Wall clock time and date at job start Mon Mar 30 2020 01:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34654 * 125.80254 * 2 1 4 4 H 0.96999 * 124.85110 * 0.05039 * 3 2 1 5 5 C 1.36447 * 110.30004 * 180.30443 * 3 2 1 6 6 C 1.34492 * 108.85248 * 359.72676 * 5 3 2 7 7 C 1.36768 * 125.80014 * 179.83665 * 2 1 3 8 8 C 1.47271 * 126.94395 * 359.97438 * 7 2 1 9 9 O 1.21624 * 119.99734 * 32.15588 * 8 7 2 10 10 N 1.34771 * 119.99768 * 212.16292 * 8 7 2 11 11 C 1.47428 * 125.64889 * 355.80296 * 10 8 7 12 12 C 1.54914 * 104.83153 * 155.84179 * 11 10 8 13 13 C 1.55159 * 101.61492 * 36.98899 * 12 11 10 14 14 H 1.08997 * 110.71738 * 82.88628 * 13 12 11 15 15 N 1.46503 * 110.71713 * 206.15383 * 13 12 11 16 16 C 1.36936 * 119.99792 * 273.54988 * 15 13 12 17 17 H 1.07996 * 120.00596 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99552 * 179.97438 * 16 15 13 19 19 N 1.31621 * 120.00074 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99760 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47241 * 60.00435 * 20 18 16 22 22 H 1.48506 * 109.46940 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47230 * 300.00073 * 20 18 16 24 24 C 1.47025 * 125.64866 * 175.76908 * 10 8 7 25 25 H 1.08994 * 109.88124 * 61.51609 * 24 10 8 26 26 C 1.53001 * 109.87682 * 300.50539 * 24 10 8 27 27 H 1.08995 * 109.47184 * 270.15980 * 1 2 3 28 28 H 1.08992 * 109.47216 * 30.16832 * 1 2 3 29 29 H 1.09002 * 109.46952 * 150.16463 * 1 2 3 30 30 H 1.08000 * 125.57206 * 179.75294 * 5 3 2 31 31 H 1.07998 * 126.82642 * 180.02562 * 6 5 3 32 32 H 1.08994 * 110.36636 * 37.00226 * 11 10 8 33 33 H 1.09004 * 110.36487 * 274.67852 * 11 10 8 34 34 H 1.08996 * 111.00133 * 155.08219 * 12 11 10 35 35 H 1.08995 * 111.00058 * 278.89499 * 12 11 10 36 36 H 0.97000 * 119.99816 * 93.54889 * 15 13 12 37 37 H 0.97001 * 119.99586 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.46868 * 61.45618 * 26 24 10 39 39 H 1.09003 * 109.47111 * 181.45226 * 26 24 10 40 40 H 1.08999 * 109.47694 * 301.45174 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0073 0.0007 5 6 3.6096 0.7274 -0.0068 6 6 3.6882 -0.6152 -0.0052 7 6 2.3071 -1.1093 0.0032 8 6 1.8702 -2.5157 0.0077 9 8 0.8380 -2.8336 -0.5515 10 7 2.6142 -3.4503 0.6317 11 6 3.9230 -3.2211 1.2704 12 6 4.0523 -4.3483 2.3252 13 6 3.3887 -5.5423 1.5894 14 1 4.0994 -6.0251 0.9187 15 7 2.8441 -6.5051 2.5500 16 6 3.6458 -7.4908 3.0607 17 1 4.6793 -7.5588 2.7550 18 6 3.1299 -8.4027 3.9713 19 7 1.8701 -8.3202 4.3435 20 14 4.2233 -9.7479 4.6674 21 1 5.3685 -9.1330 5.3853 22 1 3.4388 -10.5847 5.6107 23 1 4.7313 -10.5958 3.5592 24 6 2.2546 -4.8672 0.7888 25 1 2.1586 -5.3361 -0.1905 26 6 0.9354 -4.9874 1.5545 27 1 -0.3633 0.0029 1.0276 28 1 -0.3633 0.8884 -0.5164 29 1 -0.3633 -0.8915 -0.5113 30 1 4.4498 1.4060 -0.0121 31 1 4.5890 -1.2109 -0.0090 32 1 3.9432 -2.2447 1.7542 33 1 4.7230 -3.2972 0.5339 34 1 5.0988 -4.5584 2.5461 35 1 3.5060 -4.0971 3.2342 36 1 1.9157 -6.4442 2.8243 37 1 1.5095 -8.9577 4.9795 38 1 0.1419 -4.4975 0.9902 39 1 0.6884 -6.0404 1.6896 40 1 1.0362 -4.5099 2.5291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986148866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:19 Heat of formation + Delta-G solvation = 8.287287 kcal Electronic energy + Delta-G solvation = -21824.283499 eV Core-core repulsion = 18639.317272 eV Total energy + Delta-G solvation = -3184.966227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.16908 -40.80454 -38.61166 -35.89090 -33.57076 -32.46277 -32.25952 -31.75514 -30.34312 -27.29420 -26.75138 -25.49537 -24.32390 -22.57560 -21.62398 -20.50280 -19.47574 -19.34190 -18.48981 -17.22841 -16.97290 -16.51137 -16.31700 -15.58663 -15.55690 -15.09951 -14.71022 -14.60797 -14.41376 -13.93094 -13.79960 -13.63340 -13.43529 -13.42343 -13.09795 -12.98255 -12.86831 -12.80157 -12.49863 -12.42107 -12.10267 -12.01754 -11.56752 -11.50935 -10.88315 -10.79632 -9.74461 -9.56599 -9.03413 -8.98656 -7.91108 -5.20342 0.86140 1.50883 1.53972 1.59752 1.61325 1.98052 2.44115 2.50483 2.61417 3.40066 3.65254 3.81885 3.95769 3.96555 4.11302 4.22915 4.32815 4.36248 4.42531 4.44247 4.60413 4.66786 4.68668 4.72796 4.83095 4.88725 5.02718 5.08510 5.09454 5.20731 5.26296 5.29353 5.41181 5.55147 5.57099 5.84789 6.05654 6.30269 6.68081 6.75589 7.31497 7.37508 8.10926 8.35520 9.32597 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035501 B = 0.003967 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.525403 B = 7056.310261 C = 7509.830252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.089 3.911 3 N -0.537 5.537 4 H 0.433 0.567 5 C 0.001 3.999 6 C -0.189 4.189 7 C -0.263 4.263 8 C 0.597 3.403 9 O -0.591 6.591 10 N -0.605 5.605 11 C 0.111 3.889 12 C -0.144 4.144 13 C 0.167 3.833 14 H 0.067 0.933 15 N -0.732 5.732 16 C -0.241 4.241 17 H 0.082 0.918 18 C -0.075 4.075 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.276 1.276 22 H -0.300 1.300 23 H -0.278 1.278 24 C 0.135 3.865 25 H 0.062 0.938 26 C -0.141 4.141 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.210 0.790 31 H 0.156 0.844 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.380 0.620 37 H 0.250 0.750 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 22.793 -8.516 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.030 4.030 3 N -0.134 5.134 4 H 0.273 0.727 5 C -0.127 4.127 6 C -0.212 4.212 7 C -0.273 4.273 8 C 0.390 3.610 9 O -0.473 6.473 10 N -0.337 5.337 11 C -0.011 4.011 12 C -0.185 4.185 13 C 0.057 3.943 14 H 0.085 0.915 15 N -0.375 5.375 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.267 4.267 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.201 1.201 22 H -0.226 1.226 23 H -0.205 1.205 24 C 0.030 3.970 25 H 0.080 0.920 26 C -0.200 4.200 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.227 0.773 31 H 0.173 0.827 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.216 0.784 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.314 22.702 -8.807 24.729 hybrid contribution -0.282 -0.912 0.687 1.176 sum 4.032 21.790 -8.120 23.600 Atomic orbital electron populations 1.20535 0.86875 1.04510 1.03502 1.20331 0.94117 0.86107 1.02403 1.41550 1.06005 1.08505 1.57367 0.72686 1.22315 0.86379 0.96112 1.07871 1.22350 0.94880 0.94824 1.09174 1.20108 0.95679 0.90643 1.20865 1.17595 0.81930 0.84796 0.76725 1.90677 1.26774 1.82604 1.47289 1.48397 1.21712 1.08257 1.55341 1.22543 0.84010 0.99623 0.94945 1.23369 1.02033 0.95403 0.97696 1.21370 0.92776 0.89519 0.90654 0.91520 1.42842 1.12013 1.32668 1.50002 1.19642 0.94200 1.05053 1.18349 0.90052 1.25562 0.97522 1.02259 1.01365 1.69827 1.14643 1.39888 1.37895 0.85196 0.77708 0.78976 0.77759 1.20148 1.22613 1.20455 1.21548 0.95509 0.81649 0.98251 0.92000 1.21796 0.97292 1.01413 0.99468 0.90348 0.88572 0.91022 0.77317 0.82654 0.88916 0.89333 0.89263 0.92827 0.78364 0.94102 0.92606 0.92350 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 10.19 71.24 0.73 -1.19 16 2 C 0.09 1.95 7.17 41.78 0.30 2.25 16 3 N -0.54 -7.17 5.90 -182.72 -1.08 -8.24 16 4 H 0.43 2.41 8.96 -92.71 -0.83 1.58 16 5 C 0.00 0.01 11.89 83.12 0.99 1.00 16 6 C -0.19 -3.77 9.09 23.62 0.21 -3.56 16 7 C -0.26 -7.21 5.80 -19.04 -0.11 -7.32 16 8 C 0.60 20.97 7.43 86.62 0.64 21.62 16 9 O -0.59 -24.44 14.37 -4.11 -0.06 -24.50 16 10 N -0.60 -20.40 3.08 -791.98 -2.44 -22.84 16 11 C 0.11 3.00 5.38 86.86 0.47 3.47 16 12 C -0.14 -4.80 6.77 31.99 0.22 -4.58 16 13 C 0.17 6.66 3.46 46.19 0.16 6.82 16 14 H 0.07 2.60 8.12 -2.39 -0.02 2.58 16 15 N -0.73 -36.97 5.02 -317.25 -1.59 -38.56 16 16 C -0.24 -13.16 9.98 84.03 0.84 -12.32 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 18 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 19 N -0.97 -59.79 13.06 21.65 0.28 -59.51 16 20 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 C 0.13 5.21 3.46 45.36 0.16 5.37 16 25 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 26 C -0.14 -5.87 7.94 71.98 0.57 -5.30 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.91 6.46 -2.39 -0.02 1.89 16 30 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 31 H 0.16 2.68 6.61 -2.91 -0.02 2.66 16 32 H 0.09 2.22 6.51 -2.39 -0.02 2.20 16 33 H 0.09 1.97 7.75 -2.39 -0.02 1.95 16 34 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.38 20.68 4.93 -92.71 -0.46 20.22 16 37 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.05 2.31 6.88 -2.39 -0.02 2.30 16 39 H 0.06 2.63 6.72 -2.39 -0.02 2.62 16 40 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 Total: -1.00 -74.10 322.29 2.56 -71.55 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: -0.22 Total: 31.81 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 5.64 Total: 2.44 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -4.83 Total: -129.16 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.06 Total: -24.50 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -74.10 2.56 -71.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986148866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.833 kcal (2) G-P(sol) polarization free energy of solvation -74.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds