Wall clock time and date at job start Mon Mar 30 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34654 * 125.80254 * 2 1 4 4 H 0.96999 * 124.85110 * 0.05039 * 3 2 1 5 5 C 1.36447 * 110.30004 * 180.30443 * 3 2 1 6 6 C 1.34492 * 108.85248 * 359.72676 * 5 3 2 7 7 C 1.36768 * 125.80014 * 179.83665 * 2 1 3 8 8 C 1.47271 * 126.94395 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99734 * 32.15588 * 8 7 2 10 10 N 1.34771 * 119.99768 * 212.16292 * 8 7 2 11 11 C 1.47428 * 125.64889 * 355.80296 * 10 8 7 12 12 C 1.54914 * 104.83153 * 155.84179 * 11 10 8 13 13 C 1.55159 * 101.61492 * 36.98899 * 12 11 10 14 14 H 1.08997 * 110.71738 * 82.88628 * 13 12 11 15 15 N 1.46503 * 110.71713 * 206.15383 * 13 12 11 16 16 C 1.36936 * 119.99792 * 273.54988 * 15 13 12 17 17 H 1.07996 * 120.00596 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99552 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99760 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47241 * 60.00435 * 20 18 16 22 22 H 1.48506 * 109.46940 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47230 * 300.00073 * 20 18 16 24 24 C 1.47025 * 125.64866 * 175.76908 * 10 8 7 25 25 H 1.08994 * 109.88124 * 61.51609 * 24 10 8 26 26 C 1.53001 * 109.87682 * 300.50539 * 24 10 8 27 27 H 1.08995 * 109.47184 * 270.15980 * 1 2 3 28 28 H 1.08992 * 109.47216 * 30.16832 * 1 2 3 29 29 H 1.09002 * 109.46952 * 150.16463 * 1 2 3 30 30 H 1.08000 * 125.57206 * 179.75294 * 5 3 2 31 31 H 1.07998 * 126.82642 * 180.02562 * 6 5 3 32 32 H 1.08994 * 110.36636 * 37.00226 * 11 10 8 33 33 H 1.09004 * 110.36487 * 274.67852 * 11 10 8 34 34 H 1.08996 * 111.00133 * 155.08219 * 12 11 10 35 35 H 1.08995 * 111.00058 * 278.89499 * 12 11 10 36 36 H 0.97000 * 119.99816 * 93.54889 * 15 13 12 37 37 H 0.97001 * 119.99586 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46868 * 61.45618 * 26 24 10 39 39 H 1.09003 * 109.47111 * 181.45226 * 26 24 10 40 40 H 1.08999 * 109.47694 * 301.45174 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0073 0.0007 5 6 3.6096 0.7274 -0.0068 6 6 3.6882 -0.6152 -0.0052 7 6 2.3071 -1.1093 0.0032 8 6 1.8702 -2.5157 0.0077 9 8 0.8380 -2.8336 -0.5515 10 7 2.6142 -3.4503 0.6317 11 6 3.9230 -3.2211 1.2704 12 6 4.0523 -4.3483 2.3252 13 6 3.3887 -5.5423 1.5894 14 1 4.0994 -6.0251 0.9187 15 7 2.8441 -6.5051 2.5500 16 6 3.6458 -7.4908 3.0607 17 1 4.6793 -7.5588 2.7550 18 6 3.1299 -8.4027 3.9713 19 7 1.8701 -8.3202 4.3435 20 14 4.2233 -9.7479 4.6674 21 1 5.3685 -9.1330 5.3853 22 1 3.4388 -10.5847 5.6107 23 1 4.7313 -10.5958 3.5592 24 6 2.2546 -4.8672 0.7888 25 1 2.1586 -5.3361 -0.1905 26 6 0.9354 -4.9874 1.5545 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8884 -0.5164 29 1 -0.3633 -0.8915 -0.5113 30 1 4.4498 1.4060 -0.0121 31 1 4.5890 -1.2109 -0.0090 32 1 3.9432 -2.2447 1.7542 33 1 4.7230 -3.2972 0.5339 34 1 5.0988 -4.5584 2.5461 35 1 3.5060 -4.0971 3.2342 36 1 1.9157 -6.4442 2.8243 37 1 1.5095 -8.9577 4.9795 38 1 0.1419 -4.4975 0.9902 39 1 0.6884 -6.0404 1.6896 40 1 1.0362 -4.5099 2.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986148866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:20 Heat of formation + Delta-G solvation = 30.467981 kcal Electronic energy + Delta-G solvation = -21823.321672 eV Core-core repulsion = 18639.317272 eV Total energy + Delta-G solvation = -3184.004400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29741 -39.45625 -37.14696 -34.09614 -31.94999 -31.62724 -30.84636 -30.46362 -28.70840 -26.38468 -25.11559 -23.74878 -22.91062 -21.34822 -20.78634 -19.01948 -18.22331 -17.65650 -17.35438 -15.97887 -15.48849 -15.13185 -14.79482 -14.34652 -13.88931 -13.71619 -13.58716 -13.41897 -13.04555 -12.81244 -12.67333 -12.52076 -12.31914 -11.94529 -11.67186 -11.54089 -11.35992 -11.09505 -10.92673 -10.75230 -10.36497 -10.17045 -9.91372 -9.65060 -9.40134 -8.91708 -8.82682 -8.32617 -8.09287 -6.96441 -5.76907 -3.06168 1.86756 2.40143 3.00432 3.44197 3.45259 3.49627 3.50393 3.67586 4.59713 4.75613 4.83387 5.03061 5.11723 5.21363 5.38679 5.47762 5.52113 5.52273 5.65959 5.70014 5.78484 5.84128 5.86913 5.95640 6.11069 6.19606 6.21865 6.33336 6.44902 6.66193 6.67591 6.69554 6.81687 6.87453 6.98887 7.09887 7.34172 7.70403 8.00803 8.41905 8.63477 9.53355 10.09635 10.44838 11.45701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.003967 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.525403 B = 7056.310261 C = 7509.830252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.093 3.907 3 N -0.555 5.555 4 H 0.413 0.587 5 C -0.023 4.023 6 C -0.166 4.166 7 C -0.222 4.222 8 C 0.604 3.396 9 O -0.553 6.553 10 N -0.602 5.602 11 C 0.100 3.900 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.062 0.938 15 N -0.718 5.718 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.130 3.870 25 H 0.070 0.930 26 C -0.157 4.157 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.391 0.609 37 H 0.256 0.744 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.381 20.125 -8.050 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.024 4.024 3 N -0.151 5.151 4 H 0.249 0.751 5 C -0.150 4.150 6 C -0.190 4.190 7 C -0.231 4.231 8 C 0.394 3.606 9 O -0.433 6.433 10 N -0.335 5.335 11 C -0.023 4.023 12 C -0.196 4.196 13 C 0.062 3.938 14 H 0.080 0.920 15 N -0.361 5.361 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.026 3.974 25 H 0.088 0.912 26 C -0.215 4.215 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.185 0.815 31 H 0.164 0.836 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.881 19.963 -8.314 21.707 hybrid contribution 0.467 -0.205 0.625 0.807 sum 2.348 19.758 -7.689 21.331 Atomic orbital electron populations 1.20572 0.87293 1.04486 1.03237 1.20225 0.93547 0.85607 1.03052 1.41538 1.06236 1.08216 1.59086 0.75054 1.21694 0.85602 0.96429 1.11271 1.22173 0.95952 0.93450 1.07460 1.20141 0.93369 0.92082 1.17555 1.16985 0.82551 0.83466 0.77580 1.90708 1.25131 1.81797 1.45670 1.48363 1.20720 1.09371 1.55059 1.22458 0.84602 0.99965 0.95284 1.23553 1.01961 0.95982 0.98081 1.21187 0.92354 0.89315 0.90992 0.92027 1.42669 1.12479 1.31882 1.49112 1.19209 0.93631 1.05207 1.19364 0.91134 1.24743 0.96225 0.99576 1.00177 1.69653 1.12758 1.38831 1.36772 0.86256 0.79413 0.81815 0.78605 1.21270 1.21732 1.21243 1.21785 0.96462 0.79970 0.99156 0.91176 1.21991 0.96550 1.03073 0.99928 0.90737 0.91766 0.87929 0.81525 0.83568 0.90836 0.92029 0.90797 0.90806 0.77101 0.93381 0.92277 0.90326 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 10.19 36.01 0.37 -0.66 16 2 C 0.09 1.10 7.17 -81.88 -0.59 0.52 16 3 N -0.55 -4.77 5.90 -9.10 -0.05 -4.82 16 4 H 0.41 2.07 8.96 -40.82 -0.37 1.71 16 5 C -0.02 -0.20 11.89 -16.82 -0.20 -0.40 16 6 C -0.17 -1.92 9.09 -37.50 -0.34 -2.26 16 7 C -0.22 -3.19 5.80 -103.35 -0.60 -3.78 16 8 C 0.60 10.54 7.43 -12.59 -0.09 10.45 16 9 O -0.55 -11.02 14.37 5.26 0.08 -10.95 16 10 N -0.60 -10.23 3.08 -164.30 -0.51 -10.74 16 11 C 0.10 1.45 5.38 -2.52 -0.01 1.44 16 12 C -0.15 -2.66 6.77 -24.58 -0.17 -2.83 16 13 C 0.17 3.46 3.46 -66.07 -0.23 3.23 16 14 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 15 N -0.72 -17.76 5.02 -51.63 -0.26 -18.02 16 16 C -0.24 -6.62 9.98 -15.06 -0.15 -6.77 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 C 0.13 2.45 3.46 -66.93 -0.23 2.22 16 25 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 26 C -0.16 -3.10 7.94 37.16 0.30 -2.80 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 1.32 6.46 -51.93 -0.34 0.99 16 30 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.15 1.51 6.61 -52.49 -0.35 1.17 16 32 H 0.07 0.98 6.51 -51.93 -0.34 0.64 16 33 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.39 10.21 4.93 -40.82 -0.20 10.01 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.06 1.15 6.88 -51.93 -0.36 0.80 16 39 H 0.08 1.66 6.72 -51.93 -0.35 1.31 16 40 H 0.06 1.13 8.06 -51.93 -0.42 0.71 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -33.04 322.29 -7.85 -40.89 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.62 Total: 10.89 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.05 Total: -2.05 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.09 Total: -60.75 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.04 -7.85 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986148866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.357 kcal (2) G-P(sol) polarization free energy of solvation -33.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds