Wall clock time and date at job start Mon Mar 30 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34658 * 125.79685 * 2 1 4 4 H 0.96999 * 124.85442 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29182 * 180.29654 * 3 2 1 6 6 C 1.34481 * 108.85816 * 359.74845 * 5 3 2 7 7 C 1.36767 * 125.80135 * 179.86414 * 2 1 3 8 8 C 1.47258 * 126.94216 * 359.97438 * 7 2 1 9 9 O 1.21629 * 120.00205 * 352.95180 * 8 7 2 10 10 N 1.34775 * 119.99854 * 172.95223 * 8 7 2 11 11 C 1.47425 * 125.65075 * 354.37704 * 10 8 7 12 12 C 1.55114 * 104.94699 * 204.04279 * 11 10 8 13 13 C 1.55163 * 101.48538 * 323.22380 * 12 11 10 14 14 H 1.08996 * 110.71804 * 276.82815 * 13 12 11 15 15 N 1.46503 * 110.72150 * 153.73411 * 13 12 11 16 16 C 1.36930 * 120.00076 * 88.83950 * 15 13 12 17 17 H 1.08006 * 120.00398 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00328 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99423 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00429 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47215 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47390 * 300.00357 * 20 18 16 23 23 H 1.48506 * 109.46919 * 60.00202 * 20 18 16 24 24 C 1.47023 * 125.64773 * 174.42529 * 10 8 7 25 25 H 1.09005 * 109.88351 * 59.48545 * 24 10 8 26 26 C 1.53002 * 109.88229 * 298.31863 * 24 10 8 27 27 H 1.09007 * 109.47193 * 270.13599 * 1 2 3 28 28 H 1.09002 * 109.47570 * 30.12948 * 1 2 3 29 29 H 1.08998 * 109.47445 * 150.13804 * 1 2 3 30 30 H 1.08007 * 125.56631 * 179.76700 * 5 3 2 31 31 H 1.07998 * 126.83305 * 180.02562 * 6 5 3 32 32 H 1.08995 * 110.36680 * 323.01099 * 11 10 8 33 33 H 1.09001 * 110.36513 * 85.32940 * 11 10 8 34 34 H 1.08999 * 111.16470 * 205.13760 * 12 11 10 35 35 H 1.08994 * 110.93760 * 81.21504 * 12 11 10 36 36 H 0.97003 * 119.99654 * 268.84505 * 15 13 12 37 37 H 0.97005 * 119.99387 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.46779 * 302.18917 * 26 24 10 39 39 H 1.08994 * 109.46726 * 62.19433 * 26 24 10 40 40 H 1.09003 * 109.47050 * 182.19054 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7275 -0.0066 6 6 3.6882 -0.6151 -0.0054 7 6 2.3071 -1.1092 0.0026 8 6 1.8703 -2.5155 0.0065 9 8 0.6916 -2.7859 0.1369 10 7 2.7766 -3.5031 -0.1345 11 6 4.2118 -3.3184 -0.4164 12 6 4.6630 -4.6455 -1.0806 13 6 3.8250 -5.6863 -0.2919 14 1 4.3134 -5.9418 0.6485 15 7 3.5979 -6.8877 -1.0989 16 6 4.5009 -7.9164 -1.0645 17 1 5.3805 -7.8424 -0.4422 18 6 4.2855 -9.0550 -1.8288 19 7 3.2133 -9.1455 -2.5869 20 14 5.5170 -10.4587 -1.7813 21 1 5.0597 -11.5490 -2.6798 22 1 6.8438 -9.9687 -2.2338 23 1 5.6269 -10.9741 -0.3929 24 6 2.4975 -4.9430 -0.0335 25 1 1.7595 -5.2310 -0.7823 26 6 1.9790 -5.2756 1.3671 27 1 -0.3634 0.0024 1.0277 28 1 -0.3634 0.8888 -0.5158 29 1 -0.3634 -0.8912 -0.5117 30 1 4.4497 1.4061 -0.0117 31 1 4.5890 -1.2108 -0.0092 32 1 4.3596 -2.4818 -1.0993 33 1 4.7623 -3.1547 0.5100 34 1 5.7303 -4.8141 -0.9375 35 1 4.4055 -4.6583 -2.1396 36 1 2.8077 -6.9544 -1.6577 37 1 3.0629 -9.9411 -3.1212 38 1 2.7147 -4.9666 2.1096 39 1 1.0418 -4.7475 1.5424 40 1 1.8113 -6.3497 1.4468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986148860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:16 Heat of formation + Delta-G solvation = 5.501308 kcal Electronic energy + Delta-G solvation = -21703.148160 eV Core-core repulsion = 18518.061124 eV Total energy + Delta-G solvation = -3185.087036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18956 -40.72517 -38.53598 -35.89408 -33.56449 -32.51008 -32.41810 -31.63828 -30.49985 -27.32661 -26.79881 -25.02471 -24.40445 -22.46984 -21.68986 -21.14077 -19.44153 -19.08967 -18.40061 -17.44869 -16.85087 -16.51746 -16.11500 -15.64048 -15.32254 -15.12655 -14.72511 -14.52236 -14.34306 -14.31655 -13.66423 -13.62525 -13.54276 -13.40607 -13.23087 -13.03363 -12.81173 -12.57289 -12.47989 -12.30738 -12.16287 -12.07801 -11.67987 -11.49649 -10.89605 -10.75406 -9.78938 -9.56735 -9.03040 -9.00064 -7.91522 -5.21787 0.78634 1.50601 1.53916 1.59740 1.60249 2.02319 2.47264 2.57295 2.61540 3.39916 3.65188 3.80848 3.93843 3.96689 4.15846 4.22780 4.31851 4.36734 4.40134 4.44878 4.58016 4.66549 4.70625 4.72439 4.77185 4.95043 5.00605 5.07539 5.09579 5.23264 5.24694 5.29534 5.42323 5.53696 5.56866 5.83811 6.04647 6.28393 6.68724 6.76113 7.33626 7.35077 8.06584 8.31384 9.32037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035601 B = 0.003862 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.299170 B = 7249.048590 C = 7663.375475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.097 3.903 3 N -0.537 5.537 4 H 0.433 0.567 5 C 0.000 4.000 6 C -0.196 4.196 7 C -0.266 4.266 8 C 0.592 3.408 9 O -0.593 6.593 10 N -0.607 5.607 11 C 0.107 3.893 12 C -0.149 4.149 13 C 0.171 3.829 14 H 0.072 0.928 15 N -0.729 5.729 16 C -0.238 4.238 17 H 0.084 0.916 18 C -0.076 4.076 19 N -0.973 5.973 20 Si 0.976 3.024 21 H -0.300 1.300 22 H -0.275 1.275 23 H -0.277 1.277 24 C 0.134 3.866 25 H 0.040 0.960 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.211 0.789 31 H 0.164 0.836 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.370 0.630 37 H 0.250 0.750 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 24.808 6.990 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 N -0.134 5.134 4 H 0.274 0.726 5 C -0.128 4.128 6 C -0.219 4.219 7 C -0.276 4.276 8 C 0.386 3.614 9 O -0.476 6.476 10 N -0.339 5.339 11 C -0.015 4.015 12 C -0.189 4.189 13 C 0.062 3.938 14 H 0.090 0.910 15 N -0.368 5.368 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.268 4.268 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.227 1.227 22 H -0.201 1.201 23 H -0.203 1.203 24 C 0.029 3.971 25 H 0.059 0.941 26 C -0.199 4.199 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.086 0.914 30 H 0.227 0.773 31 H 0.181 0.819 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.202 0.798 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.943 24.752 7.124 25.830 hybrid contribution -0.196 -1.055 -0.551 1.207 sum 1.747 23.697 6.573 24.653 Atomic orbital electron populations 1.20483 0.86672 1.03926 1.03600 1.20411 0.94225 0.86136 1.01533 1.41586 1.06047 1.08527 1.57222 0.72648 1.22368 0.86366 0.96202 1.07840 1.22715 0.95401 0.94969 1.08844 1.20138 0.95585 0.90628 1.21260 1.17594 0.83863 0.84734 0.75235 1.90679 1.18181 1.84890 1.53892 1.48304 1.10194 1.05084 1.70341 1.22779 0.79662 0.98300 1.00803 1.23456 1.01375 0.94638 0.99478 1.21426 0.92042 0.86052 0.94305 0.91028 1.42523 1.26583 1.15761 1.51962 1.19615 1.01831 0.94838 1.20709 0.89818 1.25597 0.99892 1.01217 1.00107 1.69846 1.29747 1.29654 1.33072 0.85183 0.78497 0.78632 0.77257 1.22676 1.20055 1.20307 1.21596 0.97648 0.80611 0.97244 0.94148 1.21905 1.01066 1.01311 0.95654 0.90154 0.88832 0.91391 0.77282 0.81851 0.88447 0.89162 0.88997 0.92940 0.79823 0.94131 0.91339 0.93189 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.81 71.24 0.70 -1.07 16 2 C 0.10 2.10 7.17 41.78 0.30 2.40 16 3 N -0.54 -7.03 5.90 -182.72 -1.08 -8.11 16 4 H 0.43 2.26 8.96 -92.71 -0.83 1.43 16 5 C 0.00 0.00 11.89 83.11 0.99 0.99 16 6 C -0.20 -3.91 9.25 23.62 0.22 -3.69 16 7 C -0.27 -7.33 6.18 -19.04 -0.12 -7.44 16 8 C 0.59 21.06 7.58 86.61 0.66 21.72 16 9 O -0.59 -24.74 14.18 -4.12 -0.06 -24.80 16 10 N -0.61 -20.70 3.07 -791.65 -2.43 -23.13 16 11 C 0.11 2.86 5.12 86.93 0.45 3.31 16 12 C -0.15 -4.95 6.79 32.06 0.22 -4.73 16 13 C 0.17 6.84 3.12 46.18 0.14 6.99 16 14 H 0.07 2.77 7.81 -2.39 -0.02 2.75 16 15 N -0.73 -37.20 5.24 -317.31 -1.66 -38.87 16 16 C -0.24 -13.04 9.97 84.03 0.84 -12.20 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -60.43 13.06 21.65 0.28 -60.14 16 20 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 21 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.13 5.22 3.19 45.34 0.14 5.36 16 25 H 0.04 1.85 7.70 -2.38 -0.02 1.83 16 26 C -0.14 -5.14 9.10 71.98 0.65 -4.48 16 27 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.82 6.64 -2.39 -0.02 1.81 16 30 H 0.21 0.91 8.06 -2.91 -0.02 0.88 16 31 H 0.16 2.78 5.16 -2.91 -0.02 2.77 16 32 H 0.10 2.27 5.90 -2.39 -0.01 2.26 16 33 H 0.09 1.98 7.76 -2.39 -0.02 1.96 16 34 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.37 20.94 7.53 -92.71 -0.70 20.24 16 37 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 1.90 7.09 -2.39 -0.02 1.88 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -75.12 324.60 2.28 -72.84 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.46 Total: 31.05 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 5.65 Total: 3.25 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -4.88 Total: -130.24 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -75.12 2.28 -72.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986148860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.338 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds