1.70 -32.16 16 15 C -0.36 -21.07 9.08 84.04 0.76 -20.30 16 16 H 0.03 1.92 8.02 -2.91 -0.02 1.89 16 17 C -0.05 -3.14 4.39 84.86 0.37 -2.77 16 18 N -0.92 -54.75 12.57 21.65 0.27 -54.48 16 19 Si 1.08 54.08 30.03 68.60 2.06 56.14 16 20 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 C 0.14 6.19 4.35 86.69 0.38 6.56 16 24 C 0.08 2.82 4.72 87.67 0.41 3.24 16 25 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 2.32 6.29 -2.39 -0.02 2.30 16 28 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 29 H 0.16 5.60 3.57 -2.91 -0.01 5.59 16 30 H 0.07 2.61 7.17 -2.39 -0.02 2.60 16 31 H 0.10 2.63 8.05 -2.39 -0.02 2.61 16 32 H 0.02 1.07 7.91 -2.39 -0.02 1.05 16 33 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.03 1.41 8.02 -2.39 -0.02 1.40 16 35 H 0.06 2.13 7.59 -2.38 -0.02 2.11 16 36 H 0.26 15.41 6.91 -92.71 -0.64 14.77 16 37 H 0.02 1.04 7.37 -2.39 -0.02 1.02 16 38 H 0.05 2.76 4.82 -2.39 -0.01 2.75 16 39 H 0.11 3.71 4.21 -2.39 -0.01 3.70 16 40 H 0.08 2.52 7.72 -2.39 -0.02 2.50 16 Total: -1.00 -76.94 308.35 3.61 -73.33 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.37 Total: 18.81 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.80 Total: 4.20 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -4.56 Total: -124.41 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.06 Total: -28.07 kcal Atomic # 14 Polarization: 54.08 SS G_CDS: 2.06 Total: 56.14 kcal Total: -76.94 3.61 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980932737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.697 kcal (2) G-P(sol) polarization free energy of solvation -76.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds